Clone RE54776 Report

Search the DGRC for RE54776

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:547
Well:76
Vector:pFlc-1
Associated Gene/TranscriptCG4596-RA
Protein status:RE54776.pep: gold
Preliminary Size:1278
Sequenced Size:2371

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4596 2001-12-14 Blastp of sequenced clone
CG4596 2002-01-01 Sim4 clustering to Release 2
CG4596 2003-01-01 Sim4 clustering to Release 3
CG4596 2008-04-29 Release 5.5 accounting
CG4596 2008-08-15 Release 5.9 accounting
CG4596 2008-12-18 5.12 accounting

Clone Sequence Records

RE54776.complete Sequence

2371 bp (2371 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071472

> RE54776.complete
AATAACAACACAGCCGCAAAGCGACAAAGGCCGGAAGTGCACTTTTTGCA
TTACTGGGCGTTAAGTAACGTCACGGGGAACGAAAAAATTTGTCTGCTCC
CAAAGATGGTGATGTAGTTTTTTGCGCCAGGACCAAGTGGAAAATTCGAA
AAATGGTGGGAAAGGGCTCGAGCGGCCTGGGCGGAGACACCAGTACGGGC
AGTAAGGAACGCCCTGTTTTCATTCCGCCCCGGAAACGTCAACAAACCAA
ATCGGAGGCCAAGAAGCAGAACTATGTGGATCACATCGTCAGTGTGCAGC
AAAATCGACCCAAGTTGTCGCCCTCCAATCCGGGACTTGAAGAGGAGCTC
CGCAAGTCCAAGCTGATCATCAAGAACAAGCAGCCGCTGCCGCAGCTGCC
GGGAGAGCTGGGTGTGCCCAGTGCCCACGACACCCTGGCTAGCACCCACT
CGGCCAGCTCCACGCAGCACAGCCAGAAGTCAGCCAGATCGAACAGTAAT
CTCAACGAGCTGCAGAACTTCGAGTCCATATCGCAGGGCACCAAGTCGAC
GTCGCAGCGGCACGAGAGCAGTACGGTGACGCCCAGCAGCTGTTGCTATT
CGGAGAGCAGCCTGGACGCCAAGTTGAGCAAGTCGCAGGACTGCCTGAGC
AACCGGTCGTCCTCCAAGAAGCGGGTCAACATCCGTACAAGCGATCTGCC
CGGCCAGGGGCGCAATCAGCGCTCCTCACCGGAGATAGCCAACTACGAAG
ATCTGGAGTCCGGCGAAACGAGTGTGCTGAACAACTACGACCAGAGTCTA
GAGCGGGGCTATCAGGCGCGCAAGGAGGGCGGCGGCAACTACCTGACCAT
GACGGGCACCATTAAGCGGGGTCGCAAGAAGGGCCAGTCCGTGGACCTAC
AGATAAACATCAGTCGCGAGGAGCTGGAGCAGCTGAACGCCCATGCGATG
GCCAGCGACACACAGAAGGGTGGCAATTTGTGCTGCACCTGCAGCTGTGG
CACCGGCCTCCACATCCTGCTCATCTCGCTCTTTTGCCTGCCGTTTGTGA
CCGTCGTTTCGGCGGTATACTCCTTCTACATTGGAACGCTCACCTGGTAC
AATATGTTCAACTATTACTGCGAGGAGAGGACGTACCTGCACAAGATCCT
GGTGACGCCGCTGCTGTTCGTGATCTATCCGCTGGCCATCGTGCTGTGCA
CCTTCGGACTGGGCATCTACTCGGGATTGCGGCAGCTGAGTCTGCAGTAC
AGCAGTTGGGTGAACGACATCACGGATATCGAGAAGGGATTCTACGGCTG
GTTGTGCGGATTCCTTCGCATGCCCGACTGCAGTCCCTACGAGGTCGTCA
TCCTGACCGACATTTGTGTTGCGCCGCAGGATCCCCAGCGGCTGCACATC
AACAAACCGCGCCAGGAACTATCCATGTAGGATGTGAGAATGTGAGGTGT
TCCTGGTTCCAGTTTCGTTTCGACCATAAGTGTGATATAAAAAACGTAAA
TTACATACGCAGATCAACACATTAAGTTTCCTTTGGCCAAATTTGTTCCT
TTCAACTTGACATGATCGCGTGTCTCTGCAATTGCAGCTTTAGTGAACGG
AAATACAATATATTATATATATAGATATCAACGCCACAACATACATAATC
CAAGCCCTAGAAAGTCTTAAGTTACTAGAGATCTAACACTCGCACAGCGT
CTATAAAGCAAGGAAAACTTCTCAATAGTTTGGTAGTCCGAAACTGAAAT
AATCTTGCAAGTGTCAGTCAAAAGTAGCAATTGCTCAATAAGTTAGAAGT
TCAAATTCATTTTTTGTCTGAACAGAAATGATGGGGTAACCCCACTTAAC
CAAATCATCGTAATTTCGAAAATAGTTTACCGCATTAGCTGCTTGCTTAT
CTCAAATCCATCCAATATAGTTTATGACAATTTGCAAGGTTATCAAAACA
AAAAAATACAGTAAACTGTTGTAGATGGGCACTTGCCTACGAACTTGAAA
CTCAGCTTTCCTTTCCTATAACTCAAAGCCAAATTTAAAACTGTTTACGG
AACGTAATAGCATTTACAGAATATGATGCATTTATCTTCAAAATGAACTA
AAACCAAATAAAACAGCCAACTTAATGCGCAGTTGACGTGATGGAAACTT
TTTCTTAGTTTTAAACAAACATTTTTTATTTCTACGTCAATAAAAAAAAA
CGCAGCAAAGCCACACGGACATTTATACACATACCTATATAAGCAAACGT
TTTTAAAATAGAAATTCTATATGTTAAGAACCCGAATATCAAACACTTAT
TGAAATGAATATATTAGCCAGAGAAATAAAGCCAATAAAATCGTATAGCA
AACACAAAAAAAAAAAAAAAA

RE54776.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4596-RA 2652 CG4596-RA 291..2647 1..2357 11770 99.9 Plus
CG4596.a 2652 CG4596.a 291..2647 1..2357 11770 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6699059..6701119 295..2355 10305 100 Plus
chr3R 27901430 chr3R 6698577..6698875 1..299 1480 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10873522..10875584 295..2357 10315 100 Plus
3R 32079331 3R 10873040..10873338 1..299 1480 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10614353..10616415 295..2357 10315 100 Plus
3R 31820162 3R 10613871..10614169 1..299 1480 99.6 Plus
Blast to na_te.dros performed 2019-03-16 03:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 1108..1297 2145..2336 200 60.6 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 1181..1368 2143..2337 173 57.9 Plus

RE54776.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:41:24 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6698577..6698875 1..299 99 -> Plus
chr3R 6699064..6701119 300..2355 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:39 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 1..1278 153..1430 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:03 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 1..1278 153..1430 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:47:48 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 1..1278 153..1430 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:13 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 1..1278 153..1430 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:11:10 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 1..1278 153..1430 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:46 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 1..2355 1..2355 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:03 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 35..2389 1..2355 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:47:48 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 3..2357 1..2355 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:14 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 1..2355 1..2355 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:11:10 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 3..2357 1..2355 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:24 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10873040..10873338 1..299 99 -> Plus
3R 10873527..10875582 300..2355 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:24 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10873040..10873338 1..299 99 -> Plus
3R 10873527..10875582 300..2355 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:24 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10873040..10873338 1..299 99 -> Plus
3R 10873527..10875582 300..2355 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:47:48 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6698762..6699060 1..299 99 -> Plus
arm_3R 6699249..6701304 300..2355 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:24 Download gff for RE54776.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10613871..10614169 1..299 99 -> Plus
3R 10614358..10616413 300..2355 100   Plus

RE54776.hyp Sequence

Translation from 152 to 1429

> RE54776.hyp
MVGKGSSGLGGDTSTGSKERPVFIPPRKRQQTKSEAKKQNYVDHIVSVQQ
NRPKLSPSNPGLEEELRKSKLIIKNKQPLPQLPGELGVPSAHDTLASTHS
ASSTQHSQKSARSNSNLNELQNFESISQGTKSTSQRHESSTVTPSSCCYS
ESSLDAKLSKSQDCLSNRSSSKKRVNIRTSDLPGQGRNQRSSPEIANYED
LESGETSVLNNYDQSLERGYQARKEGGGNYLTMTGTIKRGRKKGQSVDLQ
INISREELEQLNAHAMASDTQKGGNLCCTCSCGTGLHILLISLFCLPFVT
VVSAVYSFYIGTLTWYNMFNYYCEERTYLHKILVTPLLFVIYPLAIVLCT
FGLGIYSGLRQLSLQYSSWVNDITDIEKGFYGWLCGFLRMPDCSPYEVVI
LTDICVAPQDPQRLHINKPRQELSM*

RE54776.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4596-PA 425 CG4596-PA 1..425 1..425 2221 100 Plus

RE54776.pep Sequence

Translation from 152 to 1429

> RE54776.pep
MVGKGSSGLGGDTSTGSKERPVFIPPRKRQQTKSEAKKQNYVDHIVSVQQ
NRPKLSPSNPGLEEELRKSKLIIKNKQPLPQLPGELGVPSAHDTLASTHS
ASSTQHSQKSARSNSNLNELQNFESISQGTKSTSQRHESSTVTPSSCCYS
ESSLDAKLSKSQDCLSNRSSSKKRVNIRTSDLPGQGRNQRSSPEIANYED
LESGETSVLNNYDQSLERGYQARKEGGGNYLTMTGTIKRGRKKGQSVDLQ
INISREELEQLNAHAMASDTQKGGNLCCTCSCGTGLHILLISLFCLPFVT
VVSAVYSFYIGTLTWYNMFNYYCEERTYLHKILVTPLLFVIYPLAIVLCT
FGLGIYSGLRQLSLQYSSWVNDITDIEKGFYGWLCGFLRMPDCSPYEVVI
LTDICVAPQDPQRLHINKPRQELSM*

RE54776.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18840-PA 431 GF18840-PA 1..422 1..425 2112 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17803-PA 424 GG17803-PA 1..424 1..425 2240 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18863-PA 420 GH18863-PA 1..420 1..425 1896 84.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4596-PA 425 CG4596-PA 1..425 1..425 2221 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22933-PA 419 GI22933-PA 1..419 1..425 1893 84.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12548-PA 425 GL12548-PA 1..425 1..425 2044 89 Plus
Dper\GL12568-PA 167 GL12568-PA 1..156 266..425 770 85.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18286-PA 425 GA18286-PA 1..425 1..425 2044 89 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23910-PA 425 GM23910-PA 1..425 1..425 2270 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18722-PA 425 GD18722-PA 1..425 1..425 2270 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23217-PA 421 GJ23217-PA 1..421 1..425 1909 85.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13990-PA 422 GK13990-PA 1..422 1..425 1864 84.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26060-PA 425 GE26060-PA 1..425 1..425 2254 99.1 Plus