BDGP Sequence Production Resources |
Search the DGRC for RE54483
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 544 |
Well: | 83 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpS15Aa-RA |
Protein status: | RE54483.pep: gold |
Preliminary Size: | 766 |
Sequenced Size: | 702 |
Gene | Date | Evidence |
---|---|---|
CG2033 | 2001-12-14 | Blastp of sequenced clone |
CG2033 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2033 | 2003-01-01 | Sim4 clustering to Release 3 |
RpS15Aa | 2008-04-29 | Release 5.5 accounting |
RpS15Aa | 2008-08-15 | Release 5.9 accounting |
RpS15Aa | 2008-12-18 | 5.12 accounting |
702 bp (702 high quality bases) assembled on 2001-12-14
GenBank Submission: AY084182
> RE54483.complete CTTTTTCCTTCCGTTTCCCTTTCTTTTCCCTTTTTCACGTTTGCCGGTCG TGTAAAACAGTTTTTGCAAACAAATCCAGCCATGGTGCGTATGAACGTAT TGGCCGATGCCTTGAAGTGCATAAACAACGCCGAGAAGCGTGGCAAGCGG CAGGTGCTGCTGCGTCCCTGCTCCAAGGTGATCATCAAGTTCCTGACCGT GATGATGAAGCATGGCTATATCGGCGAATTCGAGATCGTCGACGATCATC GTTCCGGCAAGATCGTTGTCAACCTGACCGGTAGGCTAAACAAGTGCGGC GTCATCTCGCCCCGCTTCGATGTGCCCATCAACGACATCGAGAAATGGAC CAACAATCTGTTGCCCTCGCGTCAGTTTGGTTACGTTGTGCTCACCACCT CTGGCGGCATCATGGACCACGAGGAGGCTAGGAGAAAACATTTGGGAGGC AAAATTCTCGGCTTCTTCTTCTAGAGAAACCAAGTTCGCATCGTAGAGAG TCTGTATGTGCTGCTAAGGAGTTTGATATGTAGATTGACGTTTTATTTCA CCGACCATGCAACCAACTATGTACTTTGTGCACAGGAAACAAGGGGCGAA AACGCTGCTACGTTCATTCAGAAAACAAACGACGATGAATGTTCACAAAG TTACGCGAAATAAAATGATTGATACATAATAATTTTAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS15Aa-RC | 1007 | RpS15Aa-RC | 54..741 | 1..688 | 3440 | 100 | Plus |
RpS15Aa-RD | 1078 | RpS15Aa-RD | 169..812 | 45..688 | 3220 | 100 | Plus |
RpS15Aa-RE | 1078 | RpS15Aa-RE | 169..812 | 45..688 | 3220 | 100 | Plus |
RpS15Aa-RD | 1078 | RpS15Aa-RD | 54..97 | 1..44 | 220 | 100 | Plus |
RpS15Aa-RE | 1078 | RpS15Aa-RE | 54..97 | 1..44 | 220 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 13226605..13227214 | 686..77 | 3050 | 100 | Minus |
chr2R | 21145070 | chr2R | 6709288..6709921 | 24..668 | 2635 | 94.5 | Plus |
chr2L | 23010047 | chr2L | 14745499..14745767 | 686..417 | 1060 | 93.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 13335771..13336382 | 688..77 | 3060 | 100 | Minus |
2R | 25286936 | 2R | 10821751..10822384 | 24..668 | 2650 | 94.6 | Plus |
2L | 23513712 | 2L | 14746805..14747075 | 688..417 | 1070 | 93.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 13343869..13344480 | 688..77 | 3060 | 100 | Minus |
2R | 25260384 | 2R | 10822950..10823428 | 24..498 | 2145 | 96.8 | Plus |
2L | 23513712 | 2L | 14746805..14747075 | 688..417 | 1080 | 93.7 | Minus |
2R | 25260384 | 2R | 10823433..10823583 | 518..668 | 710 | 98 | Plus |
X | 23527363 | X | 13345603..13345637 | 79..45 | 175 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 3127..3169 | 40..82 | 107 | 72.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 13226605..13227211 | 80..686 | 100 | <- | Minus |
chrX | 13228337..13228371 | 45..79 | 100 | <- | Minus |
chrX | 13228443..13228486 | 1..44 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15Aa-RD | 1..393 | 82..474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15Aa-RD | 1..393 | 82..474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15Aa-RD | 1..393 | 82..474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15Aa-RD | 1..393 | 82..474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15Aa-RD | 1..393 | 82..474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15Aa-RC | 1..686 | 1..686 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15Aa-RC | 1..686 | 1..686 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15Aa-RC | 1..686 | 1..686 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15Aa-RC | 1..686 | 1..686 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15Aa-RC | 52..737 | 1..686 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13335773..13336379 | 80..686 | 100 | <- | Minus |
X | 13337505..13337539 | 45..79 | 100 | <- | Minus |
X | 13337611..13337654 | 1..44 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13335773..13336379 | 80..686 | 100 | <- | Minus |
X | 13337505..13337539 | 45..79 | 100 | <- | Minus |
X | 13337611..13337654 | 1..44 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13335773..13336379 | 80..686 | 100 | <- | Minus |
X | 13337505..13337539 | 45..79 | 100 | <- | Minus |
X | 13337611..13337654 | 1..44 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 13229806..13230412 | 80..686 | 100 | <- | Minus |
arm_X | 13231538..13231572 | 45..79 | 100 | <- | Minus |
arm_X | 13231644..13231687 | 1..44 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13343871..13344477 | 80..686 | 100 | <- | Minus |
X | 13345603..13345637 | 45..79 | 100 | <- | Minus |
X | 13345709..13345752 | 1..44 | 100 | Minus |
Translation from 0 to 473
> RE54483.hyp LFPSVSLSFPFFTFAGRVKQFLQTNPAMVRMNVLADALKCINNAEKRGKR QVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCG VISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGG KILGFFF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS15Aa-PF | 130 | CG2033-PF | 1..130 | 28..157 | 681 | 100 | Plus |
RpS15Aa-PE | 130 | CG2033-PE | 1..130 | 28..157 | 681 | 100 | Plus |
RpS15Aa-PD | 130 | CG2033-PD | 1..130 | 28..157 | 681 | 100 | Plus |
RpS15Aa-PA | 130 | CG2033-PA | 1..130 | 28..157 | 681 | 100 | Plus |
RpS15Aa-PC | 130 | CG2033-PC | 1..130 | 28..157 | 681 | 100 | Plus |
Translation from 81 to 473
> RE54483.pep MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEF EIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFG YVVLTTSGGIMDHEEARRKHLGGKILGFFF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19502-PA | 130 | GF19502-PA | 1..130 | 1..130 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19508-PA | 130 | GG19508-PA | 1..130 | 1..130 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17815-PA | 130 | GH17815-PA | 1..130 | 1..130 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS15Aa-PF | 130 | CG2033-PF | 1..130 | 1..130 | 681 | 100 | Plus |
RpS15Aa-PE | 130 | CG2033-PE | 1..130 | 1..130 | 681 | 100 | Plus |
RpS15Aa-PD | 130 | CG2033-PD | 1..130 | 1..130 | 681 | 100 | Plus |
RpS15Aa-PA | 130 | CG2033-PA | 1..130 | 1..130 | 681 | 100 | Plus |
RpS15Aa-PC | 130 | CG2033-PC | 1..130 | 1..130 | 681 | 100 | Plus |
RpS15Ab-PA | 130 | CG12324-PA | 1..130 | 1..130 | 670 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16425-PA | 130 | GI16425-PA | 1..130 | 1..130 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26726-PA | 130 | GL26726-PA | 1..130 | 1..130 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15195-PA | 130 | GA15195-PA | 1..130 | 1..130 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11496-PA | 130 | GM11496-PA | 1..130 | 1..130 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15889-PA | 130 | GD15889-PA | 1..130 | 1..130 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15828-PA | 130 | GJ15828-PA | 1..130 | 1..130 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16027-PA | 130 | GK16027-PA | 1..130 | 1..130 | 685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\RpS15Aa-PA | 130 | GE16163-PA | 1..130 | 1..130 | 685 | 100 | Plus |