RE54695.complete Sequence
3277 bp (3277 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071471
> RE54695.complete
ACAGTTCAATTCTTGACGGCGTGCGGAGTGCGTGTGTGAAGTGGCAAGCC
CAGCCGAAGGATCCGCAGGAAAATTGAATTAACAATGTGGCAGCGACAGG
TGTTGGTGCTCGTCATTTGCGGGCTCATAACAATGGAGGTGGCGAGGTGC
AGCGCCAGCCGCTTTAATGGCGCCACTTCCGCCGGCAACCAGAACCCGCA
GCTAAAGCTGGAGATGAATGCTTGGCAGCCATTCACCCAGCACAACAATT
GGCTCATCCTCCAGGCGACAGCACCCAGTTCCATGCAGCAGCCGGAGCGG
GTGGAGATCCGAGAAAGGCGAAAGGAACCGGAACGACTTCCTGTCAATTT
CTACGCCTACAACCATCGCTATAACGAGAGCTCCCCAACGCCGGTCGGAA
ATTACAAACCGAATCCTCCCATCGATCCATCCAGCTATGTTCTGGCCATC
AGCCAGCAGATGCGGCGGGGCCAACTCCTTCGCCAGCTGGCAAAAGCGGA
GGATGCCGAGCCGGAAGTTCACAAGGTGGCTGCGACTTTAACCCACCCGG
TTAATGGTGATGACGATAATAATCAAGATGATGAAAACAGAATCCTTCCC
GGGGGACCAGAGGATAGCGAACAGGGGTCACTTCGGGGTGTTGAATCCTA
CTTGGCGCCCTTTGAACGAGCCCTGGTGAAAGTGCGCAACTTCTGCGACG
CCCTGAGAAGCGTGATTAGCGACGAGGCAGGTGGGTAAATTTAATGAAAA
CTTTATTAAATGTGGTCTAAACCCAGGAACAGTACATGAATTAAAGCGAA
TTTTCATTCCAAAAGTGTAGTGCGCAACAACATGAATATTAACTAAACCA
AACTAAAATTGTTTTCCTAACGACTTCAAATAGTAAATAAACAGCTACCG
AAACCTTAAAGGAATCTTGCACTTCCAAATTTATTCCTGGCTTTTCAGAT
GAGTTTCCAATTTTAAAAACTATTTTAAAAATTTCACTATTTTGAAAAAA
GGGGGGTATAATATAGCCCTATCTGAAGGTTTTCAGCTTCATAAATATTC
CAGAACAATAGTTGTATGGTTAGAAAAAACTGGACAAGCAACTGCGTTTA
GCTTCAATAACCATATACAATATTTTAGAAAGTATGCACTAAAATATTTC
AATATTATACAACTTAACGGGTTTTAAGTGCATTACTCATTATACTTGCT
ATACTTATTAATTGACTAAGTATAGGAGTTTTAAATTCAATGATTCTTGT
TTATTTTCCAATCCAACCCATGCGGTCATGCAAGTGACAAGCGACCATAA
CCTCGGGGCGGCTGTGACTGACCATCTAATTACGTGGCTAACTATTGTTT
CCGCTCACCCAATCGCAGATGAGACGGGCACAAATAAATTGGATGCCATC
GCAAGAGAAGGAGCAGCAGCAGCAGCCGCAGACCCACCAGGTGCAACTTC
AAAGGAGCTCCGGGTTCAAGGTCGCTTTCAACGCCTGGCATCTGCGGAAT
CCGAGGGCCGCAAGCTCAAGAAACTGAAGAAGAAGATCCAGAAGCTGTTT
TTCCCCCTACTGATTGCCTACAAGCTCAAGTTCCTCACCCTCATCCCGGT
CCTAATCGGCGGACTCACGCTGCTCGTGGGCACCACGGGCCTGGCCGGCT
TTTTCTTCGCTCTCTTTACGGCTGTAATGAGCCTGAAGAGCTCCGGAGGT
GGTGGCCACTCCAGCAAGTCCCTCGTCTTGAAGAAGCTCTGATGAGTGGC
GCCTTAAAACCCAATCAGAATACCTATTTGCCTAGAGTTGGCCCACTGCT
CGGCCAGCATTGATTTATCCGGTCGGTCGGTGGCTATAAACAAGTGACGT
CGCCGACTTTCAGCGATAACAACGACGCGCCCGCAAATGAAATGAAGTAT
GTAAATAACAGCATTGTCATCCTAAAGCGAATTTTAAATACTCTGTCTTA
AATACTGGTACCTTAGACGCAATCTTTAATATATATATTAACTATTAGCA
GCTCCATGAGAAATTCGAGCTTTACGAAAACTAAAATTTCTTTTTTAGCC
TTCTAATTTTTGGATACATTTTTCTTACGTTAAACATAACACGGTTTGGT
TTAAGGTTTTTCTCTTCATAAAGTCAAATTATTAAATATTTTGCATAGAT
GGGCTCTTAATTATAAGTATATATTTATCTTGAAAAAATGATCTTAAAAA
AAAACGTCTTTAATTATTTTTTACTAAGCAATGAGAACTATATTCTTCCT
AAATTTTTACTATTTCGATTCACTCGCCTATTTATAAATTAATATGAAAA
AATTGTTATAAGATTATATATTTCTAAGTTATTTTTTATAATATTCAGGA
CGTGCTTACCGTTAAATTATTATCATTTAAGTTCAGTGCAAAGTCTAAAA
ATAAATTTCAAATTAATTGTATGTGTACCCATGCTATTAAACATCAGGTT
CATTCCATCTAGAACCCTTAAAGAAAGACGCATTAAACGGGGTTTCCAAA
TTCCCAATAATATCCGTGCAGCCTAGTGTAACTTTAAGCAGCAACCGGAT
GCCAAATAAAAGTACCGCTGACACTCGAGCTGCGATACATTCCGCAGACA
CTTTGCAGTTGGTAAGTCAGGGTTTTGGGCATGAAAAGTGACGACAGCAA
ACGCGTTAACGAATGTCGACTGCTGACTGCGCTTAGTTCCGAGACACGCG
CTTGCATTTGAATGTCTTTGGACGCCCTCTGAATATATAGAGTCTATACT
CGTATTGGAGTGTGTGCGACAGGGCCAGAGTTACACATGTGCGGGCCACC
CAGATAAGTCCATTTGTCTCGTCTGGGCCACGCCTAATTCAGTTTGGGCG
TTATTCAATTTCCCGGCCAACCTGTACTTCCATCTAGGCAACTTGTGTAA
CTTGTGTAATTGCAGAAGCTGTATTCGCTGCCACCCTAATATTGGTGAAA
TTTAATTAATCCTATTACATTACATTATATACATTGCAGACCATCAGCCA
GCGGGCGTTGTCGGAAATTTACATAAAGACGGGCTCAAGGAAAGCCTTTA
AATGGAATCCAAAATATTCTCAAGGCCTTCAATGTTAATGGCCATGTTAT
TTATGAATTTTTAATATAATTTTCATTGAGTCTGCTCTGGACACACAAAT
TTGATTGAATTTTGCGGCATCGGTAGGTTAATTTTAAATCGAAATATTAA
CATTAATTAATAAGGTAAACGATGTGTTTTTAAGTTTAGATAAATATAGA
ATTCCAAAAATAAAAAAAAAAAAAAAA
RE54695.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15594-RA | 3263 | CG15594-RA | 1..3263 | 1..3263 | 16300 | 99.9 | Plus |
CG15594.a | 1621 | CG15594.a | 874..1621 | 1365..2112 | 3740 | 100 | Plus |
CG15594.a | 1621 | CG15594.a | 148..877 | 1..730 | 3650 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 2113405..2116665 | 1..3261 | 16275 | 99.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6287735..6290997 | 1..3263 | 16300 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 6028566..6031828 | 1..3263 | 16300 | 99.9 | Plus |
Blast to na_te.dros performed 2019-03-16 21:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 5831..6234 | 739..1135 | 156 | 53.4 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10152..10289 | 2172..2032 | 148 | 59.2 | Minus |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2337..2439 | 3161..3261 | 131 | 63.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2284..2387 | 1347..1452 | 120 | 58.5 | Plus |
RE54695.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:18:07 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 2113405..2115682 | 1..2278 | 99 | == | Plus |
chr3R | 2115750..2116665 | 2346..3261 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:37 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15594-RA | 1..654 | 85..738 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:17 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15594-RA | 1..654 | 85..738 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 17:36:22 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:35:32 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15594-RA | 1..654 | 85..738 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 16:13:12 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:41:30 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15594-RA | 1..3261 | 1..3261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:17 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15594-RA | 1..3261 | 1..3261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:22 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15594-RB | 3..732 | 1..730 | 100 | == | Plus |
CG15594-RB | 733..1454 | 1369..2090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:35:32 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15594-RA | 1..3261 | 1..3261 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:12 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15594-RB | 3..732 | 1..730 | 100 | == | Plus |
CG15594-RB | 733..1454 | 1369..2090 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:07 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6287735..6290995 | 1..3261 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:07 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6287735..6290995 | 1..3261 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:07 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6287735..6290995 | 1..3261 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:22 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2113457..2116717 | 1..3261 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:12:48 Download gff for
RE54695.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6028566..6031826 | 1..3261 | 99 | | Plus |
RE54695.hyp Sequence
Translation from 84 to 737
> RE54695.hyp
MWQRQVLVLVICGLITMEVARCSASRFNGATSAGNQNPQLKLEMNAWQPF
TQHNNWLILQATAPSSMQQPERVEIRERRKEPERLPVNFYAYNHRYNESS
PTPVGNYKPNPPIDPSSYVLAISQQMRRGQLLRQLAKAEDAEPEVHKVAA
TLTHPVNGDDDNNQDDENRILPGGPEDSEQGSLRGVESYLAPFERALVKV
RNFCDALRSVISDEAGG*
RE54695.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15594-PB | 323 | CG15594-PB | 1..199 | 17..215 | 1047 | 100 | Plus |
RE54695.pep Sequence
Translation from 84 to 737
> RE54695.pep
MWQRQVLVLVICGLITMEVARCSASRFNGATSAGNQNPQLKLEMNAWQPF
TQHNNWLILQATAPSSMQQPERVEIRERRKEPERLPVNFYAYNHRYNESS
PTPVGNYKPNPPIDPSSYVLAISQQMRRGQLLRQLAKAEDAEPEVHKVAA
TLTHPVNGDDDNNQDDENRILPGGPEDSEQGSLRGVESYLAPFERALVKV
RNFCDALRSVISDEAGG*
RE54695.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF16384-PA | 313 | GF16384-PA | 1..199 | 17..214 | 609 | 62.9 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13192-PA | 340 | GG13192-PA | 1..219 | 1..217 | 919 | 84.9 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH14028-PA | 349 | GH14028-PA | 1..221 | 1..212 | 312 | 39.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15594-PB | 323 | CG15594-PB | 1..199 | 17..215 | 1047 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI24401-PA | 365 | GI24401-PA | 1..221 | 1..216 | 280 | 37.2 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL24064-PA | 387 | GL24064-PA | 1..246 | 1..213 | 397 | 45.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA13836-PA | 392 | GA13836-PA | 1..251 | 1..213 | 395 | 46 | Plus |
Dpse\GA13836-PC | 261 | GA13836-PC | 1..236 | 1..213 | 392 | 48.3 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10873-PA | 336 | GM10873-PA | 1..214 | 1..215 | 969 | 92.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD19855-PA | 336 | GD19855-PA | 1..214 | 1..215 | 982 | 93 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ14259-PA | 321 | GJ14259-PA | 1..199 | 1..214 | 303 | 40.1 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK13042-PA | 401 | GK13042-PA | 17..272 | 26..215 | 340 | 39.5 | Plus |
Dwil\GK17728-PA | 210 | GK17728-PA | 4..207 | 59..209 | 208 | 36.9 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE10196-PA | 325 | GE10196-PA | 1..198 | 17..213 | 799 | 82.4 | Plus |