Clone RE54550 Report

Search the DGRC for RE54550

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:545
Well:50
Vector:pFlc-1
Associated Gene/TranscriptRab40-RB
Protein status:RE54550.pep: gold
Sequenced Size:1630

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1900 2003-01-01 Sim4 clustering to Release 3
CG1900 2004-08-13 Blastp of sequenced clone
Rab40 2008-04-29 Release 5.5 accounting
Rab40 2008-08-15 Release 5.9 accounting
Rab40 2008-12-18 5.12 accounting

Clone Sequence Records

RE54550.complete Sequence

1630 bp (1630 high quality bases) assembled on 2004-08-13

GenBank Submission: BT015987

> RE54550.complete
AGTTCTTCCATCCCTATAGAGATGAGCGAAATTGCAATTTTCTGTTTTAA
TATTCGCAGCAGAAAAAACAACAAATAAACAGCAATAAATTGGAATATAT
GGGATATATAGCCGCGATTTAACTTGCTTAAATCGTAAGACTGAAAAAGC
GTGTAAAGCCCGCCGAGGTGAAGTCGCCAAAGCGAGGAAACTCGCTCATC
TCTATTACAAATACGAAAATGAAACTGCGTGCATTCTAAATGCCACATGG
GAACCATGACCAAGGACTACGACTATCTGCTAAAGGTTCTACTGGTGGGC
GACAGCGATGTGGGCAAGCACGAGATTCTCTCAAACCTGGAGGATCCCTC
CACGGAGAGTCCCTTCTGCAGTGGGAACGACTGCACATCTCATATCCTTC
AAACGGTAGCCTACAAGACGACCACCATCCTGCTGGAGGGCAAGCGGGTG
AAGCTGCAGCTGTGGGACACCTCCGGCCAGGGACGCTTCTGCACGATCAT
TCGCTCCTATTCGCGCGGCGCCCAGGGCATCATCCTCGTCTACGACATCA
CCAACAAGTGGAGCTTCGACGGTATCGATCGGTGGCTCAAGGAGGTCGAC
GAGCACGCCCCAGGAATTCCGAAGGTTCTTGTCGGGAATCGCCTGCACTT
GGCCTTCAAGCGACAGGTGGCGGCCAAACAGGCCGAGACCTACGCCAGCC
GCAACAATATGTCCTGCTTCGAGATATCGCCTCTCTGCAACTTCAACATC
CGCGAGTCCTTTTGCGAACTGGCGCGGATGGCCCTGCATCGCAACGGCAT
GGAGCACATCTGGCGCAGCAATAAGGTGCTGTCGCTTCAGGAATTGTGCT
GCAGGACAATTGTGCGAAGGACGAGCGTGTATGCGATCGATTCGCTGCCG
CTGCCGCCGTCGGTGAAGTCGACGCTCAAGTCATACGCGCTGACCACGTC
CCAGTGCTTCAATTCACTGACCCAGAGCTCCAAGAGCAAGAACCGCTGCA
AGACGCCGACGAGCAGCAGTCGGAATAGCTGTGCGATCGCGTGATCGTTG
CCTTGTAGGCCGCCGCCCAGCCGCCTACGCCGCCACGCCCCTAACCGACA
TTAACTTTAATTGAGCTCTACTTATGTACTCTAGGCTATAACACACACAC
ACACACACACACCCATACCATACCCATACCCATTACCATACACACATTCA
ACCCAGCTCTTTGGTTATATGTTTTGTTTTATTGACATTGATATTTGTGG
TCAACAATGTTTACTTTTTACACAGTAAAGCATGCACCTTTTTTAGTTTT
TAACCACCCCCATCCCAGGCCCATTCCCCCAACTTCTCTATTTTGCATTA
ATCTAATGTTGTTAATATTATTATGTTTGTATAATTCTAATATTTAATGC
ATCAAACACATCAACATATAAGAAATGAAAAACAAAAACGAAGAAATAAC
ATCAAGTGAAAATCAACTTTTATATGGATAAAAAGAATTAAATTTTTTTT
TTGTTTGTTTACCATTCGGATTAAAATATTCTTAGATATGTATTGTAATT
GAAGCGAATTCAGCAAGAGAAGCACACACAAAGGCGAATTGATAAAAATA
ATTCATAATGAACTAAAAAAAAAAAAAAAA

RE54550.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Rab40-RB 1631 Rab40-RB 12..1631 1..1620 8085 99.9 Plus
Rab40-RA 1601 Rab40-RA 390..1601 409..1620 6045 99.9 Plus
Rab40.a 1411 Rab40.a 206..1411 409..1614 6030 100 Plus
Rab40-RA 1601 Rab40-RA 12..390 1..379 1895 100 Plus
Rab40.a 1411 Rab40.a 69..206 242..379 690 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12350770..12351558 1614..826 3900 99.6 Minus
chrX 22417052 chrX 12353832..12354073 242..1 1210 100 Minus
chrX 22417052 chrX 12351963..12352187 826..602 1125 100 Minus
chrX 22417052 chrX 12352430..12352654 603..379 1125 100 Minus
chrX 22417052 chrX 12352710..12352847 379..242 675 99.3 Minus
chrX 22417052 chrX 20046600..20046719 555..436 195 77.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12459790..12460584 1620..826 3960 99.9 Minus
X 23542271 X 12462867..12463108 242..1 1210 100 Minus
X 23542271 X 12460989..12461213 826..602 1125 100 Minus
X 23542271 X 12461456..12461680 603..379 1125 100 Minus
X 23542271 X 12461736..12461873 379..242 690 100 Minus
X 23542271 X 20158046..20158165 555..436 195 77.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12467888..12468682 1620..826 3960 99.8 Minus
X 23527363 X 12470965..12471206 242..1 1210 100 Minus
X 23527363 X 12469554..12469778 603..379 1125 100 Minus
X 23527363 X 12469087..12469311 826..602 1125 100 Minus
X 23527363 X 12469834..12469971 379..242 690 100 Minus
X 23527363 X 20166144..20166263 555..436 195 77.5 Minus
Blast to na_te.dros performed 2019-03-16 07:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6505..6616 1377..1491 126 60.3 Plus

RE54550.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:45:50 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12350770..12351557 827..1614 99 <- Minus
chrX 12351963..12352185 604..826 100 <- Minus
chrX 12352430..12352653 380..603 100 <- Minus
chrX 12352710..12352846 243..379 99 <- Minus
chrX 12353832..12354073 1..242 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:28 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
Rab40-RB 1..798 247..1044 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:21 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
Rab40-RB 1..798 247..1044 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:34:36 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
Rab40-RB 1..798 247..1044 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:16:12 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
Rab40-RB 1..798 247..1044 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:04 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
Rab40-RB 1..798 247..1044 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:37:32 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
Rab40-RB 1..1614 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:21 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
Rab40-RB 1..1614 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:36 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
Rab40-RB 5..1618 1..1614 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:16:12 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
Rab40-RB 1..1614 1..1614 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:04 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
Rab40-RB 5..1618 1..1614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:50 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
X 12459796..12460583 827..1614 100 <- Minus
X 12460989..12461211 604..826 100 <- Minus
X 12461456..12461679 380..603 100 <- Minus
X 12461736..12461872 243..379 100 <- Minus
X 12462867..12463108 1..242 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:50 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
X 12459796..12460583 827..1614 100 <- Minus
X 12460989..12461211 604..826 100 <- Minus
X 12461456..12461679 380..603 100 <- Minus
X 12461736..12461872 243..379 100 <- Minus
X 12462867..12463108 1..242 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:50 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
X 12459796..12460583 827..1614 100 <- Minus
X 12460989..12461211 604..826 100 <- Minus
X 12461456..12461679 380..603 100 <- Minus
X 12461736..12461872 243..379 100 <- Minus
X 12462867..12463108 1..242 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:36 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12353829..12354616 827..1614 100 <- Minus
arm_X 12355022..12355244 604..826 100 <- Minus
arm_X 12355489..12355712 380..603 100 <- Minus
arm_X 12355769..12355905 243..379 100 <- Minus
arm_X 12356900..12357141 1..242 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:53:08 Download gff for RE54550.complete
Subject Subject Range Query Range Percent Splice Strand
X 12469554..12469777 380..603 100 <- Minus
X 12469834..12469970 243..379 100 <- Minus
X 12470965..12471206 1..242 100   Minus
X 12467894..12468681 827..1614 100 <- Minus
X 12469087..12469309 604..826 100 <- Minus

RE54550.pep Sequence

Translation from 246 to 1043

> RE54550.pep
MGTMTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHI
LQTVAYKTTTILLEGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYD
ITNKWSFDGIDRWLKEVDEHAPGIPKVLVGNRLHLAFKRQVAAKQAETYA
SRNNMSCFEISPLCNFNIRESFCELARMALHRNGMEHIWRSNKVLSLQEL
CCRTIVRRTSVYAIDSLPLPPSVKSTLKSYALTTSQCFNSLTQSSKSKNR
CKTPTSSSRNSCAIA*

RE54550.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19504-PA 262 GF19504-PA 1..262 4..265 1387 98.1 Plus
Dana\GF20241-PA 204 GF20241-PA 4..173 6..182 375 44.4 Plus
Dana\GF10843-PA 207 GF10843-PA 1..166 4..176 341 41.4 Plus
Dana\GF17263-PA 205 GF17263-PA 1..177 1..184 324 38.9 Plus
Dana\GF20451-PA 200 GF20451-PA 1..170 4..181 321 36.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19552-PA 262 GG19552-PA 1..262 4..265 1399 99.2 Plus
Dere\GG19277-PA 204 GG19277-PA 4..173 6..182 369 43.8 Plus
Dere\GG13365-PA 207 GG13365-PA 1..166 4..176 341 41.4 Plus
Dere\GG14761-PA 205 GG14761-PA 1..177 1..184 324 38.9 Plus
Dere\GG18010-PA 201 GG18010-PA 1..169 4..180 323 36.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17961-PA 262 GH17961-PA 1..262 4..265 1361 95.4 Plus
Dgri\GH12621-PA 204 GH12621-PA 4..173 6..182 368 43.8 Plus
Dgri\GH16908-PA 207 GH16908-PA 1..166 4..176 341 41.4 Plus
Dgri\GH18937-PA 205 GH18937-PA 1..177 1..184 326 39.5 Plus
Dgri\GH24326-PA 201 GH24326-PA 1..170 4..181 320 35.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rab40-PB 265 CG1900-PB 1..265 1..265 1390 100 Plus
Rab40-PC 255 CG1900-PC 1..255 1..265 1315 96.2 Plus
Rab40-PA 255 CG1900-PA 1..255 1..265 1315 96.2 Plus
Rab10-PA 204 CG17060-PA 4..187 6..195 358 42.2 Plus
Rab8-PC 207 CG8287-PC 1..166 4..176 331 41.4 Plus
Rab8-PA 207 CG8287-PA 1..166 4..176 331 41.4 Plus
Rab35-PB 201 CG9575-PB 1..169 4..180 316 38.4 Plus
Rab35-PD 201 CG9575-PD 1..169 4..180 316 38.4 Plus
Rab35-PA 201 CG9575-PA 1..169 4..180 316 38.4 Plus
Rab1-PA 205 CG3320-PA 1..177 1..184 314 38.9 Plus
Rab11-PA 214 CG5771-PA 1..202 1..218 308 34.5 Plus
Rab11-PB 214 CG5771-PB 1..202 1..218 308 34.5 Plus
RabX4-PA 213 CG31118-PA 1..168 4..177 278 38.1 Plus
Rab26-PE 410 CG34410-PE 208..382 7..187 275 35.1 Plus
Rab26-PD 410 CG34410-PD 208..382 7..187 275 35.1 Plus
Rab26-PC 410 CG34410-PC 208..382 7..187 275 35.1 Plus
Rab4-PA 213 CG4921-PA 1..170 4..180 273 37.6 Plus
Rab4-PB 213 CG4921-PB 1..170 4..180 273 37.6 Plus
Rab9Fb-PA 214 CG32670-PA 4..175 8..181 268 36.8 Plus
Rab8-PB 172 CG8287-PB 8..131 54..176 267 42.7 Plus
Rab3-PB 220 CG7576-PB 16..175 6..172 266 33.9 Plus
Rab3-PA 220 CG7576-PA 16..175 6..172 266 33.9 Plus
Rab35-PC 190 CG9575-PC 32..158 54..180 265 40.9 Plus
Rab14-PD 215 CG4212-PD 7..170 7..177 263 34.9 Plus
Rab14-PA 215 CG4212-PA 7..170 7..177 263 34.9 Plus
Rab14-PB 239 CG4212-PB 31..194 7..177 263 34.9 Plus
Rab2-PB 213 CG3269-PB 3..165 8..177 260 34.5 Plus
Rab2-PA 213 CG3269-PA 3..165 8..177 260 34.5 Plus
RabX2-PA 195 CG2885-PA 4..171 8..182 259 37.1 Plus
Rab19-PB 219 CG7062-PP3-RB 18..181 8..176 250 35.8 Plus
Rab19-PA 219 CG7062-PA 18..181 8..176 250 35.8 Plus
Rab30-PD 223 CG9100-PD 2..164 6..176 249 35.5 Plus
Rab30-PC 223 CG9100-PC 2..164 6..176 249 35.5 Plus
Rab30-PB 223 CG9100-PB 2..164 6..176 249 35.5 Plus
Rab30-PA 223 CG9100-PA 2..164 6..176 249 35.5 Plus
Rab26-PG 388 CG34410-PG 192..360 13..187 240 34.6 Plus
Rab26-PB 388 CG34410-PB 192..360 13..187 240 34.6 Plus
Rab39-PB 218 CG12156-PB 6..168 8..172 228 34.1 Plus
Rab39-PA 218 CG12156-PA 6..168 8..172 228 34.1 Plus
Rab26-PF 373 CG34410-PF 214..345 57..187 228 37.6 Plus
Rab6-PB 208 CG6601-PB 14..170 13..176 223 32.1 Plus
Rab6-PA 208 CG6601-PA 14..170 13..176 223 32.1 Plus
Rab5-PI 219 CG3664-PI 31..195 13..184 220 32.9 Plus
Rab5-PH 219 CG3664-PH 31..195 13..184 220 32.9 Plus
Rab5-PG 219 CG3664-PG 31..195 13..184 220 32.9 Plus
Rab5-PE 219 CG3664-PE 31..195 13..184 220 32.9 Plus
Rab5-PC 219 CG3664-PC 31..195 13..184 220 32.9 Plus
Rab5-PD 219 CG3664-PD 31..195 13..184 220 32.9 Plus
Rab5-PF 219 CG3664-PF 31..195 13..184 220 32.9 Plus
Rab5-PB 219 CG3664-PB 31..195 13..184 220 32.9 Plus
Rab5-PA 219 CG3664-PA 31..195 13..184 220 32.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21615-PA 262 GI21615-PA 1..262 4..265 1359 95.8 Plus
Dmoj\GI11034-PA 204 GI11034-PA 4..173 6..182 374 43.8 Plus
Dmoj\GI13664-PA 207 GI13664-PA 1..166 4..176 341 41.4 Plus
Dmoj\GI10837-PA 205 GI10837-PA 1..177 1..184 327 39.5 Plus
Dmoj\GI14806-PA 201 GI14806-PA 1..169 4..180 318 35.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25374-PA 265 GL25374-PA 1..265 1..265 1403 98.5 Plus
Dper\GL15675-PA 207 GL15675-PA 1..166 4..176 340 41.4 Plus
Dper\GL27164-PA 205 GL27164-PA 1..177 1..184 324 38.9 Plus
Dper\GL21786-PA 214 GL21786-PA 1..202 1..218 319 34.7 Plus
Dper\GL12921-PA 200 GL12921-PA 1..170 4..181 302 34.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15118-PA 262 GA15118-PA 1..262 4..265 1386 98.5 Plus
Dpse\GA26078-PA 204 GA26078-PA 4..173 6..182 365 43.8 Plus
Dpse\GA23499-PA 207 GA23499-PA 1..166 4..176 340 41.4 Plus
Dpse\GA17362-PA 205 GA17362-PA 1..177 1..184 324 38.9 Plus
Dpse\GA19116-PA 214 GA19116-PA 1..202 1..218 319 34.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11551-PA 252 GM11551-PA 1..252 4..265 1327 95.8 Plus
Dsec\GM23016-PA 204 GM23016-PA 4..173 6..182 369 43.8 Plus
Dsec\GM15893-PA 207 GM15893-PA 1..166 4..176 341 41.4 Plus
Dsec\GM15089-PA 205 GM15089-PA 1..177 1..184 324 38.9 Plus
Dsec\GM22691-PA 201 GM22691-PA 1..169 4..180 324 36.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24662-PA 252 GD24662-PA 1..252 4..265 1327 95.8 Plus
Dsim\GD12244-PA 207 GD12244-PA 1..166 4..176 341 41.4 Plus
Dsim\GD19996-PA 205 GD19996-PA 1..177 1..184 324 38.9 Plus
Dsim\GD15551-PA 201 GD15551-PA 1..169 4..180 324 36.7 Plus
Dsim\GD19397-PA 198 GD19397-PA 1..182 1..188 315 38.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16552-PA 262 GJ16552-PA 1..262 4..265 1363 95.8 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 4..173 6..182 371 43.8 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 1..166 4..176 341 41.4 Plus
Dvir\GJ14443-PA 205 GJ14443-PA 1..177 1..184 327 39.5 Plus
Dvir\GJ19473-PA 201 GJ19473-PA 1..170 4..181 325 35.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16129-PA 252 GK16129-PA 1..252 4..265 1292 92.7 Plus
Dwil\GK25049-PA 204 GK25049-PA 4..173 6..182 370 43.8 Plus
Dwil\GK17214-PA 207 GK17214-PA 1..166 4..176 340 41.4 Plus
Dwil\GK12772-PA 205 GK12772-PA 1..177 1..184 329 39.5 Plus
Dwil\GK16335-PA 200 GK16335-PA 1..170 4..181 323 35.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16214-PA 252 GE16214-PA 1..252 4..265 1327 95.8 Plus
Dyak\GE17866-PA 204 GE17866-PA 4..173 6..182 369 43.8 Plus
Dyak\GE22459-PA 207 GE22459-PA 1..166 4..176 341 41.4 Plus
Dyak\Rab1-PA 205 GE25003-PA 1..177 1..184 324 38.9 Plus
Dyak\GE17342-PA 201 GE17342-PA 1..169 4..180 323 36.7 Plus

RE54550.hyp Sequence

Translation from 246 to 1043

> RE54550.hyp
MGTMTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHI
LQTVAYKTTTILLEGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYD
ITNKWSFDGIDRWLKEVDEHAPGIPKVLVGNRLHLAFKRQVAAKQAETYA
SRNNMSCFEISPLCNFNIRESFCELARMALHRNGMEHIWRSNKVLSLQEL
CCRTIVRRTSVYAIDSLPLPPSVKSTLKSYALTTSQCFNSLTQSSKSKNR
CKTPTSSSRNSCAIA*

RE54550.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rab40-PB 265 CG1900-PB 1..265 1..265 1390 100 Plus
Rab40-PC 255 CG1900-PC 1..255 1..265 1315 96.2 Plus
Rab40-PA 255 CG1900-PA 1..255 1..265 1315 96.2 Plus
Rab10-PA 204 CG17060-PA 4..187 6..195 358 42.2 Plus
Rab8-PC 207 CG8287-PC 1..166 4..176 331 41.4 Plus