BDGP Sequence Production Resources |
Search the DGRC for RE54374
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 543 |
Well: | 74 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5059-RC |
Protein status: | RE54374.pep: gold |
Preliminary Size: | 939 |
Sequenced Size: | 1921 |
Gene | Date | Evidence |
---|---|---|
CG5059 | 2004-04-27 | Blastp of sequenced clone |
CG5059 | 2008-04-29 | Release 5.5 accounting |
CG5059 | 2008-08-15 | Release 5.9 accounting |
CG5059 | 2008-12-18 | 5.12 accounting |
1921 bp (1921 high quality bases) assembled on 2004-04-27
GenBank Submission: BT014646
> RE54374.complete TGGCTTTTAGTATTCAATTGTCAGCATGATTGGTGTGCCACGTGAGTGAT CTGAATTATTCTGTAACTGATTCCATCGCGAAAGTGTCTAAATTAGATGA TTGTACAGTGATAACTCGAGAGAAAGCAATACCAGGAAGATTTTAAATTT ATAATGTGACATTACAAAATTATAGAAAAAATTAATTTTAATTAATTAGA AAGTGAATAATAGATGATATAAGAGGCGTTGGGTGTGATCGTATGTGTGA TTATATATATGCGTATACATGTAATCAGTTGGTTGTATTATTAGGTAGTT TTTAGGAACGCTACACTGTACTCCTTATCAAGTAACTTGCACGCTTCTCG TGCCCATATTGCATCGCCAGTTTGTCTTTTTTCTCGATTTGTTTTGAAAA TGAAATTTTCTCCGTAGAGCATTGATAAGCATCGGCTTGTATAGACTATA AACAAAACATGTGTGCTGCTTTATATACACAGTATGCCGAAAAGAAACGG AAATTATGCGAGTGGTGGGGTTTTTAGCGTTATCAATGGGGCACGAGCAC TCGAACAGATATATACAAGCACATACATTGCAGATCCGGCTAACGAATCG AACAATCTTGGATCGAACTCAGCACAACAGCTGCGATGGCTGGCATCAAG AGCCCCGACAGAATCACTCCGTTGCCATTCAACAATGGCGAGGAGTACCT GAGACTTCTGCGCGAGGCCCAGCGCGAGTCGAACCAGTCGAGCCGTGTCG TCTCCTTGGCCAGCTCCCGTCGTGATACGCCCCGTGATAGCCCCAAGAGT CCACCGAACAGTCCCCAGTCGGAGCTCTGTCCGGATGATGAGCTCAGAAA CGTGTACATCAACTACTGGACCAAGGGAGGAGACAAACAGAATGCAGGCA ATGAAGATTGGCTGAAGAACTGGAATCAGCCACCCAGTAGCTGGAACATT GAGGATTCAAGTCGGGATGCCGGCGACGAGGGCGAGAAAAAGAAGACTAA CACAGGCTACTCCATCCGTTTGAAGCGACTGGGCTCCAACTCGTTGTTCT CCCGCGAAATTCTGTACTCGCTGCTGGTGACCAACGTCCTGTCCCTGCTG CTGGGAGCTGGATTCGGGCTATGGTTGAGCAAGCGTGGCATACTCCTTAC CCGTGTGGTCATTGACTGAAAGATGCCATAAACAAAAAGGAGAAAGAGGA AATATATATAATCGTTTTCAATCTATCAATATGCACATCAATCGAAAACA GAACACGATGCGTTCCATATAAGAAAACGAAGTATACACATCTATACAGC CAACCGTATTCCAACTCATTTGTATTTTTATCGGAAGTCTATATTTTCGA CACCTTCTCATTCAGTACATACCTATAAAAATGTAATTTCTAATTACTAA GCCAGCAAACTAAAACAGGCCTTTGGGCAATGGTTGAAACTAAGCGTTTT CATATTTTATATAATTTTATATATTTAACATTATATCAAGGCAGCAAATC TAATGATACAGAAAAGCATTTATAGATGCTCCATATATTTTGCTTTAGCC GTATGTCTTAGCACCCAACCGTGCATTATATCCAATACAAATGTACGCCG AACTTCGTGTTAAGAATTTCAATTTCATCATCATACATCATATAGAACAA CCATAAACATTTGTAGACATATTATAGTTGAATCGTATTGTATCCTGATT GTACTTTTTGTTGAACAATCGTCAAATGTTTCGATACAATAAGCATATAA GAAAAACGATACAAAAGGAGAAAAAAAAACAATATGGCACACATAAGATT ATATCTTTAATGTGAGGGAAGGGTTATCCCCCACACAAAAAAAACAGAAT AGTTGTAATGATTTTTTATATTAAAATATTTTTCAATATCTATTTAAAAG AGCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5059-RC | 2005 | CG5059-RC | 28..1926 | 6..1904 | 9495 | 100 | Plus |
CG5059.c | 1800 | CG5059.c | 419..1721 | 602..1904 | 6515 | 100 | Plus |
CG5059-RB | 1450 | CG5059-RB | 69..1371 | 602..1904 | 6515 | 100 | Plus |
CG5059.c | 1800 | CG5059.c | 385..420 | 6..41 | 180 | 100 | Plus |
CG5059-RB | 1450 | CG5059-RB | 35..70 | 6..41 | 180 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20503588..20504374 | 1903..1117 | 3920 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 20505689..20506286 | 603..6 | 2960 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 20504843..20505122 | 883..604 | 1370 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 20504433..20504616 | 1118..935 | 920 | 100 | Minus |
chr3L | 24539361 | chr3L | 20504715..20504778 | 937..874 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20514597..20515384 | 1904..1117 | 3940 | 100 | Minus |
3L | 28110227 | 3L | 20516699..20517296 | 603..6 | 2990 | 100 | Minus |
3L | 28110227 | 3L | 20515853..20516132 | 883..604 | 1370 | 99.3 | Minus |
3L | 28110227 | 3L | 20515443..20515626 | 1118..935 | 920 | 100 | Minus |
3L | 28110227 | 3L | 20515725..20515788 | 937..874 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20507697..20508484 | 1904..1117 | 3940 | 100 | Minus |
3L | 28103327 | 3L | 20509799..20510396 | 603..6 | 2990 | 100 | Minus |
3L | 28103327 | 3L | 20508953..20509232 | 883..604 | 1370 | 99.2 | Minus |
3L | 28103327 | 3L | 20508543..20508726 | 1118..935 | 920 | 100 | Minus |
3L | 28103327 | 3L | 20508825..20508888 | 937..874 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
rooA | 7621 | rooA ROOA_LTR 7621bp | 1913..1957 | 1231..1274 | 114 | 75.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20503588..20504373 | 1118..1903 | 99 | <- | Minus |
chr3L | 20504434..20504613 | 938..1117 | 100 | <- | Minus |
chr3L | 20504715..20504776 | 876..937 | 100 | <- | Minus |
chr3L | 20504851..20505122 | 604..875 | 100 | <- | Minus |
chr3L | 20505689..20506290 | 1..603 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 15..582 | 602..1169 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 15..582 | 602..1169 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 15..582 | 602..1169 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 15..582 | 602..1169 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RB | 15..582 | 602..1169 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RC | 2..1902 | 3..1903 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RC | 2..1902 | 3..1903 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RC | 5..1905 | 1..1902 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RC | 2..1902 | 3..1903 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5059-RC | 5..1905 | 1..1902 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20515444..20515623 | 938..1117 | 100 | <- | Minus |
3L | 20515725..20515786 | 876..937 | 100 | <- | Minus |
3L | 20515861..20516132 | 604..875 | 100 | <- | Minus |
3L | 20514598..20515383 | 1118..1903 | 100 | <- | Minus |
3L | 20516699..20517300 | 1..603 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20515444..20515623 | 938..1117 | 100 | <- | Minus |
3L | 20515725..20515786 | 876..937 | 100 | <- | Minus |
3L | 20515861..20516132 | 604..875 | 100 | <- | Minus |
3L | 20514598..20515383 | 1118..1903 | 100 | <- | Minus |
3L | 20516699..20517300 | 1..603 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20515444..20515623 | 938..1117 | 100 | <- | Minus |
3L | 20515725..20515786 | 876..937 | 100 | <- | Minus |
3L | 20515861..20516132 | 604..875 | 100 | <- | Minus |
3L | 20514598..20515383 | 1118..1903 | 100 | <- | Minus |
3L | 20516699..20517300 | 1..603 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20507698..20508483 | 1118..1903 | 100 | <- | Minus |
arm_3L | 20508544..20508723 | 938..1117 | 100 | <- | Minus |
arm_3L | 20508825..20508886 | 876..937 | 100 | <- | Minus |
arm_3L | 20508961..20509232 | 604..875 | 100 | <- | Minus |
arm_3L | 20509799..20510400 | 1..603 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20508961..20509232 | 604..875 | 100 | <- | Minus |
3L | 20507698..20508483 | 1118..1903 | 100 | <- | Minus |
3L | 20508544..20508723 | 938..1117 | 100 | <- | Minus |
3L | 20508825..20508886 | 876..937 | 100 | <- | Minus |
3L | 20509799..20510400 | 1..603 | 99 | Minus |
Translation from 635 to 1168
> RE54374.pep MAGIKSPDRITPLPFNNGEEYLRLLREAQRESNQSSRVVSLASSRRDTPR DSPKSPPNSPQSELCPDDELRNVYINYWTKGGDKQNAGNEDWLKNWNQPP SSWNIEDSSRDAGDEGEKKKTNTGYSIRLKRLGSNSLFSREILYSLLVTN VLSLLLGAGFGLWLSKRGILLTRVVID*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24126-PA | 208 | GF24126-PA | 25..208 | 1..177 | 835 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13304-PA | 206 | GG13304-PA | 25..206 | 1..177 | 836 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17012-PA | 203 | GH17012-PA | 25..203 | 1..177 | 765 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5059-PE | 177 | CG5059-PE | 1..177 | 1..177 | 927 | 100 | Plus |
CG5059-PD | 177 | CG5059-PD | 1..177 | 1..177 | 927 | 100 | Plus |
CG5059-PC | 177 | CG5059-PC | 1..177 | 1..177 | 927 | 100 | Plus |
CG5059-PB | 193 | CG5059-PB | 17..193 | 1..177 | 927 | 100 | Plus |
CG5059-PA | 201 | CG5059-PA | 25..201 | 1..177 | 927 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11906-PA | 203 | GI11906-PA | 25..203 | 1..177 | 744 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12771-PA | 205 | GL12771-PA | 25..205 | 1..177 | 778 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18627-PA | 205 | GA18627-PA | 25..205 | 1..177 | 732 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22205-PA | 206 | GM22205-PA | 25..206 | 1..177 | 860 | 93.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12180-PA | 206 | GD12180-PA | 25..206 | 1..177 | 860 | 93.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13780-PA | 202 | GJ13780-PA | 25..202 | 1..177 | 769 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12337-PA | 209 | GK12337-PA | 25..209 | 1..177 | 754 | 82.2 | Plus |
Translation from 635 to 1168
> RE54374.hyp MAGIKSPDRITPLPFNNGEEYLRLLREAQRESNQSSRVVSLASSRRDTPR DSPKSPPNSPQSELCPDDELRNVYINYWTKGGDKQNAGNEDWLKNWNQPP SSWNIEDSSRDAGDEGEKKKTNTGYSIRLKRLGSNSLFSREILYSLLVTN VLSLLLGAGFGLWLSKRGILLTRVVID*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5059-PE | 177 | CG5059-PE | 1..177 | 1..177 | 927 | 100 | Plus |
CG5059-PD | 177 | CG5059-PD | 1..177 | 1..177 | 927 | 100 | Plus |
CG5059-PC | 177 | CG5059-PC | 1..177 | 1..177 | 927 | 100 | Plus |
CG5059-PB | 193 | CG5059-PB | 17..193 | 1..177 | 927 | 100 | Plus |
CG5059-PA | 201 | CG5059-PA | 25..201 | 1..177 | 927 | 100 | Plus |