Clone RE54230 Report

Search the DGRC for RE54230

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:542
Well:30
Vector:pFlc-1
Associated Gene/TranscriptCG30339-RA
Protein status:RE54230.pep: gold
Sequenced Size:1039

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1863 2002-01-01 Sim4 clustering to Release 2
CG30339 2002-02-22 Blastp of sequenced clone
CG30339 2003-01-01 Sim4 clustering to Release 3
CG30339 2008-04-29 Release 5.5 accounting
CG30339 2008-08-15 Release 5.9 accounting
CG30340 2008-08-15 Release 5.9 accounting
CG30340 2008-12-18 5.12 accounting
CG30339 2008-12-18 5.12 accounting

Clone Sequence Records

RE54230.complete Sequence

1039 bp (1039 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084181

> RE54230.complete
AGTAGCCGTCCAGCCGCCACGAAGCAAGCGACTTCCCAAAAATGGCCAAT
CTGCGTCCCCTGAGCGCCGAACTTCGTCGCATTGCTGAAACGGAGCTAAA
CGAAGTGGAGGAGCGAGTGCCCGCGGATCTGAAAGCTCTTCGGGATTGGT
TGGCCAAGCAACCTCATCTGAGGGCCCGCCAGGATGACCAGTTCCTAGTT
GGCTTCTTGCGAGGCTGCAAGTTTAGCCTGGAGAAGACCAAGTCCAAGCT
GGATCACTTTTATACTATTAAGACGCTTATGCCTGAGCTCTTCGGCAAAA
GATTGGTGGACGAAAGGAACCTAATCTTGTGCAGATCTGGAACCTATGTT
CGATTGCCCAAACCTTGGGGAACCGATGGCCCCCGCCTGCAGCTTACGAA
CTATGAGAAATTCGACCCTAAGGAATTCAAGTTATTGGATCTCTTCCGCT
ACCAAACCATGATAACGGAACAGTCAATCCGTGAGGATGACCACAGCAAC
ATTAGCGGCTACGTCGAGATCGTTGACATGGCCAAAATGAGCCTCAGTTT
TCTGGCCCAACTGGATTTCACGCTCATCAAAAGGATGGGAATATTCGCTG
AGAAGGCACAGCCCACTCGCTTGAAAGGAGTCCATCTGATCAATTGCCCC
AAGGAGGGAGTGGCGTTACTGAATTTGGCCAAGAGCCTAATGCCCAGCAA
GCTCCAGCAGCGGTTTCACGTGTATAAAAATCTCGAGCAATTAAACGAGG
TGATACCACGCGAATACCTGCCGGAAGAATATGGTGGCAACAATGGACGT
ATAGCCGACATTCAGGCGGAAGCGGAGAAGAAATTGCTGTCCTATGAGAG
CTATTTTGCTGAGGATTCCCAGTACGGAGTGGATGAGCAGCTGCGGCCTG
GAAAGCGTGTTAATGCGGATTCAATTTTTGGCGCTGAGGGATCCTTCCGA
AAACTCGACATCGATTAAAGTCGGAACGTGTTTTAATTAGTATTCAATAA
AAGGCAAAAACAATCCTCAAAGCAAAAAAAAAAAAAAAA

RE54230.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG30339-RA 1354 CG30339-RA 186..1210 1..1025 5110 99.9 Plus
CG12926.a 1268 CG12926.a 232..341 154..263 235 80.9 Plus
CG12926-RA 1870 CG12926-RA 771..880 154..263 235 80.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5489630..5490003 713..340 1825 99.2 Minus
chr2R 21145070 chr2R 5490068..5490404 337..1 1685 100 Minus
chr2R 21145070 chr2R 5488934..5489242 1021..713 1545 100 Minus
chr2R 21145070 chr2R 5496667..5496776 263..154 235 80.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9602127..9602500 713..340 1870 100 Minus
2R 25286936 2R 9602562..9602901 340..1 1700 100 Minus
2R 25286936 2R 9601429..9601741 1025..713 1550 99.7 Minus
2R 25286936 2R 9609173..9609282 263..154 235 80.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9603326..9603699 713..340 1870 100 Minus
2R 25260384 2R 9603761..9604100 340..1 1700 100 Minus
2R 25260384 2R 9602628..9602940 1025..713 1550 99.6 Minus
2R 25260384 2R 9610372..9610481 263..154 235 80.9 Minus
Blast to na_te.dros performed on 2019-03-15 19:57:17 has no hits.

RE54230.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:58:08 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5488932..5489241 714..1023 99 <- Minus
chr2R 5490065..5490404 1..340 99   Minus
chr2R 5489630..5490002 341..713 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:08 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..927 42..968 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:37:28 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..927 42..968 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:01:08 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..927 42..968 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:19 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..927 42..968 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:50 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..927 42..968 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:45 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..1021 1..1021 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:37:28 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..1023 1..1023 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:01:08 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..1023 1..1023 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:19 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..1021 1..1021 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:50 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..1023 1..1023 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:08 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9601431..9601740 714..1023 99 <- Minus
2R 9602127..9602499 341..713 100 <- Minus
2R 9602562..9602901 1..340 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:08 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9601431..9601740 714..1023 99 <- Minus
2R 9602127..9602499 341..713 100 <- Minus
2R 9602562..9602901 1..340 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:08 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9601431..9601740 714..1023 99 <- Minus
2R 9602127..9602499 341..713 100 <- Minus
2R 9602562..9602901 1..340 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:01:08 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5488936..5489245 714..1023 99 <- Minus
arm_2R 5489632..5490004 341..713 100 <- Minus
arm_2R 5490067..5490406 1..340 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:23 Download gff for RE54230.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9602630..9602939 714..1023 99 <- Minus
2R 9603326..9603698 341..713 100 <- Minus
2R 9603761..9604100 1..340 100   Minus

RE54230.pep Sequence

Translation from 41 to 967

> RE54230.pep
MANLRPLSAELRRIAETELNEVEERVPADLKALRDWLAKQPHLRARQDDQ
FLVGFLRGCKFSLEKTKSKLDHFYTIKTLMPELFGKRLVDERNLILCRSG
TYVRLPKPWGTDGPRLQLTNYEKFDPKEFKLLDLFRYQTMITEQSIREDD
HSNISGYVEIVDMAKMSLSFLAQLDFTLIKRMGIFAEKAQPTRLKGVHLI
NCPKEGVALLNLAKSLMPSKLQQRFHVYKNLEQLNEVIPREYLPEEYGGN
NGRIADIQAEAEKKLLSYESYFAEDSQYGVDEQLRPGKRVNADSIFGAEG
SFRKLDID*

RE54230.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12490-PA 308 GF12490-PA 1..308 1..308 1419 83.8 Plus
Dana\GF12489-PA 311 GF12489-PA 6..311 3..308 828 47.7 Plus
Dana\GF24441-PA 310 GF24441-PA 1..310 1..308 685 43.2 Plus
Dana\GF15442-PA 313 GF15442-PA 1..313 1..308 656 43.1 Plus
Dana\GF25066-PA 311 GF25066-PA 5..311 4..308 616 39.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25272-PA 308 GG25272-PA 1..308 1..308 1554 93.5 Plus
Dere\GG25270-PA 313 GG25270-PA 8..313 3..308 823 47.7 Plus
Dere\GG23602-PA 313 GG23602-PA 1..313 1..308 685 44.1 Plus
Dere\GG14766-PA 324 GG14766-PA 15..324 1..308 668 41 Plus
Dere\GG15223-PA 311 GG15223-PA 5..311 4..308 637 41.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22857-PA 310 GH22857-PA 6..310 4..308 1210 69.2 Plus
Dgri\GH22856-PA 316 GH22856-PA 11..316 3..308 795 45.8 Plus
Dgri\GH15439-PA 324 GH15439-PA 15..324 1..308 662 42.3 Plus
Dgri\GH13581-PA 314 GH13581-PA 6..314 4..308 650 43 Plus
Dgri\GH15438-PA 318 GH15438-PA 8..318 2..308 642 41.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30339-PA 308 CG30339-PA 1..308 1..308 1588 100 Plus
CG12926-PA 313 CG12926-PA 8..313 3..308 795 46.7 Plus
CG33966-PA 310 CG33966-PA 1..310 1..308 672 42.6 Plus
CG33514-PA 311 CG33514-PA 5..311 4..308 644 42.3 Plus
CG31636-PB 313 CG31636-PB 1..313 1..308 640 42.8 Plus
CG31636-PA 313 CG31636-PA 1..313 1..308 640 42.8 Plus
CG33965-PA 317 CG33965-PA 8..317 3..308 604 41.6 Plus
CG1902-PC 312 CG1902-PC 1..312 1..308 564 38.6 Plus
CG1902-PA 312 CG1902-PA 1..312 1..308 564 38.6 Plus
CG10301-PB 306 CG10301-PB 3..306 5..308 529 35.2 Plus
CG10300-PA 311 CG10300-PA 1..311 1..308 510 34.9 Plus
CG2663-PC 308 CG2663-PC 1..308 1..308 441 34.1 Plus
CG2663-PA 308 CG2663-PA 1..308 1..308 441 34.1 Plus
CG10657-PA 334 CG10657-PA 31..334 7..308 323 30.8 Plus
CG11550-PA 298 CG11550-PA 15..298 23..308 322 31.2 Plus
Cralbp-PA 324 CG10546-PA 11..324 7..308 226 26.5 Plus
CG3191-PC 309 CG3191-PC 15..300 8..289 222 26 Plus
CG3191-PA 309 CG3191-PA 15..300 8..289 222 26 Plus
CG3823-PA 295 CG3823-PA 20..295 33..308 212 24 Plus
CG5958-PA 294 CG5958-PA 18..290 7..279 208 26.9 Plus
CG3091-PC 303 CG3091-PC 32..295 36..283 203 22.6 Plus
CG3091-PA 303 CG3091-PA 32..295 36..283 203 22.6 Plus
pinta-PB 273 CG13848-PB 6..268 8..278 193 25.4 Plus
pinta-PA 273 CG13848-PA 6..268 8..278 193 25.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21234-PA 308 GI21234-PA 1..308 1..308 1225 69.2 Plus
Dmoj\GI21233-PA 313 GI21233-PA 8..313 3..308 830 47.7 Plus
Dmoj\GI13038-PA 318 GI13038-PA 8..318 2..308 675 43.4 Plus
Dmoj\GI16717-PA 308 GI16717-PA 5..308 4..308 636 42.5 Plus
Dmoj\GI13701-PA 312 GI13701-PA 4..312 3..308 617 44.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17331-PA 308 GL17331-PA 1..308 1..308 1403 81.8 Plus
Dper\GL17330-PA 311 GL17330-PA 6..311 3..308 820 47.1 Plus
Dper\GL16163-PA 311 GL16163-PA 5..311 4..308 667 41 Plus
Dper\GL26205-PA 313 GL26205-PA 1..313 1..308 657 43.1 Plus
Dper\GL16161-PA 313 GL16161-PA 1..313 1..308 651 43.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15770-PA 308 GA15770-PA 1..308 1..308 1410 82.1 Plus
Dpse\GA11913-PA 311 GA11913-PA 6..311 3..308 821 47.4 Plus
Dpse\GA28411-PA 311 GA28411-PA 5..311 4..308 667 41 Plus
Dpse\GA16352-PA 313 GA16352-PA 1..313 1..308 657 43.1 Plus
Dpse\GA28410-PA 313 GA28410-PA 1..313 1..308 652 43.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20589-PA 308 GM20589-PA 1..308 1..308 1593 96.1 Plus
Dsec\GM20588-PA 313 GM20588-PA 8..313 3..308 811 46.7 Plus
Dsec\GM14655-PA 311 GM14655-PA 5..311 4..308 650 42 Plus
Dsec\GM14034-PA 313 GM14034-PA 1..313 1..308 650 43.1 Plus
Dsec\GM14386-PA 290 GM14386-PA 1..290 1..308 631 42.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10061-PA 308 GD10061-PA 1..308 1..308 1573 95.1 Plus
Dsim\GD13840-PA 311 GD13840-PA 5..311 4..308 659 42.3 Plus
Dsim\GD22558-PA 313 GD22558-PA 1..313 1..308 649 43.1 Plus
Dsim\GD10670-PA 312 GD10670-PA 1..312 1..308 558 37.3 Plus
Dsim\GD21031-PA 306 GD21031-PA 3..306 5..308 531 35.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20839-PA 312 GJ20839-PA 8..312 4..308 1279 74.1 Plus
Dvir\GJ20838-PA 316 GJ20838-PA 12..316 4..308 771 46.9 Plus
Dvir\GJ12135-PA 310 GJ12135-PA 1..310 1..308 701 42.6 Plus
Dvir\GJ12461-PA 308 GJ12461-PA 5..308 4..308 662 44.1 Plus
Dvir\GJ12134-PA 318 GJ12134-PA 8..318 2..308 642 42.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15623-PA 309 GK15623-PA 5..309 4..308 1300 75.4 Plus
Dwil\GK15622-PA 313 GK15622-PA 9..313 4..308 816 46.9 Plus
Dwil\GK21135-PA 310 GK21135-PA 1..310 1..308 671 42.6 Plus
Dwil\GK21130-PA 318 GK21130-PA 6..318 2..308 662 44.1 Plus
Dwil\GK18277-PA 317 GK18277-PA 8..317 4..308 653 43.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22159-PA 308 GE22159-PA 1..308 1..308 1579 95.1 Plus
Dyak\GE22148-PA 313 GE22148-PA 8..313 3..308 826 48 Plus
Dyak\GE21129-PA 310 GE21129-PA 1..310 1..308 676 41.9 Plus
Dyak\GE18422-PA 313 GE18422-PA 1..313 1..308 671 43.8 Plus
Dyak\GE21443-PA 311 GE21443-PA 5..311 4..308 640 41.9 Plus

RE54230.hyp Sequence

Translation from 41 to 967

> RE54230.hyp
MANLRPLSAELRRIAETELNEVEERVPADLKALRDWLAKQPHLRARQDDQ
FLVGFLRGCKFSLEKTKSKLDHFYTIKTLMPELFGKRLVDERNLILCRSG
TYVRLPKPWGTDGPRLQLTNYEKFDPKEFKLLDLFRYQTMITEQSIREDD
HSNISGYVEIVDMAKMSLSFLAQLDFTLIKRMGIFAEKAQPTRLKGVHLI
NCPKEGVALLNLAKSLMPSKLQQRFHVYKNLEQLNEVIPREYLPEEYGGN
NGRIADIQAEAEKKLLSYESYFAEDSQYGVDEQLRPGKRVNADSIFGAEG
SFRKLDID*

RE54230.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG30339-PA 308 CG30339-PA 1..308 1..308 1588 100 Plus
CG12926-PA 313 CG12926-PA 8..313 3..308 795 46.7 Plus
CG33966-PA 310 CG33966-PA 1..310 1..308 672 42.6 Plus
CG33514-PA 311 CG33514-PA 5..311 4..308 644 42.3 Plus
CG31636-PB 313 CG31636-PB 1..313 1..308 640 42.8 Plus