BDGP Sequence Production Resources |
Search the DGRC for RE54525
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 545 |
Well: | 25 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Rcd2-RA |
Protein status: | RE54525.pep: gold |
Preliminary Size: | 1305 |
Sequenced Size: | 2251 |
Gene | Date | Evidence |
---|---|---|
CG4786 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4786 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4786 | 2003-01-22 | Blastp of sequenced clone |
CG4786 | 2008-04-29 | Release 5.5 accounting |
CG4786 | 2008-08-15 | Release 5.9 accounting |
CG4786 | 2008-12-18 | 5.12 accounting |
2251 bp (2251 high quality bases) assembled on 2003-01-22
GenBank Submission: AY075507
> RE54525.complete AGTCTGCTGGAAACCTCCACTGTAATCGGTTGTGTGCTGTGCTCTAGTGA AAAATCCCGAAACCTCACATATTTATCACCTTAAAAGCGGCGTCTCAAAC AAAACACAAATACGCAGCACTGCGAAAAAGACCAGCATCGGGGCTAAATC AAAAATAAAAACAACTAAGAAACAACTAAAAAACAAGAGACCAAATGGAC AGACAGGCGGTCAATTGAAAACAAATAGTACAATGAAGTTTTATTTTTGG ATCAGTTAGACTCTCGACAAGTAAAGTAAAGATATTTAGTGCAGCGCAAC TAAAAAAAGAGCAGAAACACGTATTTACAATTATCACAGTTAATCAAAGA TATATATACGCGTTTATATATATATTTAATCAGCCTTTGGACTTTGAACG TAAGAAATGGAAAAGTTAATCACAATTTGCCTCCTCCTGAGGATTCTACA ATCGTGTGCTATGCCCATTATTGACCCAGATAGTATAGACGAATCCCTTG CGTGTCCACCGTGTGAGAATGACTTTCCCATCTGTTACAAAGTGATCGTG GAGGTGGAACGGGGCAATGGACTGCCCGGTAGCTGTTGTCCTCGCTACGA GTGCCTCGATGAGGAACCTGTCTGCGATGGTTCCAAAAGGAGATTCTATA AGAACAAGTGCACTGTGTGCGATCCTTGCGAACCGCTGGCCATTCAGTGC AAGGAAATATGTCCAATGGAAGAACCCGAACCCATTTGCCTGTCTGACAA CAATGAGTACCACAGAAATGGCGATATTTGGATGGAAAACAATGGTTGTA CTACATGCATGTGCGAAGGTGGATATGTCACCCGCAATGCTGTTCAGTGC AATCATTATTATCGGTGCAACAATCCCGTTGAGGTCAAGGGACAGTGCTG TCCGGTTTGTCCGGACGAGCTGGGTGTGAGTAACAGTATCTATGACGATG GTAATCACAAGTATAGAAACACCACTTCAGCACCAATTTTGGGCGAAAGC GAATCCTCCAGTTCAGGGTGGAGCTCCACTGTGCCAACAGATACTTCTGA TTCCGTTCCAGACACCAGCGGTTCACCCAATAGCTCATCTACATCATCTG AACTGGCCACACCGACTCCGAACACAAGTGAATTATCCAGTTCCACAGAG AGGACAAGTACGGATTCGAGTTATGAACAACTTGGAGAATTTGCCACTTC CGAGTCGCCGGATCTCAGAACCGACTCAGAAGAACAAGAAACCTCAAGTT CTGATTCTGCAATGGAGACTACCACAAATCCAACCACATTCGAAGCAACA GCAACTTCCACAGTTTCAAGCACTTCAATGGAACTTCCCACTGCAACAGA TGATGGTATCACCAAAATGGATTTTAATCCTGATGGCAGAACACCGAAAG CAACTGATGAGCCCACCGTGATCTTAGTCAATGCAACTAACTTCTTATCC GTGGTGACCGATAATCCCATCACGAATCAACCGGCGGTCGTGGCGCCCGA ATCGACCAGTCAGATTAAGGATCTCAACAGTATGGAGATCCAGCAAATAA GGTATCCCTACGCAGAGGTGCCCCAGGAGCGCATCCAAACCGATTGGCCT TTGGAATGCGTGGTTATAATGGGCTTTGTTATACTTATAGTGTTTATATC CCTTTATGCCATCGTGAAGAGATATTCGAAAAACAAAAAATACCATGCCA TACCATTAAATCCAGTTCGAAAGCTGAATGAAACGGAGAAAGCGAAGACG GAGCAAAAGTTGTGATTCCTGCACAGAGAGAAAATTATAGTTCCAGGTTG CCATCTCAGTTTATCAGTTCGTTTTTTCTCTGTGTGAATTCCATCCTCCT GCAGACTGATTTTTGATCTTAAAAATTATACCAAAACAGTGGATGAAGTC TGCATGATAGTACTACTTAGGAAAAGAAACTATACTTTGTCGTCAGTCCA GAGATAAGCATACAATTTGATCTTTAAACTATGCTCAAATCAATAAATAA AGCGATTAGGTTTAGCAGTAGGAGTTAAGCAGTTAAGGAATACGTTATTA ATTATAATTGGAAAGTATTAGTTTGATTGTAAATTATAATTACTGCACAC GCAGAATTGTTGCATTAGAGTGATTACATATCAAACGCTCGCACTCATAT AATTTTAAATTATTATACCCAAAACTCATCAACTACATTCATTCCAAAGC ATACAAAAATAAAGAAAAAGAAACCAAAGCTAAACAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcd2-RA | 2332 | Rcd2-RA | 63..2301 | 1..2239 | 11180 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20516969..20518746 | 2235..458 | 8890 | 100 | Minus |
chr3L | 24539361 | chr3L | 20529122..20529402 | 281..1 | 1390 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 20527886..20528064 | 458..280 | 895 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20527975..20529756 | 2239..458 | 8910 | 100 | Minus |
3L | 28110227 | 3L | 20540134..20540414 | 281..1 | 1390 | 99.6 | Minus |
3L | 28110227 | 3L | 20538898..20539076 | 458..280 | 895 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20521075..20522856 | 2239..458 | 8910 | 100 | Minus |
3L | 28103327 | 3L | 20533234..20533514 | 281..1 | 1390 | 99.6 | Minus |
3L | 28103327 | 3L | 20531998..20532176 | 458..280 | 895 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20516969..20518745 | 459..2235 | 100 | <- | Minus |
chr3L | 20527886..20528062 | 282..458 | 100 | <- | Minus |
chr3L | 20529122..20529402 | 1..281 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4786-RA | 1..1359 | 407..1765 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd2-RA | 1..1359 | 407..1765 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd2-RA | 1..1359 | 407..1765 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4786-RA | 1..1359 | 407..1765 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd2-RA | 1..1359 | 407..1765 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4786-RA | 1..2235 | 1..2235 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd2-RA | 1..2235 | 1..2235 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd2-RA | 4..2238 | 1..2235 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4786-RA | 1..2235 | 1..2235 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rcd2-RA | 4..2238 | 1..2235 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20540134..20540414 | 1..281 | 99 | Minus | |
3L | 20527979..20529755 | 459..2235 | 100 | <- | Minus |
3L | 20538898..20539074 | 282..458 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20540134..20540414 | 1..281 | 99 | Minus | |
3L | 20527979..20529755 | 459..2235 | 100 | <- | Minus |
3L | 20538898..20539074 | 282..458 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20540134..20540414 | 1..281 | 99 | Minus | |
3L | 20527979..20529755 | 459..2235 | 100 | <- | Minus |
3L | 20538898..20539074 | 282..458 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20533234..20533514 | 1..281 | 99 | Minus | |
arm_3L | 20521079..20522855 | 459..2235 | 100 | <- | Minus |
arm_3L | 20531998..20532174 | 282..458 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20531998..20532174 | 282..458 | 100 | <- | Minus |
3L | 20521079..20522855 | 459..2235 | 100 | <- | Minus |
3L | 20533234..20533514 | 1..281 | 99 | Minus |
Translation from 406 to 1764
> RE54525.hyp MEKLITICLLLRILQSCAMPIIDPDSIDESLACPPCENDFPICYKVIVEV ERGNGLPGSCCPRYECLDEEPVCDGSKRRFYKNKCTVCDPCEPLAIQCKE ICPMEEPEPICLSDNNEYHRNGDIWMENNGCTTCMCEGGYVTRNAVQCNH YYRCNNPVEVKGQCCPVCPDELGVSNSIYDDGNHKYRNTTSAPILGESES SSSGWSSTVPTDTSDSVPDTSGSPNSSSTSSELATPTPNTSELSSSTERT STDSSYEQLGEFATSESPDLRTDSEEQETSSSDSAMETTTNPTTFEATAT STVSSTSMELPTATDDGITKMDFNPDGRTPKATDEPTVILVNATNFLSVV TDNPITNQPAVVAPESTSQIKDLNSMEIQQIRYPYAEVPQERIQTDWPLE CVVIMGFVILIVFISLYAIVKRYSKNKKYHAIPLNPVRKLNETEKAKTEQ KL*
Translation from 406 to 1764
> RE54525.pep MEKLITICLLLRILQSCAMPIIDPDSIDESLACPPCENDFPICYKVIVEV ERGNGLPGSCCPRYECLDEEPVCDGSKRRFYKNKCTVCDPCEPLAIQCKE ICPMEEPEPICLSDNNEYHRNGDIWMENNGCTTCMCEGGYVTRNAVQCNH YYRCNNPVEVKGQCCPVCPDELGVSNSIYDDGNHKYRNTTSAPILGESES SSSGWSSTVPTDTSDSVPDTSGSPNSSSTSSELATPTPNTSELSSSTERT STDSSYEQLGEFATSESPDLRTDSEEQETSSSDSAMETTTNPTTFEATAT STVSSTSMELPTATDDGITKMDFNPDGRTPKATDEPTVILVNATNFLSVV TDNPITNQPAVVAPESTSQIKDLNSMEIQQIRYPYAEVPQERIQTDWPLE CVVIMGFVILIVFISLYAIVKRYSKNKKYHAIPLNPVRKLNETEKAKTEQ KL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24123-PA | 418 | GF24123-PA | 6..289 | 18..287 | 220 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13300-PA | 447 | GG13300-PA | 18..447 | 18..452 | 1574 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16983-PA | 695 | GH16983-PA | 108..232 | 45..170 | 193 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rcd2-PA | 452 | CG4786-PA | 1..452 | 1..452 | 2420 | 100 | Plus |
CG13252-PA | 384 | CG13252-PA | 116..312 | 34..247 | 170 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11903-PA | 454 | GI11903-PA | 79..201 | 46..170 | 174 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12768-PA | 497 | GL12768-PA | 17..167 | 18..171 | 294 | 45.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18431-PA | 479 | GA18431-PA | 7..157 | 18..171 | 298 | 46.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22202-PA | 451 | GM22202-PA | 1..451 | 1..452 | 1967 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12177-PA | 451 | GD12177-PA | 1..451 | 1..452 | 1996 | 91.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13777-PA | 589 | GJ13777-PA | 78..197 | 45..168 | 218 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10574-PA | 544 | GK10574-PA | 81..453 | 33..377 | 242 | 29.8 | Plus |