Clone RE54374 Report

Search the DGRC for RE54374

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:543
Well:74
Vector:pFlc-1
Associated Gene/TranscriptCG5059-RC
Protein status:RE54374.pep: gold
Preliminary Size:939
Sequenced Size:1921

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5059 2004-04-27 Blastp of sequenced clone
CG5059 2008-04-29 Release 5.5 accounting
CG5059 2008-08-15 Release 5.9 accounting
CG5059 2008-12-18 5.12 accounting

Clone Sequence Records

RE54374.complete Sequence

1921 bp (1921 high quality bases) assembled on 2004-04-27

GenBank Submission: BT014646

> RE54374.complete
TGGCTTTTAGTATTCAATTGTCAGCATGATTGGTGTGCCACGTGAGTGAT
CTGAATTATTCTGTAACTGATTCCATCGCGAAAGTGTCTAAATTAGATGA
TTGTACAGTGATAACTCGAGAGAAAGCAATACCAGGAAGATTTTAAATTT
ATAATGTGACATTACAAAATTATAGAAAAAATTAATTTTAATTAATTAGA
AAGTGAATAATAGATGATATAAGAGGCGTTGGGTGTGATCGTATGTGTGA
TTATATATATGCGTATACATGTAATCAGTTGGTTGTATTATTAGGTAGTT
TTTAGGAACGCTACACTGTACTCCTTATCAAGTAACTTGCACGCTTCTCG
TGCCCATATTGCATCGCCAGTTTGTCTTTTTTCTCGATTTGTTTTGAAAA
TGAAATTTTCTCCGTAGAGCATTGATAAGCATCGGCTTGTATAGACTATA
AACAAAACATGTGTGCTGCTTTATATACACAGTATGCCGAAAAGAAACGG
AAATTATGCGAGTGGTGGGGTTTTTAGCGTTATCAATGGGGCACGAGCAC
TCGAACAGATATATACAAGCACATACATTGCAGATCCGGCTAACGAATCG
AACAATCTTGGATCGAACTCAGCACAACAGCTGCGATGGCTGGCATCAAG
AGCCCCGACAGAATCACTCCGTTGCCATTCAACAATGGCGAGGAGTACCT
GAGACTTCTGCGCGAGGCCCAGCGCGAGTCGAACCAGTCGAGCCGTGTCG
TCTCCTTGGCCAGCTCCCGTCGTGATACGCCCCGTGATAGCCCCAAGAGT
CCACCGAACAGTCCCCAGTCGGAGCTCTGTCCGGATGATGAGCTCAGAAA
CGTGTACATCAACTACTGGACCAAGGGAGGAGACAAACAGAATGCAGGCA
ATGAAGATTGGCTGAAGAACTGGAATCAGCCACCCAGTAGCTGGAACATT
GAGGATTCAAGTCGGGATGCCGGCGACGAGGGCGAGAAAAAGAAGACTAA
CACAGGCTACTCCATCCGTTTGAAGCGACTGGGCTCCAACTCGTTGTTCT
CCCGCGAAATTCTGTACTCGCTGCTGGTGACCAACGTCCTGTCCCTGCTG
CTGGGAGCTGGATTCGGGCTATGGTTGAGCAAGCGTGGCATACTCCTTAC
CCGTGTGGTCATTGACTGAAAGATGCCATAAACAAAAAGGAGAAAGAGGA
AATATATATAATCGTTTTCAATCTATCAATATGCACATCAATCGAAAACA
GAACACGATGCGTTCCATATAAGAAAACGAAGTATACACATCTATACAGC
CAACCGTATTCCAACTCATTTGTATTTTTATCGGAAGTCTATATTTTCGA
CACCTTCTCATTCAGTACATACCTATAAAAATGTAATTTCTAATTACTAA
GCCAGCAAACTAAAACAGGCCTTTGGGCAATGGTTGAAACTAAGCGTTTT
CATATTTTATATAATTTTATATATTTAACATTATATCAAGGCAGCAAATC
TAATGATACAGAAAAGCATTTATAGATGCTCCATATATTTTGCTTTAGCC
GTATGTCTTAGCACCCAACCGTGCATTATATCCAATACAAATGTACGCCG
AACTTCGTGTTAAGAATTTCAATTTCATCATCATACATCATATAGAACAA
CCATAAACATTTGTAGACATATTATAGTTGAATCGTATTGTATCCTGATT
GTACTTTTTGTTGAACAATCGTCAAATGTTTCGATACAATAAGCATATAA
GAAAAACGATACAAAAGGAGAAAAAAAAACAATATGGCACACATAAGATT
ATATCTTTAATGTGAGGGAAGGGTTATCCCCCACACAAAAAAAACAGAAT
AGTTGTAATGATTTTTTATATTAAAATATTTTTCAATATCTATTTAAAAG
AGCAAAAAAAAAAAAAAAAAA

RE54374.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5059-RC 2005 CG5059-RC 28..1926 6..1904 9495 100 Plus
CG5059.c 1800 CG5059.c 419..1721 602..1904 6515 100 Plus
CG5059-RB 1450 CG5059-RB 69..1371 602..1904 6515 100 Plus
CG5059.c 1800 CG5059.c 385..420 6..41 180 100 Plus
CG5059-RB 1450 CG5059-RB 35..70 6..41 180 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20503588..20504374 1903..1117 3920 99.9 Minus
chr3L 24539361 chr3L 20505689..20506286 603..6 2960 99.7 Minus
chr3L 24539361 chr3L 20504843..20505122 883..604 1370 99.3 Minus
chr3L 24539361 chr3L 20504433..20504616 1118..935 920 100 Minus
chr3L 24539361 chr3L 20504715..20504778 937..874 320 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20514597..20515384 1904..1117 3940 100 Minus
3L 28110227 3L 20516699..20517296 603..6 2990 100 Minus
3L 28110227 3L 20515853..20516132 883..604 1370 99.3 Minus
3L 28110227 3L 20515443..20515626 1118..935 920 100 Minus
3L 28110227 3L 20515725..20515788 937..874 320 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20507697..20508484 1904..1117 3940 100 Minus
3L 28103327 3L 20509799..20510396 603..6 2990 100 Minus
3L 28103327 3L 20508953..20509232 883..604 1370 99.2 Minus
3L 28103327 3L 20508543..20508726 1118..935 920 100 Minus
3L 28103327 3L 20508825..20508888 937..874 320 100 Minus
Blast to na_te.dros performed 2019-03-16 02:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
rooA 7621 rooA ROOA_LTR 7621bp 1913..1957 1231..1274 114 75.6 Plus

RE54374.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:21:35 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20503588..20504373 1118..1903 99 <- Minus
chr3L 20504434..20504613 938..1117 100 <- Minus
chr3L 20504715..20504776 876..937 100 <- Minus
chr3L 20504851..20505122 604..875 100 <- Minus
chr3L 20505689..20506290 1..603 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:17 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RB 15..582 602..1169 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:36:58 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RB 15..582 602..1169 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:52 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RB 15..582 602..1169 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:20:46 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RB 15..582 602..1169 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:06:08 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RB 15..582 602..1169 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:44:24 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RC 2..1902 3..1903 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:36:57 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RC 2..1902 3..1903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:52 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RC 5..1905 1..1902 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:20:46 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RC 2..1902 3..1903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:06:08 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
CG5059-RC 5..1905 1..1902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:21:35 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20515444..20515623 938..1117 100 <- Minus
3L 20515725..20515786 876..937 100 <- Minus
3L 20515861..20516132 604..875 100 <- Minus
3L 20514598..20515383 1118..1903 100 <- Minus
3L 20516699..20517300 1..603 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:21:35 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20515444..20515623 938..1117 100 <- Minus
3L 20515725..20515786 876..937 100 <- Minus
3L 20515861..20516132 604..875 100 <- Minus
3L 20514598..20515383 1118..1903 100 <- Minus
3L 20516699..20517300 1..603 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:21:35 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20515444..20515623 938..1117 100 <- Minus
3L 20515725..20515786 876..937 100 <- Minus
3L 20515861..20516132 604..875 100 <- Minus
3L 20514598..20515383 1118..1903 100 <- Minus
3L 20516699..20517300 1..603 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:52 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20507698..20508483 1118..1903 100 <- Minus
arm_3L 20508544..20508723 938..1117 100 <- Minus
arm_3L 20508825..20508886 876..937 100 <- Minus
arm_3L 20508961..20509232 604..875 100 <- Minus
arm_3L 20509799..20510400 1..603 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:07 Download gff for RE54374.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20508961..20509232 604..875 100 <- Minus
3L 20507698..20508483 1118..1903 100 <- Minus
3L 20508544..20508723 938..1117 100 <- Minus
3L 20508825..20508886 876..937 100 <- Minus
3L 20509799..20510400 1..603 99   Minus

RE54374.pep Sequence

Translation from 635 to 1168

> RE54374.pep
MAGIKSPDRITPLPFNNGEEYLRLLREAQRESNQSSRVVSLASSRRDTPR
DSPKSPPNSPQSELCPDDELRNVYINYWTKGGDKQNAGNEDWLKNWNQPP
SSWNIEDSSRDAGDEGEKKKTNTGYSIRLKRLGSNSLFSREILYSLLVTN
VLSLLLGAGFGLWLSKRGILLTRVVID*

RE54374.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24126-PA 208 GF24126-PA 25..208 1..177 835 89.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13304-PA 206 GG13304-PA 25..206 1..177 836 91.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17012-PA 203 GH17012-PA 25..203 1..177 765 84.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5059-PE 177 CG5059-PE 1..177 1..177 927 100 Plus
CG5059-PD 177 CG5059-PD 1..177 1..177 927 100 Plus
CG5059-PC 177 CG5059-PC 1..177 1..177 927 100 Plus
CG5059-PB 193 CG5059-PB 17..193 1..177 927 100 Plus
CG5059-PA 201 CG5059-PA 25..201 1..177 927 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11906-PA 203 GI11906-PA 25..203 1..177 744 83.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12771-PA 205 GL12771-PA 25..205 1..177 778 84.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18627-PA 205 GA18627-PA 25..205 1..177 732 84.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22205-PA 206 GM22205-PA 25..206 1..177 860 93.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12180-PA 206 GD12180-PA 25..206 1..177 860 93.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13780-PA 202 GJ13780-PA 25..202 1..177 769 84.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12337-PA 209 GK12337-PA 25..209 1..177 754 82.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22394-PA 206 GE22394-PA 25..206 1..177 843 91.8 Plus
Dyak\GE22740-PA 206 GE22740-PA 25..206 1..177 843 91.8 Plus

RE54374.hyp Sequence

Translation from 635 to 1168

> RE54374.hyp
MAGIKSPDRITPLPFNNGEEYLRLLREAQRESNQSSRVVSLASSRRDTPR
DSPKSPPNSPQSELCPDDELRNVYINYWTKGGDKQNAGNEDWLKNWNQPP
SSWNIEDSSRDAGDEGEKKKTNTGYSIRLKRLGSNSLFSREILYSLLVTN
VLSLLLGAGFGLWLSKRGILLTRVVID*

RE54374.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5059-PE 177 CG5059-PE 1..177 1..177 927 100 Plus
CG5059-PD 177 CG5059-PD 1..177 1..177 927 100 Plus
CG5059-PC 177 CG5059-PC 1..177 1..177 927 100 Plus
CG5059-PB 193 CG5059-PB 17..193 1..177 927 100 Plus
CG5059-PA 201 CG5059-PA 25..201 1..177 927 100 Plus