Clone RE54695 Report

Search the DGRC for RE54695

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:546
Well:95
Vector:pFlc-1
Associated Gene/TranscriptCG15594-RA
Protein status:RE54695.pep: wuzgold
Preliminary Size:972
Sequenced Size:3277

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15594 2001-12-14 Blastp of sequenced clone
CG15594 2002-01-01 Sim4 clustering to Release 2
CG15594 2003-01-01 Sim4 clustering to Release 3
CG15594 2008-04-29 Release 5.5 accounting
CG15594 2008-08-15 Release 5.9 accounting
CG15594 2008-12-18 5.12 accounting

Clone Sequence Records

RE54695.complete Sequence

3277 bp (3277 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071471

> RE54695.complete
ACAGTTCAATTCTTGACGGCGTGCGGAGTGCGTGTGTGAAGTGGCAAGCC
CAGCCGAAGGATCCGCAGGAAAATTGAATTAACAATGTGGCAGCGACAGG
TGTTGGTGCTCGTCATTTGCGGGCTCATAACAATGGAGGTGGCGAGGTGC
AGCGCCAGCCGCTTTAATGGCGCCACTTCCGCCGGCAACCAGAACCCGCA
GCTAAAGCTGGAGATGAATGCTTGGCAGCCATTCACCCAGCACAACAATT
GGCTCATCCTCCAGGCGACAGCACCCAGTTCCATGCAGCAGCCGGAGCGG
GTGGAGATCCGAGAAAGGCGAAAGGAACCGGAACGACTTCCTGTCAATTT
CTACGCCTACAACCATCGCTATAACGAGAGCTCCCCAACGCCGGTCGGAA
ATTACAAACCGAATCCTCCCATCGATCCATCCAGCTATGTTCTGGCCATC
AGCCAGCAGATGCGGCGGGGCCAACTCCTTCGCCAGCTGGCAAAAGCGGA
GGATGCCGAGCCGGAAGTTCACAAGGTGGCTGCGACTTTAACCCACCCGG
TTAATGGTGATGACGATAATAATCAAGATGATGAAAACAGAATCCTTCCC
GGGGGACCAGAGGATAGCGAACAGGGGTCACTTCGGGGTGTTGAATCCTA
CTTGGCGCCCTTTGAACGAGCCCTGGTGAAAGTGCGCAACTTCTGCGACG
CCCTGAGAAGCGTGATTAGCGACGAGGCAGGTGGGTAAATTTAATGAAAA
CTTTATTAAATGTGGTCTAAACCCAGGAACAGTACATGAATTAAAGCGAA
TTTTCATTCCAAAAGTGTAGTGCGCAACAACATGAATATTAACTAAACCA
AACTAAAATTGTTTTCCTAACGACTTCAAATAGTAAATAAACAGCTACCG
AAACCTTAAAGGAATCTTGCACTTCCAAATTTATTCCTGGCTTTTCAGAT
GAGTTTCCAATTTTAAAAACTATTTTAAAAATTTCACTATTTTGAAAAAA
GGGGGGTATAATATAGCCCTATCTGAAGGTTTTCAGCTTCATAAATATTC
CAGAACAATAGTTGTATGGTTAGAAAAAACTGGACAAGCAACTGCGTTTA
GCTTCAATAACCATATACAATATTTTAGAAAGTATGCACTAAAATATTTC
AATATTATACAACTTAACGGGTTTTAAGTGCATTACTCATTATACTTGCT
ATACTTATTAATTGACTAAGTATAGGAGTTTTAAATTCAATGATTCTTGT
TTATTTTCCAATCCAACCCATGCGGTCATGCAAGTGACAAGCGACCATAA
CCTCGGGGCGGCTGTGACTGACCATCTAATTACGTGGCTAACTATTGTTT
CCGCTCACCCAATCGCAGATGAGACGGGCACAAATAAATTGGATGCCATC
GCAAGAGAAGGAGCAGCAGCAGCAGCCGCAGACCCACCAGGTGCAACTTC
AAAGGAGCTCCGGGTTCAAGGTCGCTTTCAACGCCTGGCATCTGCGGAAT
CCGAGGGCCGCAAGCTCAAGAAACTGAAGAAGAAGATCCAGAAGCTGTTT
TTCCCCCTACTGATTGCCTACAAGCTCAAGTTCCTCACCCTCATCCCGGT
CCTAATCGGCGGACTCACGCTGCTCGTGGGCACCACGGGCCTGGCCGGCT
TTTTCTTCGCTCTCTTTACGGCTGTAATGAGCCTGAAGAGCTCCGGAGGT
GGTGGCCACTCCAGCAAGTCCCTCGTCTTGAAGAAGCTCTGATGAGTGGC
GCCTTAAAACCCAATCAGAATACCTATTTGCCTAGAGTTGGCCCACTGCT
CGGCCAGCATTGATTTATCCGGTCGGTCGGTGGCTATAAACAAGTGACGT
CGCCGACTTTCAGCGATAACAACGACGCGCCCGCAAATGAAATGAAGTAT
GTAAATAACAGCATTGTCATCCTAAAGCGAATTTTAAATACTCTGTCTTA
AATACTGGTACCTTAGACGCAATCTTTAATATATATATTAACTATTAGCA
GCTCCATGAGAAATTCGAGCTTTACGAAAACTAAAATTTCTTTTTTAGCC
TTCTAATTTTTGGATACATTTTTCTTACGTTAAACATAACACGGTTTGGT
TTAAGGTTTTTCTCTTCATAAAGTCAAATTATTAAATATTTTGCATAGAT
GGGCTCTTAATTATAAGTATATATTTATCTTGAAAAAATGATCTTAAAAA
AAAACGTCTTTAATTATTTTTTACTAAGCAATGAGAACTATATTCTTCCT
AAATTTTTACTATTTCGATTCACTCGCCTATTTATAAATTAATATGAAAA
AATTGTTATAAGATTATATATTTCTAAGTTATTTTTTATAATATTCAGGA
CGTGCTTACCGTTAAATTATTATCATTTAAGTTCAGTGCAAAGTCTAAAA
ATAAATTTCAAATTAATTGTATGTGTACCCATGCTATTAAACATCAGGTT
CATTCCATCTAGAACCCTTAAAGAAAGACGCATTAAACGGGGTTTCCAAA
TTCCCAATAATATCCGTGCAGCCTAGTGTAACTTTAAGCAGCAACCGGAT
GCCAAATAAAAGTACCGCTGACACTCGAGCTGCGATACATTCCGCAGACA
CTTTGCAGTTGGTAAGTCAGGGTTTTGGGCATGAAAAGTGACGACAGCAA
ACGCGTTAACGAATGTCGACTGCTGACTGCGCTTAGTTCCGAGACACGCG
CTTGCATTTGAATGTCTTTGGACGCCCTCTGAATATATAGAGTCTATACT
CGTATTGGAGTGTGTGCGACAGGGCCAGAGTTACACATGTGCGGGCCACC
CAGATAAGTCCATTTGTCTCGTCTGGGCCACGCCTAATTCAGTTTGGGCG
TTATTCAATTTCCCGGCCAACCTGTACTTCCATCTAGGCAACTTGTGTAA
CTTGTGTAATTGCAGAAGCTGTATTCGCTGCCACCCTAATATTGGTGAAA
TTTAATTAATCCTATTACATTACATTATATACATTGCAGACCATCAGCCA
GCGGGCGTTGTCGGAAATTTACATAAAGACGGGCTCAAGGAAAGCCTTTA
AATGGAATCCAAAATATTCTCAAGGCCTTCAATGTTAATGGCCATGTTAT
TTATGAATTTTTAATATAATTTTCATTGAGTCTGCTCTGGACACACAAAT
TTGATTGAATTTTGCGGCATCGGTAGGTTAATTTTAAATCGAAATATTAA
CATTAATTAATAAGGTAAACGATGTGTTTTTAAGTTTAGATAAATATAGA
ATTCCAAAAATAAAAAAAAAAAAAAAA

RE54695.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15594-RA 3263 CG15594-RA 1..3263 1..3263 16300 99.9 Plus
CG15594.a 1621 CG15594.a 874..1621 1365..2112 3740 100 Plus
CG15594.a 1621 CG15594.a 148..877 1..730 3650 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2113405..2116665 1..3261 16275 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6287735..6290997 1..3263 16300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6028566..6031828 1..3263 16300 99.9 Plus
Blast to na_te.dros performed 2019-03-16 21:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 5831..6234 739..1135 156 53.4 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 10152..10289 2172..2032 148 59.2 Minus
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2337..2439 3161..3261 131 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2284..2387 1347..1452 120 58.5 Plus

RE54695.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:18:07 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2113405..2115682 1..2278 99 == Plus
chr3R 2115750..2116665 2346..3261 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:37 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
CG15594-RA 1..654 85..738 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:17 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
CG15594-RA 1..654 85..738 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 17:36:22 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:35:32 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
CG15594-RA 1..654 85..738 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 16:13:12 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:41:30 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
CG15594-RA 1..3261 1..3261 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:17 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
CG15594-RA 1..3261 1..3261 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:22 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
CG15594-RB 3..732 1..730 100 == Plus
CG15594-RB 733..1454 1369..2090 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:35:32 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
CG15594-RA 1..3261 1..3261 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:12 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
CG15594-RB 3..732 1..730 100 == Plus
CG15594-RB 733..1454 1369..2090 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:07 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6287735..6290995 1..3261 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:07 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6287735..6290995 1..3261 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:07 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6287735..6290995 1..3261 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:22 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2113457..2116717 1..3261 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:12:48 Download gff for RE54695.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6028566..6031826 1..3261 99   Plus

RE54695.hyp Sequence

Translation from 84 to 737

> RE54695.hyp
MWQRQVLVLVICGLITMEVARCSASRFNGATSAGNQNPQLKLEMNAWQPF
TQHNNWLILQATAPSSMQQPERVEIRERRKEPERLPVNFYAYNHRYNESS
PTPVGNYKPNPPIDPSSYVLAISQQMRRGQLLRQLAKAEDAEPEVHKVAA
TLTHPVNGDDDNNQDDENRILPGGPEDSEQGSLRGVESYLAPFERALVKV
RNFCDALRSVISDEAGG*

RE54695.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15594-PB 323 CG15594-PB 1..199 17..215 1047 100 Plus

RE54695.pep Sequence

Translation from 84 to 737

> RE54695.pep
MWQRQVLVLVICGLITMEVARCSASRFNGATSAGNQNPQLKLEMNAWQPF
TQHNNWLILQATAPSSMQQPERVEIRERRKEPERLPVNFYAYNHRYNESS
PTPVGNYKPNPPIDPSSYVLAISQQMRRGQLLRQLAKAEDAEPEVHKVAA
TLTHPVNGDDDNNQDDENRILPGGPEDSEQGSLRGVESYLAPFERALVKV
RNFCDALRSVISDEAGG*

RE54695.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16384-PA 313 GF16384-PA 1..199 17..214 609 62.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13192-PA 340 GG13192-PA 1..219 1..217 919 84.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14028-PA 349 GH14028-PA 1..221 1..212 312 39.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15594-PB 323 CG15594-PB 1..199 17..215 1047 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24401-PA 365 GI24401-PA 1..221 1..216 280 37.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24064-PA 387 GL24064-PA 1..246 1..213 397 45.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13836-PA 392 GA13836-PA 1..251 1..213 395 46 Plus
Dpse\GA13836-PC 261 GA13836-PC 1..236 1..213 392 48.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10873-PA 336 GM10873-PA 1..214 1..215 969 92.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19855-PA 336 GD19855-PA 1..214 1..215 982 93 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14259-PA 321 GJ14259-PA 1..199 1..214 303 40.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13042-PA 401 GK13042-PA 17..272 26..215 340 39.5 Plus
Dwil\GK17728-PA 210 GK17728-PA 4..207 59..209 208 36.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10196-PA 325 GE10196-PA 1..198 17..213 799 82.4 Plus