BDGP Sequence Production Resources |
Search the DGRC for RE54320
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 543 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14110-RA |
Protein status: | RE54320.pep: gold |
Preliminary Size: | 960 |
Sequenced Size: | 1099 |
Gene | Date | Evidence |
---|---|---|
CG14110 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14110 | 2002-02-22 | Blastp of sequenced clone |
CG14110 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14110 | 2008-04-29 | Release 5.5 accounting |
CG14110 | 2008-08-15 | Release 5.9 accounting |
CG14110 | 2008-12-18 | 5.12 accounting |
1099 bp (1099 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089638
> RE54320.complete ATAGAAGTTGACCAACTGCAATGGGAGCCACTAGTGTCGGAGTTCCAGTC TGGAAGATTCAGCTACTGATTCTGCTGAGTGCAGTTGTTCTCACCATTCA AGCTGCTCCTGTCGAGGTAACCGAAGGAGTGACCCAACCCCCAGCCGAGA AGCTGCAAACGGAGTCTCGTTCCCGTAAAGATGAAGAGCTGGAACTAGAA GAAGACCTGGATGGACGTAATGCCTATATCAACAATCAGTTTGTGCCAAG CGAACCTGCAGAAGTCCTAGAGGATGTGCAGAATACGCCGCTCTACGAGA TCCTTCAAAAGCAGATGGAACAAGTGTTGGCCTCATCGGCTCCCAATGAC CCTGTCTACGAGCAGCACCGCGAGAAGCAGGATCGTCGCGATCAGAAACC ACCACACCAGCCACCGTACTTCTCCGGCGGAGATCGAGATGGTGATCTAC AGGATGACTACGAGGACGAGGAGGATCAGACGGATCAGGGTTATCCGTCG GACCCCGAGAAACCGGACGCCGTGTCAGATGCTCCCGAGGATGAGGACCC AGGCTACCAGGCACCTTCGTTGAGCCTTCCAACCACCACCACTCGCAAAC CGTACAGACGACGCAGCACAACCACTTTTCAGCCACGAACCACCAGGACA AGAACCACTGCTCAGCCCAGGATCTCGGAAAGTCCATTGAACCAAACCAG CACCACAGAGCAATCACCAAATGTGACCACCAGCACTCCACGGCCCAAGA TTGGTTCCAGCACCAAACCCAAGGCAAATCCTCAGCCGGGAAACAGCCTG CCAAGTGACCCGCAGGTTTACCAGCACAAGCGTCGCATCATCTTCAAGAC CATCTCAACGGGCTCGCAATTCGTCAACTCGCCAATTGGCGACCTAATGA TCAAGTTCTCAATCGGATTTGCCAAGCCAACCACTCCGGGTGGAGCTACC AGCACTGCGGGTTCACATAGTTCGTCCAGTGAGGCTTTACGTGCTCTTTC GCAAAACTTAATTCGAAATTTTGAACTTCAAAAACTAAGAAGAGCCAATA AAGTGCAAAAATATTAGATATACATTATTAACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14110-RA | 1202 | CG14110-RA | 32..1121 | 3..1092 | 5435 | 99.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 13375018..13375101 | 1..84 | 98 | -> | Plus |
chr3L | 13375154..13376152 | 85..1083 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14110-RA | 1..1047 | 21..1067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14110-RA | 1..1047 | 21..1067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14110-RA | 1..1047 | 21..1067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14110-RA | 1..1047 | 21..1067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14110-RA | 1..1047 | 21..1067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14110-RA | 1..1083 | 1..1083 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14110-RA | 1..1083 | 1..1083 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14110-RA | 3..1085 | 1..1083 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14110-RA | 1..1083 | 1..1083 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14110-RA | 3..1085 | 1..1083 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13384791..13384874 | 1..84 | 98 | -> | Plus |
3L | 13384927..13385925 | 85..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13384791..13384874 | 1..84 | 98 | -> | Plus |
3L | 13384927..13385925 | 85..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13384791..13384874 | 1..84 | 98 | -> | Plus |
3L | 13384927..13385925 | 85..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 13377891..13377974 | 1..84 | 98 | -> | Plus |
arm_3L | 13378027..13379025 | 85..1083 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 13378027..13379025 | 85..1083 | 100 | Plus | |
3L | 13377891..13377974 | 1..84 | 98 | -> | Plus |
Translation from 20 to 1066
> RE54320.pep MGATSVGVPVWKIQLLILLSAVVLTIQAAPVEVTEGVTQPPAEKLQTESR SRKDEELELEEDLDGRNAYINNQFVPSEPAEVLEDVQNTPLYEILQKQME QVLASSAPNDPVYEQHREKQDRRDQKPPHQPPYFSGGDRDGDLQDDYEDE EDQTDQGYPSDPEKPDAVSDAPEDEDPGYQAPSLSLPTTTTRKPYRRRST TTFQPRTTRTRTTAQPRISESPLNQTSTTEQSPNVTTSTPRPKIGSSTKP KANPQPGNSLPSDPQVYQHKRRIIFKTISTGSQFVNSPIGDLMIKFSIGF AKPTTPGGATSTAGSHSSSSEALRALSQNLIRNFELQKLRRANKVQKY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24042-PA | 332 | GF24042-PA | 19..331 | 26..347 | 825 | 66.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15639-PA | 350 | GG15639-PA | 1..350 | 1..348 | 1354 | 86 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17162-PA | 347 | GH17162-PA | 1..346 | 1..347 | 617 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14110-PA | 348 | CG14110-PA | 1..348 | 1..348 | 1799 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11777-PA | 341 | GI11777-PA | 18..341 | 20..348 | 644 | 48.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15713-PA | 356 | GL15713-PA | 1..355 | 1..347 | 790 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12766-PA | 356 | GA12766-PA | 1..355 | 1..347 | 791 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25417-PA | 348 | GM25417-PA | 1..348 | 1..348 | 1563 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14447-PA | 348 | GD14447-PA | 1..348 | 1..348 | 1536 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13479-PA | 351 | GJ13479-PA | 28..350 | 26..347 | 576 | 47 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17442-PA | 374 | GK17442-PA | 5..374 | 7..348 | 553 | 43.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21967-PA | 348 | GE21967-PA | 1..348 | 1..348 | 1459 | 87.9 | Plus |
Translation from 20 to 1066
> RE54320.hyp MGATSVGVPVWKIQLLILLSAVVLTIQAAPVEVTEGVTQPPAEKLQTESR SRKDEELELEEDLDGRNAYINNQFVPSEPAEVLEDVQNTPLYEILQKQME QVLASSAPNDPVYEQHREKQDRRDQKPPHQPPYFSGGDRDGDLQDDYEDE EDQTDQGYPSDPEKPDAVSDAPEDEDPGYQAPSLSLPTTTTRKPYRRRST TTFQPRTTRTRTTAQPRISESPLNQTSTTEQSPNVTTSTPRPKIGSSTKP KANPQPGNSLPSDPQVYQHKRRIIFKTISTGSQFVNSPIGDLMIKFSIGF AKPTTPGGATSTAGSHSSSSEALRALSQNLIRNFELQKLRRANKVQKY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14110-PA | 348 | CG14110-PA | 1..348 | 1..348 | 1799 | 100 | Plus |