BDGP Sequence Production Resources |
Search the DGRC for RE54322
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 543 |
Well: | 22 |
Vector: | pFlc-1 |
Associated Gene/Transcript | vimar-RB |
Protein status: | RE54322.pep: gold |
Sequenced Size: | 2937 |
Gene | Date | Evidence |
---|---|---|
vimar-RB | 2010-11-11 | Gleaning Pick By Joe Carlson |
2937 bp assembled on 2011-01-31
GenBank Submission: BT125966.1
> RE54322.complete GACGTCTGAACGCGATTCGGAAAATACGGATTACACGGATAATACGAATT ATACGGATATTGCGGAAGTTGAACGGAGACGCGACTGAAAGAAAGCCGTG AAATGTGTTCAGTTGCGCGCAGCAGTCATTAGCCTATCAGCAGTGTTTGT TACAAGCTAACAGTGATACAACGTGCCTGGAATCGCAACCAACGCAGAGC AAGAAAAGCAGAAAAGCATAAAAACGGAAGAAGCAGCAGCGGAATAATCA ACAAAGGCGGCAAACATGGCGACTGAAATCGACGATTTGATTGAAAAGCT GAAGACGACCAGTGTCAGTCCGGCGAACACGACCAACTTGCTCTGCGAGA TCTCGGCGACGAAGGACCCCAAACTTTTCGATAAGCACGAGCTGGCAGAG TGCTTTCTGGGCCTCACCAAGTGCGACGACACAAACGTGCGCAAGGAGGC GGCCAAGTGCATTGCGGAGATCACCAAGTCCGAGGTGCAGCGCAAGAAGT TCACCAAGAGGAATATAATAGCCGCATTTCTGGAGTGCTTGCGACAAGTG CCCACGTCCGACGGCAGTATGGAGCTGCCCATACAGATTTGTCGGGCACT GGGCAATATCTGCTACCTAAACGACGAAGCCAGGGACTTAATACTCGAGC TGGAGGGCGATGCTGTTCTACTGCGACTGCTGGACATCACAACCATCGAG GACGTGGCCAATGCGGCGCAATTCATCAAAGTGCGCGGCGGCTTGCTGTC CAACTATTTGCTCGGAGGCGAGGGCTTGGCCAAGCGGGCCATGGAGTTGG GCGTGATGAAGAAGCTGCAAGGCATCATCGACATTGGCGCCTCCAATGTG GAACAGCATGAGGATCTGCTGCTGAACACGCTTCCACTGCTCAGTATACT CACCGAGAACGTGTCGGATCTGAACTTCGACTCTTCCCTGAATATCCAGC TGTCTCGCATTCTGGCCGCTTCCACGAATCCCGATCTTGCCGAGATGTGC CTGGAGCTGCTCCATTACCAGGCGGAGAGCGACGAAGTCAAGCTTATTTT GGCCAAGGACGGTCTGTGCGAAACCATCTACAACCTGCTGGAAAAGTACA AGACTCTGGCCAGCACAAGTGAGGCCAGGGCGTTGATGAAACTCGCCTGC GAACTCATCGTATTAATCCTTACTGGTGATGACTCAATGCACTATTTGTA CACCACGCCGCTGCTGAAGAACATGGTCGATTGGCTGGACTCGACGGACA TCGATCTGCTAACCACCGGCGTGCTGGCCCTGGGCAACTTTGCGCGCACC GATAGCCACTGCATCTACTTTGTGGAGCAGCAGACCATGAACAAGCTGCT CGAGGTGCTGGCCAAGAACAACGGCGTCAAGGACGATGTGCGCCTGCAGC ACGCTCTTCTCTCCGCGCTGCGCAACCTGGTCATCCCGAAGCCAAACAAG AACGCGGTAATCCAGGCGGGCCTGGTGCAGACCATTCTTCCCATGCTCGA AATACACCAGCCACCAGTCGTCTTCAAGCTGCTGGGCACACTTCGCATGA CCGTCGACGGACAGGAGAAACTCGCACTGGAGTTGCTGAAGAACAAGACT CTGATCGAGCAGCTGGTGCACTGGAGCAAATCGTCGGACTATGCGGGCGT CACCGGCGAGTCTCTGCGCCTCATGGCCTGGCTGATCAAGCACGCCTACC TCAGCAAAATCGCATACGCACTGCCGCGCAAGGGCGATGCACCCGCCGAA CAGATTGCCGACAAGATTCCGCTAACGCAAGACTACGATCGCAGTAGCTT GAGCGAGTTCCTTGCCAACGAGGGCACCGTGGAGGCCATGGTCAGCATGC TCACAGCTCAGCACCTGGTCATGCAGAACGAGGCGCTGATTGCCCTGTGC ATCCTGTCCGTGGTGTACCTGTCGCAGCCCAGCGAGGCGGCGCAGGCCCA GCTGCTGCAGGACGAGCTGGTCAAGTGCGAGGTCGGCAAGAAGTTGGCCG AGCTCATCAGCAAGTCGTCGGACACGATGACCAAGGAGATTGTCGAGAAC CTGCAGAATTGCGTGAACTTGCTCAAATCTTCCGAGCAGCTGGTGGCGCA TCTGGAACAGCATAACATCAACGAGCTGCTGAAGTCTATACCCATTCTCA CCGAATACTGCACCTTGTAAGAAAACGGGGACTGTCATTGCATTTATCCC AGCACCGCAGGATGCCTCACAGTGGGATGGGTCGATTTGCACGATTGAAC ATAACATAAATACTTTAGGGGTAAGCAGTTATCTTTGGAAGTTATCTGTG TGGTCTTACCAAGAGAAACGCCAATACTTATTCGTAACGATACAAAGATT AATACGTTGCGCTAATGTGCTAAACTCCACTTTACTACTTAATAACAATT TTGTTAAATTGTAATTAAATCCACTCTCTTGAGATTCACTGACGTTGCAC GATTCCAAATAGCCAAAGATAAATGTTTGCCACTATTAGAGCATGTTTTA AAAAAAATCAGCCCACCCTTAGCCACACAGACACACTCAGAACCGGAGAA AATAGTAGTTTTCACCCCAAAGCAACGATTCAGATGTAGACTTGACTGTA GTTTGGTAAGAAGAAAGTGCAGATTCACAAGTTAAGCAGTTAATCAGTTA AGCACACTGGAACACGCGAACACGAGAGGAGCAGAAAGTATTTTTTAGAC GCAAGCGTATTTTGACTGCATTTATGAAGAGAATCCGATGTAGTAAGGAG TCACAAATCGTATGAATATTTATAGCATACATACATAACATATACGTATA AATATAATAATATTAATAATTTAGCATATTAATCTTTTCTGTTACATGAT TTTTAAGAGCACAATAACAACAAATCGTGGTGATATCGCTAAATATATTT AATAAATGTATTTTATGATTGTAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 2863211..2864569 | 2922..1565 | 6670 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 2865103..2866008 | 1178..273 | 4515 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 2864627..2865014 | 1565..1178 | 1940 | 100 | Minus |
chr2R | 21145070 | chr2R | 2872819..2873093 | 276..2 | 1360 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 6975800..6977158 | 2923..1565 | 6780 | 99.9 | Minus |
2R | 25286936 | 2R | 6977692..6978597 | 1178..273 | 4530 | 100 | Minus |
2R | 25286936 | 2R | 6977216..6977603 | 1565..1178 | 1940 | 100 | Minus |
2R | 25286936 | 2R | 6985408..6985682 | 276..2 | 1360 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 6976999..6978357 | 2923..1565 | 6780 | 99.9 | Minus |
2R | 25260384 | 2R | 6978891..6979796 | 1178..273 | 4530 | 100 | Minus |
2R | 25260384 | 2R | 6978415..6978802 | 1565..1178 | 1940 | 100 | Minus |
2R | 25260384 | 2R | 6986607..6986881 | 276..2 | 1360 | 99.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-C | 11124 | TART-C TARTC 11124bp | 927..1003 | 2497..2574 | 135 | 68.8 | Plus |
Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 2698..2789 | 1323..1411 | 128 | 66 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 2863211..2864568 | 1566..2922 | 97 | <- | Minus |
chr2R | 2864627..2865013 | 1179..1565 | 100 | <- | Minus |
chr2R | 2865103..2866008 | 273..1178 | 99 | <- | Minus |
chr2R | 2872823..2873093 | 1..272 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vimar-RB | 1..1905 | 266..2170 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vimar-RB | 1..1905 | 266..2170 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vimar-RB | 1..1905 | 266..2170 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vimar-RB | 26..2948 | 1..2922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vimar-RB | 29..2951 | 1..2922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vimar-RB | 29..2951 | 1..2922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6975801..6977157 | 1566..2922 | 99 | <- | Minus |
2R | 6977216..6977602 | 1179..1565 | 100 | <- | Minus |
2R | 6977692..6978597 | 273..1178 | 100 | <- | Minus |
2R | 6985412..6985682 | 1..272 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6975801..6977157 | 1566..2922 | 99 | <- | Minus |
2R | 6977216..6977602 | 1179..1565 | 100 | <- | Minus |
2R | 6977692..6978597 | 273..1178 | 100 | <- | Minus |
2R | 6985412..6985682 | 1..272 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6975801..6977157 | 1566..2922 | 99 | <- | Minus |
2R | 6977216..6977602 | 1179..1565 | 100 | <- | Minus |
2R | 6977692..6978597 | 273..1178 | 100 | <- | Minus |
2R | 6985412..6985682 | 1..272 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 2863306..2864662 | 1566..2922 | 99 | <- | Minus |
arm_2R | 2864721..2865107 | 1179..1565 | 100 | <- | Minus |
arm_2R | 2865197..2866102 | 273..1178 | 100 | <- | Minus |
arm_2R | 2872917..2873187 | 1..272 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6977000..6978356 | 1566..2922 | 99 | <- | Minus |
2R | 6978415..6978801 | 1179..1565 | 100 | <- | Minus |
2R | 6978891..6979796 | 273..1178 | 100 | <- | Minus |
2R | 6986611..6986881 | 1..272 | 99 | Minus |
Translation from 265 to 2169
> RE54322.pep MATEIDDLIEKLKTTSVSPANTTNLLCEISATKDPKLFDKHELAECFLGL TKCDDTNVRKEAAKCIAEITKSEVQRKKFTKRNIIAAFLECLRQVPTSDG SMELPIQICRALGNICYLNDEARDLILELEGDAVLLRLLDITTIEDVANA AQFIKVRGGLLSNYLLGGEGLAKRAMELGVMKKLQGIIDIGASNVEQHED LLLNTLPLLSILTENVSDLNFDSSLNIQLSRILAASTNPDLAEMCLELLH YQAESDEVKLILAKDGLCETIYNLLEKYKTLASTSEARALMKLACELIVL ILTGDDSMHYLYTTPLLKNMVDWLDSTDIDLLTTGVLALGNFARTDSHCI YFVEQQTMNKLLEVLAKNNGVKDDVRLQHALLSALRNLVIPKPNKNAVIQ AGLVQTILPMLEIHQPPVVFKLLGTLRMTVDGQEKLALELLKNKTLIEQL VHWSKSSDYAGVTGESLRLMAWLIKHAYLSKIAYALPRKGDAPAEQIADK IPLTQDYDRSSLSEFLANEGTVEAMVSMLTAQHLVMQNEALIALCILSVV YLSQPSEAAQAQLLQDELVKCEVGKKLAELISKSSDTMTKEIVENLQNCV NLLKSSEQLVAHLEQHNINELLKSIPILTEYCTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11753-PA | 632 | GF11753-PA | 1..632 | 5..634 | 3076 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10781-PA | 673 | GG10781-PA | 41..673 | 2..634 | 3241 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20393-PA | 631 | GH20393-PA | 1..631 | 5..634 | 3008 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vimar-PB | 634 | CG3572-PB | 1..634 | 1..634 | 3169 | 100 | Plus |
vimar-PC | 635 | CG3572-PC | 1..635 | 1..634 | 3157 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20062-PA | 571 | GI20062-PA | 3..571 | 67..634 | 2726 | 92.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10958-PA | 639 | GL10958-PA | 3..639 | 2..634 | 3053 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24543-PA | 639 | GA24543-PA | 3..639 | 2..634 | 3053 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20831-PA | 761 | GM20831-PA | 130..761 | 3..634 | 3254 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10283-PA | 579 | GD10283-PA | 5..579 | 3..584 | 2838 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14960-PA | 631 | GJ14960-PA | 1..631 | 5..634 | 3001 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21536-PA | 666 | GK21536-PA | 32..666 | 1..634 | 3022 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24302-PA | 533 | GE24302-PA | 1..533 | 102..634 | 2746 | 98.9 | Plus |
Translation from 265 to 2169
> RE54322.hyp MATEIDDLIEKLKTTSVSPANTTNLLCEISATKDPKLFDKHELAECFLGL TKCDDTNVRKEAAKCIAEITKSEVQRKKFTKRNIIAAFLECLRQVPTSDG SMELPIQICRALGNICYLNDEARDLILELEGDAVLLRLLDITTIEDVANA AQFIKVRGGLLSNYLLGGEGLAKRAMELGVMKKLQGIIDIGASNVEQHED LLLNTLPLLSILTENVSDLNFDSSLNIQLSRILAASTNPDLAEMCLELLH YQAESDEVKLILAKDGLCETIYNLLEKYKTLASTSEARALMKLACELIVL ILTGDDSMHYLYTTPLLKNMVDWLDSTDIDLLTTGVLALGNFARTDSHCI YFVEQQTMNKLLEVLAKNNGVKDDVRLQHALLSALRNLVIPKPNKNAVIQ AGLVQTILPMLEIHQPPVVFKLLGTLRMTVDGQEKLALELLKNKTLIEQL VHWSKSSDYAGVTGESLRLMAWLIKHAYLSKIAYALPRKGDAPAEQIADK IPLTQDYDRSSLSEFLANEGTVEAMVSMLTAQHLVMQNEALIALCILSVV YLSQPSEAAQAQLLQDELVKCEVGKKLAELISKSSDTMTKEIVENLQNCV NLLKSSEQLVAHLEQHNINELLKSIPILTEYCTL*