Clone RE54691 Report

Search the DGRC for RE54691

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:546
Well:91
Vector:pFlc-1
Associated Gene/TranscriptCG3803-RA
Protein status:RE54691.pep: gold
Preliminary Size:1208
Sequenced Size:1324

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3803 2001-12-14 Blastp of sequenced clone
CG3803 2002-01-01 Sim4 clustering to Release 2
CG3803 2003-01-01 Sim4 clustering to Release 3
CG3803 2008-04-29 Release 5.5 accounting
CG3803 2008-08-15 Release 5.9 accounting
CG3803 2008-12-18 5.12 accounting

Clone Sequence Records

RE54691.complete Sequence

1324 bp (1324 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071468

> RE54691.complete
GGCACTTGGTAGCGGCTTTGTAAATATAGTTAAAAAACAAAATATATCCT
TTAATATTTGCTGTAAGCTTAAGTTAATCTCTCCAAACTTGAAATAACAC
AATGCTGCGATTGCTCCAGAAGAGAACCAATCTCATAAAGCTAGTAGTAC
CCGGCCCCCGACTTCACCAGACGATTGCGCAAACAGCGATAAAGGAAATC
CCAGTGATAAAGCCCATCAGCACTCCGAAAAGCGACAAGACCGTCGGAAG
ATGGTTCCTGGGAGTCAGCGGCATGGTCTTCGTGGCCGTTGGTCTAGGCG
GAGTAACCCGACTGACAGAGTCCGGACTGTCCATGGTCACTTGGAAGCTG
ACGGGTGAACGTATGCCCCGAACCCAGGAGGAATGGGTGCAGGAGTTCAA
TCTCTACCAGCAATACCCAGAGTACAAGCTAAAGAATGTGAATATGACCG
TGGAGGAGTTCAAGTTCATTTTCATGATGGAGTACATGCACAGGATGTGG
GGTCGTGCCATCGGCGGGTTCTTCCTTTTGCCCGCTGTTTACTTCTGGAG
AAAGGGATACTTCTGTGCGAAGACCAAGAAGAGCGTCCTGCTGCTGGGCA
CACTGATTGGCCTGCAAGGTCTGATGGGATGGTACATGGTCAAGTCCGGG
CTGGAAGACAGGTTCCAGGATCCCAACGACGTGCCACGGGTATCCCAGTA
TAGATTGGCCTCCCACCTGGCAGCTGCCTTCGTCCTGTACTCACTCTCCC
TGTCAAAGGCCATGTCCCTGCTCATCCCCACGAACACATTCGTGATCCAA
GCCAAGAAAGCATTTAATATCAAGGGGCTGACGCATTTGACGAAGGCAAT
GGTCCTGCTGACTGCCATTTCTGGAGCCTTTGTAGCCGGACTAGACGCCG
GACTCGTGTACAACTCGTTCCCGAAGATGGGCGACAAGTGGATTCCCGAT
GACATGTGGACGTTTGCGCCCATACAGAAGAACATCACCGAGAATCCGAC
GACGGTGCAGTTCAATCACCGCATCCTTGGTATTAGCACAGTAACGCTGA
CCACCGCTCTGTGGCTGGTCACCAGAAGGATGCAGTTGCCCAAGCGCGCC
AACTGGGCCATCAACGCCGTGGTGGCTATGGCCTGGACGCAGGCCACGCT
TGGCGTAACCACCTTGCTTAACTACGTGCCCGTGCCTCTGGCAACGGCCC
ACCAGTCGGGCTCGCTTATTCTGCTGAGTTTCGCATTGTGGCTGTCGCAC
GAGGTTCGACTGTTGAAGTACCTTCCGAAGTAAATAAATAGGCGTTTATT
TGTTGAACAAAAAAAAAAAAAAAA

RE54691.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3803-RA 1531 CG3803-RA 26..1337 3..1314 6545 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19838587..19839464 1308..431 4285 99.2 Minus
chr2R 21145070 chr2R 19839896..19840089 195..3 830 96.4 Minus
chr2R 21145070 chr2R 19839523..19839657 430..296 675 100 Minus
chr2R 21145070 chr2R 19839712..19839817 298..193 515 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23952507..23953390 1314..431 4405 99.9 Minus
2R 25286936 2R 23953822..23954014 195..3 965 100 Minus
2R 25286936 2R 23953449..23953583 430..296 675 100 Minus
2R 25286936 2R 23953638..23953743 298..193 530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23953706..23954589 1314..431 4405 99.8 Minus
2R 25260384 2R 23955021..23955213 195..3 965 100 Minus
2R 25260384 2R 23954648..23954782 430..296 675 100 Minus
2R 25260384 2R 23954837..23954942 298..193 530 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:21:42 has no hits.

RE54691.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:22:24 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19838587..19839464 431..1308 99 <- Minus
chr2R 19839523..19839655 298..430 100 <- Minus
chr2R 19839713..19839815 195..297 99 <- Minus
chr2R 19839897..19840089 1..194 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:34 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 1..1182 102..1283 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:14 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 1..1182 102..1283 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:31 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 1..1182 102..1283 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:35:29 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 1..1182 102..1283 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:39 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 1..1182 102..1283 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:41:26 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 2..1303 3..1304 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:14 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 2..1303 3..1304 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:31 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 24..1331 1..1308 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:35:30 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 2..1303 3..1304 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:39 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 33..1340 1..1308 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:24 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23952513..23953390 431..1308 100 <- Minus
2R 23953449..23953581 298..430 100 <- Minus
2R 23953639..23953741 195..297 100 <- Minus
2R 23953823..23954014 1..194 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:24 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23952513..23953390 431..1308 100 <- Minus
2R 23953449..23953581 298..430 100 <- Minus
2R 23953639..23953741 195..297 100 <- Minus
2R 23953823..23954014 1..194 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:24 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23952513..23953390 431..1308 100 <- Minus
2R 23953449..23953581 298..430 100 <- Minus
2R 23953639..23953741 195..297 100 <- Minus
2R 23953823..23954014 1..194 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:31 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19840036..19840913 431..1308 100 <- Minus
arm_2R 19840972..19841104 298..430 100 <- Minus
arm_2R 19841162..19841264 195..297 100 <- Minus
arm_2R 19841346..19841537 1..194 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:12:45 Download gff for RE54691.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23954856..23954958 195..297 100 <- Minus
2R 23955040..23955231 1..194 98   Minus
2R 23953730..23954607 431..1308 100 <- Minus
2R 23954666..23954798 298..430 100 <- Minus

RE54691.pep Sequence

Translation from 101 to 1282

> RE54691.pep
MLRLLQKRTNLIKLVVPGPRLHQTIAQTAIKEIPVIKPISTPKSDKTVGR
WFLGVSGMVFVAVGLGGVTRLTESGLSMVTWKLTGERMPRTQEEWVQEFN
LYQQYPEYKLKNVNMTVEEFKFIFMMEYMHRMWGRAIGGFFLLPAVYFWR
KGYFCAKTKKSVLLLGTLIGLQGLMGWYMVKSGLEDRFQDPNDVPRVSQY
RLASHLAAAFVLYSLSLSKAMSLLIPTNTFVIQAKKAFNIKGLTHLTKAM
VLLTAISGAFVAGLDAGLVYNSFPKMGDKWIPDDMWTFAPIQKNITENPT
TVQFNHRILGISTVTLTTALWLVTRRMQLPKRANWAINAVVAMAWTQATL
GVTTLLNYVPVPLATAHQSGSLILLSFALWLSHEVRLLKYLPK*

RE54691.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12050-PA 393 GF12050-PA 1..393 1..393 1973 93.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19975-PA 393 GG19975-PA 1..393 1..393 2046 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21698-PA 400 GH21698-PA 1..400 1..393 1614 74.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3803-PA 393 CG3803-PA 1..393 1..393 2038 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20711-PA 397 GI20711-PA 1..397 1..393 1592 74.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10912-PA 395 GL10912-PA 1..395 1..393 1821 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17696-PA 395 GA17696-PA 1..395 1..393 1805 84.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15488-PA 393 GM15488-PA 1..393 1..393 2037 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24990-PA 392 GD24990-PA 1..392 1..393 2036 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20450-PA 395 GJ20450-PA 1..395 1..393 1590 74.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15851-PA 392 GK15851-PA 1..392 1..393 1674 78.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11508-PA 393 GE11508-PA 1..393 1..393 2037 97.5 Plus

RE54691.hyp Sequence

Translation from 101 to 1282

> RE54691.hyp
MLRLLQKRTNLIKLVVPGPRLHQTIAQTAIKEIPVIKPISTPKSDKTVGR
WFLGVSGMVFVAVGLGGVTRLTESGLSMVTWKLTGERMPRTQEEWVQEFN
LYQQYPEYKLKNVNMTVEEFKFIFMMEYMHRMWGRAIGGFFLLPAVYFWR
KGYFCAKTKKSVLLLGTLIGLQGLMGWYMVKSGLEDRFQDPNDVPRVSQY
RLASHLAAAFVLYSLSLSKAMSLLIPTNTFVIQAKKAFNIKGLTHLTKAM
VLLTAISGAFVAGLDAGLVYNSFPKMGDKWIPDDMWTFAPIQKNITENPT
TVQFNHRILGISTVTLTTALWLVTRRMQLPKRANWAINAVVAMAWTQATL
GVTTLLNYVPVPLATAHQSGSLILLSFALWLSHEVRLLKYLPK*

RE54691.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3803-PA 393 CG3803-PA 1..393 1..393 2038 100 Plus