Clone RE54322 Report

Search the DGRC for RE54322

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:543
Well:22
Vector:pFlc-1
Associated Gene/Transcriptvimar-RB
Protein status:RE54322.pep: gold
Sequenced Size:2937

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
vimar-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

RE54322.complete Sequence

2937 bp assembled on 2011-01-31

GenBank Submission: BT125966.1

> RE54322.complete
GACGTCTGAACGCGATTCGGAAAATACGGATTACACGGATAATACGAATT
ATACGGATATTGCGGAAGTTGAACGGAGACGCGACTGAAAGAAAGCCGTG
AAATGTGTTCAGTTGCGCGCAGCAGTCATTAGCCTATCAGCAGTGTTTGT
TACAAGCTAACAGTGATACAACGTGCCTGGAATCGCAACCAACGCAGAGC
AAGAAAAGCAGAAAAGCATAAAAACGGAAGAAGCAGCAGCGGAATAATCA
ACAAAGGCGGCAAACATGGCGACTGAAATCGACGATTTGATTGAAAAGCT
GAAGACGACCAGTGTCAGTCCGGCGAACACGACCAACTTGCTCTGCGAGA
TCTCGGCGACGAAGGACCCCAAACTTTTCGATAAGCACGAGCTGGCAGAG
TGCTTTCTGGGCCTCACCAAGTGCGACGACACAAACGTGCGCAAGGAGGC
GGCCAAGTGCATTGCGGAGATCACCAAGTCCGAGGTGCAGCGCAAGAAGT
TCACCAAGAGGAATATAATAGCCGCATTTCTGGAGTGCTTGCGACAAGTG
CCCACGTCCGACGGCAGTATGGAGCTGCCCATACAGATTTGTCGGGCACT
GGGCAATATCTGCTACCTAAACGACGAAGCCAGGGACTTAATACTCGAGC
TGGAGGGCGATGCTGTTCTACTGCGACTGCTGGACATCACAACCATCGAG
GACGTGGCCAATGCGGCGCAATTCATCAAAGTGCGCGGCGGCTTGCTGTC
CAACTATTTGCTCGGAGGCGAGGGCTTGGCCAAGCGGGCCATGGAGTTGG
GCGTGATGAAGAAGCTGCAAGGCATCATCGACATTGGCGCCTCCAATGTG
GAACAGCATGAGGATCTGCTGCTGAACACGCTTCCACTGCTCAGTATACT
CACCGAGAACGTGTCGGATCTGAACTTCGACTCTTCCCTGAATATCCAGC
TGTCTCGCATTCTGGCCGCTTCCACGAATCCCGATCTTGCCGAGATGTGC
CTGGAGCTGCTCCATTACCAGGCGGAGAGCGACGAAGTCAAGCTTATTTT
GGCCAAGGACGGTCTGTGCGAAACCATCTACAACCTGCTGGAAAAGTACA
AGACTCTGGCCAGCACAAGTGAGGCCAGGGCGTTGATGAAACTCGCCTGC
GAACTCATCGTATTAATCCTTACTGGTGATGACTCAATGCACTATTTGTA
CACCACGCCGCTGCTGAAGAACATGGTCGATTGGCTGGACTCGACGGACA
TCGATCTGCTAACCACCGGCGTGCTGGCCCTGGGCAACTTTGCGCGCACC
GATAGCCACTGCATCTACTTTGTGGAGCAGCAGACCATGAACAAGCTGCT
CGAGGTGCTGGCCAAGAACAACGGCGTCAAGGACGATGTGCGCCTGCAGC
ACGCTCTTCTCTCCGCGCTGCGCAACCTGGTCATCCCGAAGCCAAACAAG
AACGCGGTAATCCAGGCGGGCCTGGTGCAGACCATTCTTCCCATGCTCGA
AATACACCAGCCACCAGTCGTCTTCAAGCTGCTGGGCACACTTCGCATGA
CCGTCGACGGACAGGAGAAACTCGCACTGGAGTTGCTGAAGAACAAGACT
CTGATCGAGCAGCTGGTGCACTGGAGCAAATCGTCGGACTATGCGGGCGT
CACCGGCGAGTCTCTGCGCCTCATGGCCTGGCTGATCAAGCACGCCTACC
TCAGCAAAATCGCATACGCACTGCCGCGCAAGGGCGATGCACCCGCCGAA
CAGATTGCCGACAAGATTCCGCTAACGCAAGACTACGATCGCAGTAGCTT
GAGCGAGTTCCTTGCCAACGAGGGCACCGTGGAGGCCATGGTCAGCATGC
TCACAGCTCAGCACCTGGTCATGCAGAACGAGGCGCTGATTGCCCTGTGC
ATCCTGTCCGTGGTGTACCTGTCGCAGCCCAGCGAGGCGGCGCAGGCCCA
GCTGCTGCAGGACGAGCTGGTCAAGTGCGAGGTCGGCAAGAAGTTGGCCG
AGCTCATCAGCAAGTCGTCGGACACGATGACCAAGGAGATTGTCGAGAAC
CTGCAGAATTGCGTGAACTTGCTCAAATCTTCCGAGCAGCTGGTGGCGCA
TCTGGAACAGCATAACATCAACGAGCTGCTGAAGTCTATACCCATTCTCA
CCGAATACTGCACCTTGTAAGAAAACGGGGACTGTCATTGCATTTATCCC
AGCACCGCAGGATGCCTCACAGTGGGATGGGTCGATTTGCACGATTGAAC
ATAACATAAATACTTTAGGGGTAAGCAGTTATCTTTGGAAGTTATCTGTG
TGGTCTTACCAAGAGAAACGCCAATACTTATTCGTAACGATACAAAGATT
AATACGTTGCGCTAATGTGCTAAACTCCACTTTACTACTTAATAACAATT
TTGTTAAATTGTAATTAAATCCACTCTCTTGAGATTCACTGACGTTGCAC
GATTCCAAATAGCCAAAGATAAATGTTTGCCACTATTAGAGCATGTTTTA
AAAAAAATCAGCCCACCCTTAGCCACACAGACACACTCAGAACCGGAGAA
AATAGTAGTTTTCACCCCAAAGCAACGATTCAGATGTAGACTTGACTGTA
GTTTGGTAAGAAGAAAGTGCAGATTCACAAGTTAAGCAGTTAATCAGTTA
AGCACACTGGAACACGCGAACACGAGAGGAGCAGAAAGTATTTTTTAGAC
GCAAGCGTATTTTGACTGCATTTATGAAGAGAATCCGATGTAGTAAGGAG
TCACAAATCGTATGAATATTTATAGCATACATACATAACATATACGTATA
AATATAATAATATTAATAATTTAGCATATTAATCTTTTCTGTTACATGAT
TTTTAAGAGCACAATAACAACAAATCGTGGTGATATCGCTAAATATATTT
AATAAATGTATTTTATGATTGTAAAAAAAAAAAAAAA

RE54322.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2863211..2864569 2922..1565 6670 99.6 Minus
chr2R 21145070 chr2R 2865103..2866008 1178..273 4515 99.9 Minus
chr2R 21145070 chr2R 2864627..2865014 1565..1178 1940 100 Minus
chr2R 21145070 chr2R 2872819..2873093 276..2 1360 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6975800..6977158 2923..1565 6780 99.9 Minus
2R 25286936 2R 6977692..6978597 1178..273 4530 100 Minus
2R 25286936 2R 6977216..6977603 1565..1178 1940 100 Minus
2R 25286936 2R 6985408..6985682 276..2 1360 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6976999..6978357 2923..1565 6780 99.9 Minus
2R 25260384 2R 6978891..6979796 1178..273 4530 100 Minus
2R 25260384 2R 6978415..6978802 1565..1178 1940 100 Minus
2R 25260384 2R 6986607..6986881 276..2 1360 99.6 Minus
Blast to na_te.dros performed 2019-03-17 01:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 927..1003 2497..2574 135 68.8 Plus
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 2698..2789 1323..1411 128 66 Plus

RE54322.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:36:37 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2863211..2864568 1566..2922 97 <- Minus
chr2R 2864627..2865013 1179..1565 100 <- Minus
chr2R 2865103..2866008 273..1178 99 <- Minus
chr2R 2872823..2873093 1..272 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-31 13:12:15 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
vimar-RB 1..1905 266..2170 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:44:15 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
vimar-RB 1..1905 266..2170 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:03:09 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
vimar-RB 1..1905 266..2170 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-31 13:12:14 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
vimar-RB 26..2948 1..2922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:44:15 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
vimar-RB 29..2951 1..2922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:03:09 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
vimar-RB 29..2951 1..2922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:36:37 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6975801..6977157 1566..2922 99 <- Minus
2R 6977216..6977602 1179..1565 100 <- Minus
2R 6977692..6978597 273..1178 100 <- Minus
2R 6985412..6985682 1..272 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:36:37 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6975801..6977157 1566..2922 99 <- Minus
2R 6977216..6977602 1179..1565 100 <- Minus
2R 6977692..6978597 273..1178 100 <- Minus
2R 6985412..6985682 1..272 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:36:37 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6975801..6977157 1566..2922 99 <- Minus
2R 6977216..6977602 1179..1565 100 <- Minus
2R 6977692..6978597 273..1178 100 <- Minus
2R 6985412..6985682 1..272 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:44:15 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2863306..2864662 1566..2922 99 <- Minus
arm_2R 2864721..2865107 1179..1565 100 <- Minus
arm_2R 2865197..2866102 273..1178 100 <- Minus
arm_2R 2872917..2873187 1..272 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:56:35 Download gff for RE54322.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6977000..6978356 1566..2922 99 <- Minus
2R 6978415..6978801 1179..1565 100 <- Minus
2R 6978891..6979796 273..1178 100 <- Minus
2R 6986611..6986881 1..272 99   Minus

RE54322.pep Sequence

Translation from 265 to 2169

> RE54322.pep
MATEIDDLIEKLKTTSVSPANTTNLLCEISATKDPKLFDKHELAECFLGL
TKCDDTNVRKEAAKCIAEITKSEVQRKKFTKRNIIAAFLECLRQVPTSDG
SMELPIQICRALGNICYLNDEARDLILELEGDAVLLRLLDITTIEDVANA
AQFIKVRGGLLSNYLLGGEGLAKRAMELGVMKKLQGIIDIGASNVEQHED
LLLNTLPLLSILTENVSDLNFDSSLNIQLSRILAASTNPDLAEMCLELLH
YQAESDEVKLILAKDGLCETIYNLLEKYKTLASTSEARALMKLACELIVL
ILTGDDSMHYLYTTPLLKNMVDWLDSTDIDLLTTGVLALGNFARTDSHCI
YFVEQQTMNKLLEVLAKNNGVKDDVRLQHALLSALRNLVIPKPNKNAVIQ
AGLVQTILPMLEIHQPPVVFKLLGTLRMTVDGQEKLALELLKNKTLIEQL
VHWSKSSDYAGVTGESLRLMAWLIKHAYLSKIAYALPRKGDAPAEQIADK
IPLTQDYDRSSLSEFLANEGTVEAMVSMLTAQHLVMQNEALIALCILSVV
YLSQPSEAAQAQLLQDELVKCEVGKKLAELISKSSDTMTKEIVENLQNCV
NLLKSSEQLVAHLEQHNINELLKSIPILTEYCTL*

RE54322.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11753-PA 632 GF11753-PA 1..632 5..634 3076 94.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10781-PA 673 GG10781-PA 41..673 2..634 3241 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20393-PA 631 GH20393-PA 1..631 5..634 3008 92.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
vimar-PB 634 CG3572-PB 1..634 1..634 3169 100 Plus
vimar-PC 635 CG3572-PC 1..635 1..634 3157 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20062-PA 571 GI20062-PA 3..571 67..634 2726 92.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10958-PA 639 GL10958-PA 3..639 2..634 3053 93.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24543-PA 639 GA24543-PA 3..639 2..634 3053 93.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20831-PA 761 GM20831-PA 130..761 3..634 3254 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10283-PA 579 GD10283-PA 5..579 3..584 2838 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14960-PA 631 GJ14960-PA 1..631 5..634 3001 91.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21536-PA 666 GK21536-PA 32..666 1..634 3022 91.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24302-PA 533 GE24302-PA 1..533 102..634 2746 98.9 Plus

RE54322.hyp Sequence

Translation from 265 to 2169

> RE54322.hyp
MATEIDDLIEKLKTTSVSPANTTNLLCEISATKDPKLFDKHELAECFLGL
TKCDDTNVRKEAAKCIAEITKSEVQRKKFTKRNIIAAFLECLRQVPTSDG
SMELPIQICRALGNICYLNDEARDLILELEGDAVLLRLLDITTIEDVANA
AQFIKVRGGLLSNYLLGGEGLAKRAMELGVMKKLQGIIDIGASNVEQHED
LLLNTLPLLSILTENVSDLNFDSSLNIQLSRILAASTNPDLAEMCLELLH
YQAESDEVKLILAKDGLCETIYNLLEKYKTLASTSEARALMKLACELIVL
ILTGDDSMHYLYTTPLLKNMVDWLDSTDIDLLTTGVLALGNFARTDSHCI
YFVEQQTMNKLLEVLAKNNGVKDDVRLQHALLSALRNLVIPKPNKNAVIQ
AGLVQTILPMLEIHQPPVVFKLLGTLRMTVDGQEKLALELLKNKTLIEQL
VHWSKSSDYAGVTGESLRLMAWLIKHAYLSKIAYALPRKGDAPAEQIADK
IPLTQDYDRSSLSEFLANEGTVEAMVSMLTAQHLVMQNEALIALCILSVV
YLSQPSEAAQAQLLQDELVKCEVGKKLAELISKSSDTMTKEIVENLQNCV
NLLKSSEQLVAHLEQHNINELLKSIPILTEYCTL*

RE54322.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
vimar-PB 634 CG3572-PB 1..634 1..634 3169 100 Plus
vimar-PC 635 CG3572-PC 1..635 1..634 3157 99.8 Plus