Clone RE54320 Report

Search the DGRC for RE54320

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:543
Well:20
Vector:pFlc-1
Associated Gene/TranscriptCG14110-RA
Protein status:RE54320.pep: gold
Preliminary Size:960
Sequenced Size:1099

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14110 2002-01-01 Sim4 clustering to Release 2
CG14110 2002-02-22 Blastp of sequenced clone
CG14110 2003-01-01 Sim4 clustering to Release 3
CG14110 2008-04-29 Release 5.5 accounting
CG14110 2008-08-15 Release 5.9 accounting
CG14110 2008-12-18 5.12 accounting

Clone Sequence Records

RE54320.complete Sequence

1099 bp (1099 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089638

> RE54320.complete
ATAGAAGTTGACCAACTGCAATGGGAGCCACTAGTGTCGGAGTTCCAGTC
TGGAAGATTCAGCTACTGATTCTGCTGAGTGCAGTTGTTCTCACCATTCA
AGCTGCTCCTGTCGAGGTAACCGAAGGAGTGACCCAACCCCCAGCCGAGA
AGCTGCAAACGGAGTCTCGTTCCCGTAAAGATGAAGAGCTGGAACTAGAA
GAAGACCTGGATGGACGTAATGCCTATATCAACAATCAGTTTGTGCCAAG
CGAACCTGCAGAAGTCCTAGAGGATGTGCAGAATACGCCGCTCTACGAGA
TCCTTCAAAAGCAGATGGAACAAGTGTTGGCCTCATCGGCTCCCAATGAC
CCTGTCTACGAGCAGCACCGCGAGAAGCAGGATCGTCGCGATCAGAAACC
ACCACACCAGCCACCGTACTTCTCCGGCGGAGATCGAGATGGTGATCTAC
AGGATGACTACGAGGACGAGGAGGATCAGACGGATCAGGGTTATCCGTCG
GACCCCGAGAAACCGGACGCCGTGTCAGATGCTCCCGAGGATGAGGACCC
AGGCTACCAGGCACCTTCGTTGAGCCTTCCAACCACCACCACTCGCAAAC
CGTACAGACGACGCAGCACAACCACTTTTCAGCCACGAACCACCAGGACA
AGAACCACTGCTCAGCCCAGGATCTCGGAAAGTCCATTGAACCAAACCAG
CACCACAGAGCAATCACCAAATGTGACCACCAGCACTCCACGGCCCAAGA
TTGGTTCCAGCACCAAACCCAAGGCAAATCCTCAGCCGGGAAACAGCCTG
CCAAGTGACCCGCAGGTTTACCAGCACAAGCGTCGCATCATCTTCAAGAC
CATCTCAACGGGCTCGCAATTCGTCAACTCGCCAATTGGCGACCTAATGA
TCAAGTTCTCAATCGGATTTGCCAAGCCAACCACTCCGGGTGGAGCTACC
AGCACTGCGGGTTCACATAGTTCGTCCAGTGAGGCTTTACGTGCTCTTTC
GCAAAACTTAATTCGAAATTTTGAACTTCAAAAACTAAGAAGAGCCAATA
AAGTGCAAAAATATTAGATATACATTATTAACGAAAAAAAAAAAAAAAA

RE54320.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14110-RA 1202 CG14110-RA 32..1121 3..1092 5435 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13375152..13376152 83..1083 4885 99.2 Plus
chr3L 24539361 chr3L 13375020..13375101 3..84 410 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13384925..13385934 83..1092 5035 99.9 Plus
3L 28110227 3L 13384793..13384874 3..84 410 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13378025..13379034 83..1092 5035 99.9 Plus
3L 28103327 3L 13377893..13377974 3..84 410 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:27:48 has no hits.

RE54320.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:28:50 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13375018..13375101 1..84 98 -> Plus
chr3L 13375154..13376152 85..1083 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:15 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
CG14110-RA 1..1047 21..1067 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:37:32 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
CG14110-RA 1..1047 21..1067 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:16:12 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
CG14110-RA 1..1047 21..1067 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:21 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
CG14110-RA 1..1047 21..1067 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:27:54 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
CG14110-RA 1..1047 21..1067 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:48 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
CG14110-RA 1..1083 1..1083 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:37:32 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
CG14110-RA 1..1083 1..1083 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:16:12 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
CG14110-RA 3..1085 1..1083 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:21 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
CG14110-RA 1..1083 1..1083 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:54 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
CG14110-RA 3..1085 1..1083 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:28:50 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13384791..13384874 1..84 98 -> Plus
3L 13384927..13385925 85..1083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:28:50 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13384791..13384874 1..84 98 -> Plus
3L 13384927..13385925 85..1083 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:28:50 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13384791..13384874 1..84 98 -> Plus
3L 13384927..13385925 85..1083 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:16:12 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13377891..13377974 1..84 98 -> Plus
arm_3L 13378027..13379025 85..1083 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:25 Download gff for RE54320.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13378027..13379025 85..1083 100   Plus
3L 13377891..13377974 1..84 98 -> Plus

RE54320.pep Sequence

Translation from 20 to 1066

> RE54320.pep
MGATSVGVPVWKIQLLILLSAVVLTIQAAPVEVTEGVTQPPAEKLQTESR
SRKDEELELEEDLDGRNAYINNQFVPSEPAEVLEDVQNTPLYEILQKQME
QVLASSAPNDPVYEQHREKQDRRDQKPPHQPPYFSGGDRDGDLQDDYEDE
EDQTDQGYPSDPEKPDAVSDAPEDEDPGYQAPSLSLPTTTTRKPYRRRST
TTFQPRTTRTRTTAQPRISESPLNQTSTTEQSPNVTTSTPRPKIGSSTKP
KANPQPGNSLPSDPQVYQHKRRIIFKTISTGSQFVNSPIGDLMIKFSIGF
AKPTTPGGATSTAGSHSSSSEALRALSQNLIRNFELQKLRRANKVQKY*

RE54320.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24042-PA 332 GF24042-PA 19..331 26..347 825 66.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15639-PA 350 GG15639-PA 1..350 1..348 1354 86 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17162-PA 347 GH17162-PA 1..346 1..347 617 47.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14110-PA 348 CG14110-PA 1..348 1..348 1799 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11777-PA 341 GI11777-PA 18..341 20..348 644 48.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15713-PA 356 GL15713-PA 1..355 1..347 790 58 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12766-PA 356 GA12766-PA 1..355 1..347 791 58 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25417-PA 348 GM25417-PA 1..348 1..348 1563 91.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14447-PA 348 GD14447-PA 1..348 1..348 1536 93.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13479-PA 351 GJ13479-PA 28..350 26..347 576 47 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17442-PA 374 GK17442-PA 5..374 7..348 553 43.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21967-PA 348 GE21967-PA 1..348 1..348 1459 87.9 Plus

RE54320.hyp Sequence

Translation from 20 to 1066

> RE54320.hyp
MGATSVGVPVWKIQLLILLSAVVLTIQAAPVEVTEGVTQPPAEKLQTESR
SRKDEELELEEDLDGRNAYINNQFVPSEPAEVLEDVQNTPLYEILQKQME
QVLASSAPNDPVYEQHREKQDRRDQKPPHQPPYFSGGDRDGDLQDDYEDE
EDQTDQGYPSDPEKPDAVSDAPEDEDPGYQAPSLSLPTTTTRKPYRRRST
TTFQPRTTRTRTTAQPRISESPLNQTSTTEQSPNVTTSTPRPKIGSSTKP
KANPQPGNSLPSDPQVYQHKRRIIFKTISTGSQFVNSPIGDLMIKFSIGF
AKPTTPGGATSTAGSHSSSSEALRALSQNLIRNFELQKLRRANKVQKY*

RE54320.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14110-PA 348 CG14110-PA 1..348 1..348 1799 100 Plus