BDGP Sequence Production Resources |
Search the DGRC for RE54776
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 547 |
Well: | 76 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4596-RA |
Protein status: | RE54776.pep: gold |
Preliminary Size: | 1278 |
Sequenced Size: | 2371 |
Gene | Date | Evidence |
---|---|---|
CG4596 | 2001-12-14 | Blastp of sequenced clone |
CG4596 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4596 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4596 | 2008-04-29 | Release 5.5 accounting |
CG4596 | 2008-08-15 | Release 5.9 accounting |
CG4596 | 2008-12-18 | 5.12 accounting |
2371 bp (2371 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071472
> RE54776.complete AATAACAACACAGCCGCAAAGCGACAAAGGCCGGAAGTGCACTTTTTGCA TTACTGGGCGTTAAGTAACGTCACGGGGAACGAAAAAATTTGTCTGCTCC CAAAGATGGTGATGTAGTTTTTTGCGCCAGGACCAAGTGGAAAATTCGAA AAATGGTGGGAAAGGGCTCGAGCGGCCTGGGCGGAGACACCAGTACGGGC AGTAAGGAACGCCCTGTTTTCATTCCGCCCCGGAAACGTCAACAAACCAA ATCGGAGGCCAAGAAGCAGAACTATGTGGATCACATCGTCAGTGTGCAGC AAAATCGACCCAAGTTGTCGCCCTCCAATCCGGGACTTGAAGAGGAGCTC CGCAAGTCCAAGCTGATCATCAAGAACAAGCAGCCGCTGCCGCAGCTGCC GGGAGAGCTGGGTGTGCCCAGTGCCCACGACACCCTGGCTAGCACCCACT CGGCCAGCTCCACGCAGCACAGCCAGAAGTCAGCCAGATCGAACAGTAAT CTCAACGAGCTGCAGAACTTCGAGTCCATATCGCAGGGCACCAAGTCGAC GTCGCAGCGGCACGAGAGCAGTACGGTGACGCCCAGCAGCTGTTGCTATT CGGAGAGCAGCCTGGACGCCAAGTTGAGCAAGTCGCAGGACTGCCTGAGC AACCGGTCGTCCTCCAAGAAGCGGGTCAACATCCGTACAAGCGATCTGCC CGGCCAGGGGCGCAATCAGCGCTCCTCACCGGAGATAGCCAACTACGAAG ATCTGGAGTCCGGCGAAACGAGTGTGCTGAACAACTACGACCAGAGTCTA GAGCGGGGCTATCAGGCGCGCAAGGAGGGCGGCGGCAACTACCTGACCAT GACGGGCACCATTAAGCGGGGTCGCAAGAAGGGCCAGTCCGTGGACCTAC AGATAAACATCAGTCGCGAGGAGCTGGAGCAGCTGAACGCCCATGCGATG GCCAGCGACACACAGAAGGGTGGCAATTTGTGCTGCACCTGCAGCTGTGG CACCGGCCTCCACATCCTGCTCATCTCGCTCTTTTGCCTGCCGTTTGTGA CCGTCGTTTCGGCGGTATACTCCTTCTACATTGGAACGCTCACCTGGTAC AATATGTTCAACTATTACTGCGAGGAGAGGACGTACCTGCACAAGATCCT GGTGACGCCGCTGCTGTTCGTGATCTATCCGCTGGCCATCGTGCTGTGCA CCTTCGGACTGGGCATCTACTCGGGATTGCGGCAGCTGAGTCTGCAGTAC AGCAGTTGGGTGAACGACATCACGGATATCGAGAAGGGATTCTACGGCTG GTTGTGCGGATTCCTTCGCATGCCCGACTGCAGTCCCTACGAGGTCGTCA TCCTGACCGACATTTGTGTTGCGCCGCAGGATCCCCAGCGGCTGCACATC AACAAACCGCGCCAGGAACTATCCATGTAGGATGTGAGAATGTGAGGTGT TCCTGGTTCCAGTTTCGTTTCGACCATAAGTGTGATATAAAAAACGTAAA TTACATACGCAGATCAACACATTAAGTTTCCTTTGGCCAAATTTGTTCCT TTCAACTTGACATGATCGCGTGTCTCTGCAATTGCAGCTTTAGTGAACGG AAATACAATATATTATATATATAGATATCAACGCCACAACATACATAATC CAAGCCCTAGAAAGTCTTAAGTTACTAGAGATCTAACACTCGCACAGCGT CTATAAAGCAAGGAAAACTTCTCAATAGTTTGGTAGTCCGAAACTGAAAT AATCTTGCAAGTGTCAGTCAAAAGTAGCAATTGCTCAATAAGTTAGAAGT TCAAATTCATTTTTTGTCTGAACAGAAATGATGGGGTAACCCCACTTAAC CAAATCATCGTAATTTCGAAAATAGTTTACCGCATTAGCTGCTTGCTTAT CTCAAATCCATCCAATATAGTTTATGACAATTTGCAAGGTTATCAAAACA AAAAAATACAGTAAACTGTTGTAGATGGGCACTTGCCTACGAACTTGAAA CTCAGCTTTCCTTTCCTATAACTCAAAGCCAAATTTAAAACTGTTTACGG AACGTAATAGCATTTACAGAATATGATGCATTTATCTTCAAAATGAACTA AAACCAAATAAAACAGCCAACTTAATGCGCAGTTGACGTGATGGAAACTT TTTCTTAGTTTTAAACAAACATTTTTTATTTCTACGTCAATAAAAAAAAA CGCAGCAAAGCCACACGGACATTTATACACATACCTATATAAGCAAACGT TTTTAAAATAGAAATTCTATATGTTAAGAACCCGAATATCAAACACTTAT TGAAATGAATATATTAGCCAGAGAAATAAAGCCAATAAAATCGTATAGCA AACACAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6698577..6698875 | 1..299 | 99 | -> | Plus |
chr3R | 6699064..6701119 | 300..2355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4596-RA | 1..1278 | 153..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4596-RA | 1..1278 | 153..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4596-RA | 1..1278 | 153..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4596-RA | 1..1278 | 153..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4596-RA | 1..1278 | 153..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4596-RA | 1..2355 | 1..2355 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4596-RA | 35..2389 | 1..2355 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4596-RA | 3..2357 | 1..2355 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4596-RA | 1..2355 | 1..2355 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4596-RA | 3..2357 | 1..2355 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10873040..10873338 | 1..299 | 99 | -> | Plus |
3R | 10873527..10875582 | 300..2355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10873040..10873338 | 1..299 | 99 | -> | Plus |
3R | 10873527..10875582 | 300..2355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10873040..10873338 | 1..299 | 99 | -> | Plus |
3R | 10873527..10875582 | 300..2355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6698762..6699060 | 1..299 | 99 | -> | Plus |
arm_3R | 6699249..6701304 | 300..2355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10613871..10614169 | 1..299 | 99 | -> | Plus |
3R | 10614358..10616413 | 300..2355 | 100 | Plus |
Translation from 152 to 1429
> RE54776.hyp MVGKGSSGLGGDTSTGSKERPVFIPPRKRQQTKSEAKKQNYVDHIVSVQQ NRPKLSPSNPGLEEELRKSKLIIKNKQPLPQLPGELGVPSAHDTLASTHS ASSTQHSQKSARSNSNLNELQNFESISQGTKSTSQRHESSTVTPSSCCYS ESSLDAKLSKSQDCLSNRSSSKKRVNIRTSDLPGQGRNQRSSPEIANYED LESGETSVLNNYDQSLERGYQARKEGGGNYLTMTGTIKRGRKKGQSVDLQ INISREELEQLNAHAMASDTQKGGNLCCTCSCGTGLHILLISLFCLPFVT VVSAVYSFYIGTLTWYNMFNYYCEERTYLHKILVTPLLFVIYPLAIVLCT FGLGIYSGLRQLSLQYSSWVNDITDIEKGFYGWLCGFLRMPDCSPYEVVI LTDICVAPQDPQRLHINKPRQELSM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4596-PA | 425 | CG4596-PA | 1..425 | 1..425 | 2221 | 100 | Plus |
Translation from 152 to 1429
> RE54776.pep MVGKGSSGLGGDTSTGSKERPVFIPPRKRQQTKSEAKKQNYVDHIVSVQQ NRPKLSPSNPGLEEELRKSKLIIKNKQPLPQLPGELGVPSAHDTLASTHS ASSTQHSQKSARSNSNLNELQNFESISQGTKSTSQRHESSTVTPSSCCYS ESSLDAKLSKSQDCLSNRSSSKKRVNIRTSDLPGQGRNQRSSPEIANYED LESGETSVLNNYDQSLERGYQARKEGGGNYLTMTGTIKRGRKKGQSVDLQ INISREELEQLNAHAMASDTQKGGNLCCTCSCGTGLHILLISLFCLPFVT VVSAVYSFYIGTLTWYNMFNYYCEERTYLHKILVTPLLFVIYPLAIVLCT FGLGIYSGLRQLSLQYSSWVNDITDIEKGFYGWLCGFLRMPDCSPYEVVI LTDICVAPQDPQRLHINKPRQELSM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18840-PA | 431 | GF18840-PA | 1..422 | 1..425 | 2112 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17803-PA | 424 | GG17803-PA | 1..424 | 1..425 | 2240 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18863-PA | 420 | GH18863-PA | 1..420 | 1..425 | 1896 | 84.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4596-PA | 425 | CG4596-PA | 1..425 | 1..425 | 2221 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22933-PA | 419 | GI22933-PA | 1..419 | 1..425 | 1893 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12548-PA | 425 | GL12548-PA | 1..425 | 1..425 | 2044 | 89 | Plus |
Dper\GL12568-PA | 167 | GL12568-PA | 1..156 | 266..425 | 770 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18286-PA | 425 | GA18286-PA | 1..425 | 1..425 | 2044 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23910-PA | 425 | GM23910-PA | 1..425 | 1..425 | 2270 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18722-PA | 425 | GD18722-PA | 1..425 | 1..425 | 2270 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23217-PA | 421 | GJ23217-PA | 1..421 | 1..425 | 1909 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13990-PA | 422 | GK13990-PA | 1..422 | 1..425 | 1864 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26060-PA | 425 | GE26060-PA | 1..425 | 1..425 | 2254 | 99.1 | Plus |