Clone RE54525 Report

Search the DGRC for RE54525

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:545
Well:25
Vector:pFlc-1
Associated Gene/TranscriptRcd2-RA
Protein status:RE54525.pep: gold
Preliminary Size:1305
Sequenced Size:2251

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4786 2002-01-01 Sim4 clustering to Release 2
CG4786 2003-01-01 Sim4 clustering to Release 3
CG4786 2003-01-22 Blastp of sequenced clone
CG4786 2008-04-29 Release 5.5 accounting
CG4786 2008-08-15 Release 5.9 accounting
CG4786 2008-12-18 5.12 accounting

Clone Sequence Records

RE54525.complete Sequence

2251 bp (2251 high quality bases) assembled on 2003-01-22

GenBank Submission: AY075507

> RE54525.complete
AGTCTGCTGGAAACCTCCACTGTAATCGGTTGTGTGCTGTGCTCTAGTGA
AAAATCCCGAAACCTCACATATTTATCACCTTAAAAGCGGCGTCTCAAAC
AAAACACAAATACGCAGCACTGCGAAAAAGACCAGCATCGGGGCTAAATC
AAAAATAAAAACAACTAAGAAACAACTAAAAAACAAGAGACCAAATGGAC
AGACAGGCGGTCAATTGAAAACAAATAGTACAATGAAGTTTTATTTTTGG
ATCAGTTAGACTCTCGACAAGTAAAGTAAAGATATTTAGTGCAGCGCAAC
TAAAAAAAGAGCAGAAACACGTATTTACAATTATCACAGTTAATCAAAGA
TATATATACGCGTTTATATATATATTTAATCAGCCTTTGGACTTTGAACG
TAAGAAATGGAAAAGTTAATCACAATTTGCCTCCTCCTGAGGATTCTACA
ATCGTGTGCTATGCCCATTATTGACCCAGATAGTATAGACGAATCCCTTG
CGTGTCCACCGTGTGAGAATGACTTTCCCATCTGTTACAAAGTGATCGTG
GAGGTGGAACGGGGCAATGGACTGCCCGGTAGCTGTTGTCCTCGCTACGA
GTGCCTCGATGAGGAACCTGTCTGCGATGGTTCCAAAAGGAGATTCTATA
AGAACAAGTGCACTGTGTGCGATCCTTGCGAACCGCTGGCCATTCAGTGC
AAGGAAATATGTCCAATGGAAGAACCCGAACCCATTTGCCTGTCTGACAA
CAATGAGTACCACAGAAATGGCGATATTTGGATGGAAAACAATGGTTGTA
CTACATGCATGTGCGAAGGTGGATATGTCACCCGCAATGCTGTTCAGTGC
AATCATTATTATCGGTGCAACAATCCCGTTGAGGTCAAGGGACAGTGCTG
TCCGGTTTGTCCGGACGAGCTGGGTGTGAGTAACAGTATCTATGACGATG
GTAATCACAAGTATAGAAACACCACTTCAGCACCAATTTTGGGCGAAAGC
GAATCCTCCAGTTCAGGGTGGAGCTCCACTGTGCCAACAGATACTTCTGA
TTCCGTTCCAGACACCAGCGGTTCACCCAATAGCTCATCTACATCATCTG
AACTGGCCACACCGACTCCGAACACAAGTGAATTATCCAGTTCCACAGAG
AGGACAAGTACGGATTCGAGTTATGAACAACTTGGAGAATTTGCCACTTC
CGAGTCGCCGGATCTCAGAACCGACTCAGAAGAACAAGAAACCTCAAGTT
CTGATTCTGCAATGGAGACTACCACAAATCCAACCACATTCGAAGCAACA
GCAACTTCCACAGTTTCAAGCACTTCAATGGAACTTCCCACTGCAACAGA
TGATGGTATCACCAAAATGGATTTTAATCCTGATGGCAGAACACCGAAAG
CAACTGATGAGCCCACCGTGATCTTAGTCAATGCAACTAACTTCTTATCC
GTGGTGACCGATAATCCCATCACGAATCAACCGGCGGTCGTGGCGCCCGA
ATCGACCAGTCAGATTAAGGATCTCAACAGTATGGAGATCCAGCAAATAA
GGTATCCCTACGCAGAGGTGCCCCAGGAGCGCATCCAAACCGATTGGCCT
TTGGAATGCGTGGTTATAATGGGCTTTGTTATACTTATAGTGTTTATATC
CCTTTATGCCATCGTGAAGAGATATTCGAAAAACAAAAAATACCATGCCA
TACCATTAAATCCAGTTCGAAAGCTGAATGAAACGGAGAAAGCGAAGACG
GAGCAAAAGTTGTGATTCCTGCACAGAGAGAAAATTATAGTTCCAGGTTG
CCATCTCAGTTTATCAGTTCGTTTTTTCTCTGTGTGAATTCCATCCTCCT
GCAGACTGATTTTTGATCTTAAAAATTATACCAAAACAGTGGATGAAGTC
TGCATGATAGTACTACTTAGGAAAAGAAACTATACTTTGTCGTCAGTCCA
GAGATAAGCATACAATTTGATCTTTAAACTATGCTCAAATCAATAAATAA
AGCGATTAGGTTTAGCAGTAGGAGTTAAGCAGTTAAGGAATACGTTATTA
ATTATAATTGGAAAGTATTAGTTTGATTGTAAATTATAATTACTGCACAC
GCAGAATTGTTGCATTAGAGTGATTACATATCAAACGCTCGCACTCATAT
AATTTTAAATTATTATACCCAAAACTCATCAACTACATTCATTCCAAAGC
ATACAAAAATAAAGAAAAAGAAACCAAAGCTAAACAAAAAAAAAAAAAAA
A

RE54525.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd2-RA 2332 Rcd2-RA 63..2301 1..2239 11180 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20516969..20518746 2235..458 8890 100 Minus
chr3L 24539361 chr3L 20529122..20529402 281..1 1390 99.6 Minus
chr3L 24539361 chr3L 20527886..20528064 458..280 895 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20527975..20529756 2239..458 8910 100 Minus
3L 28110227 3L 20540134..20540414 281..1 1390 99.6 Minus
3L 28110227 3L 20538898..20539076 458..280 895 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20521075..20522856 2239..458 8910 100 Minus
3L 28103327 3L 20533234..20533514 281..1 1390 99.6 Minus
3L 28103327 3L 20531998..20532176 458..280 895 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:28:37 has no hits.

RE54525.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:29:17 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20516969..20518745 459..2235 100 <- Minus
chr3L 20527886..20528062 282..458 100 <- Minus
chr3L 20529122..20529402 1..281 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:59:23 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
CG4786-RA 1..1359 407..1765 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:53:49 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd2-RA 1..1359 407..1765 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:20:25 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd2-RA 1..1359 407..1765 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:54 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
CG4786-RA 1..1359 407..1765 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:28:30 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd2-RA 1..1359 407..1765 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:22 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
CG4786-RA 1..2235 1..2235 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:53:49 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd2-RA 1..2235 1..2235 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:20:25 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd2-RA 4..2238 1..2235 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:55 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
CG4786-RA 1..2235 1..2235 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:30 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd2-RA 4..2238 1..2235 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:29:17 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20540134..20540414 1..281 99   Minus
3L 20527979..20529755 459..2235 100 <- Minus
3L 20538898..20539074 282..458 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:29:17 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20540134..20540414 1..281 99   Minus
3L 20527979..20529755 459..2235 100 <- Minus
3L 20538898..20539074 282..458 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:29:17 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20540134..20540414 1..281 99   Minus
3L 20527979..20529755 459..2235 100 <- Minus
3L 20538898..20539074 282..458 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:20:25 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20533234..20533514 1..281 99   Minus
arm_3L 20521079..20522855 459..2235 100 <- Minus
arm_3L 20531998..20532174 282..458 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:15:48 Download gff for RE54525.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20531998..20532174 282..458 100 <- Minus
3L 20521079..20522855 459..2235 100 <- Minus
3L 20533234..20533514 1..281 99   Minus

RE54525.hyp Sequence

Translation from 406 to 1764

> RE54525.hyp
MEKLITICLLLRILQSCAMPIIDPDSIDESLACPPCENDFPICYKVIVEV
ERGNGLPGSCCPRYECLDEEPVCDGSKRRFYKNKCTVCDPCEPLAIQCKE
ICPMEEPEPICLSDNNEYHRNGDIWMENNGCTTCMCEGGYVTRNAVQCNH
YYRCNNPVEVKGQCCPVCPDELGVSNSIYDDGNHKYRNTTSAPILGESES
SSSGWSSTVPTDTSDSVPDTSGSPNSSSTSSELATPTPNTSELSSSTERT
STDSSYEQLGEFATSESPDLRTDSEEQETSSSDSAMETTTNPTTFEATAT
STVSSTSMELPTATDDGITKMDFNPDGRTPKATDEPTVILVNATNFLSVV
TDNPITNQPAVVAPESTSQIKDLNSMEIQQIRYPYAEVPQERIQTDWPLE
CVVIMGFVILIVFISLYAIVKRYSKNKKYHAIPLNPVRKLNETEKAKTEQ
KL*

RE54525.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd2-PA 452 CG4786-PA 1..452 1..452 2420 100 Plus
CG13252-PA 384 CG13252-PA 116..312 34..247 170 30 Plus

RE54525.pep Sequence

Translation from 406 to 1764

> RE54525.pep
MEKLITICLLLRILQSCAMPIIDPDSIDESLACPPCENDFPICYKVIVEV
ERGNGLPGSCCPRYECLDEEPVCDGSKRRFYKNKCTVCDPCEPLAIQCKE
ICPMEEPEPICLSDNNEYHRNGDIWMENNGCTTCMCEGGYVTRNAVQCNH
YYRCNNPVEVKGQCCPVCPDELGVSNSIYDDGNHKYRNTTSAPILGESES
SSSGWSSTVPTDTSDSVPDTSGSPNSSSTSSELATPTPNTSELSSSTERT
STDSSYEQLGEFATSESPDLRTDSEEQETSSSDSAMETTTNPTTFEATAT
STVSSTSMELPTATDDGITKMDFNPDGRTPKATDEPTVILVNATNFLSVV
TDNPITNQPAVVAPESTSQIKDLNSMEIQQIRYPYAEVPQERIQTDWPLE
CVVIMGFVILIVFISLYAIVKRYSKNKKYHAIPLNPVRKLNETEKAKTEQ
KL*

RE54525.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24123-PA 418 GF24123-PA 6..289 18..287 220 30.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13300-PA 447 GG13300-PA 18..447 18..452 1574 76.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16983-PA 695 GH16983-PA 108..232 45..170 193 35.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd2-PA 452 CG4786-PA 1..452 1..452 2420 100 Plus
CG13252-PA 384 CG13252-PA 116..312 34..247 170 30 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11903-PA 454 GI11903-PA 79..201 46..170 174 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12768-PA 497 GL12768-PA 17..167 18..171 294 45.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18431-PA 479 GA18431-PA 7..157 18..171 298 46.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22202-PA 451 GM22202-PA 1..451 1..452 1967 89.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12177-PA 451 GD12177-PA 1..451 1..452 1996 91.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13777-PA 589 GJ13777-PA 78..197 45..168 218 35.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10574-PA 544 GK10574-PA 81..453 33..377 242 29.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22392-PA 657 GE22392-PA 225..657 18..452 1750 80.2 Plus
Dyak\GE22738-PA 432 GE22738-PA 1..432 19..452 1729 79.7 Plus