Clone RE54950 Report

Search the DGRC for RE54950

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:549
Well:50
Vector:pFlc-1
Associated Gene/TranscripteIF-4B-RA
Protein status:RE54950.pep: gold
Preliminary Size:1522
Sequenced Size:1677

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10837 2001-12-14 Blastp of sequenced clone
CG10837 2002-01-01 Sim4 clustering to Release 2
CG10837 2003-01-01 Sim4 clustering to Release 3
eIF-4B 2008-04-29 Release 5.5 accounting
eIF-4B 2008-08-15 Release 5.9 accounting
eIF-4B 2008-12-18 5.12 accounting

Clone Sequence Records

RE54950.complete Sequence

1677 bp (1677 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071474

> RE54950.complete
ATAGGAAAATTGATTTCTCTATTTTTGTGAATTCGGTAAATTATCAAAAT
TAAAGATTGGAAACATTGGTTGAAATGGCGTCCGCAGGAAAGAAGGGCAA
AAAGAATAAAGGAACAGTTATCTCCTTGCAATCATTTCTATGTAATTCTG
ACGCTCCAGTCGGAACAACCCAAGTCTCAAAAAAAATACGAAATTTAGAT
GGCGATGATAGCGATGATGGAAGTGGTACATTGCCGTTGGTTTATCAGCT
TCCAACCGCTCCGAGGGCAAATCGGATATTCGACGATAATTCTATTCCTC
ATAAAGCCCCATTTATTGCTTATATCAATAATTTACCATTTGACGCAAAT
GAAGATGACCTCTACGAGTTCTTTGAAGGTATTAATTTAATATCTCTGAG
ACTACCAAGAGAAGATGGCGAAAATGGTCGTTCCAGAGGCTTTGGCTATG
TGGAGTTGGAAAATCGAGAGGATTTAATTCATGTACTTAGCTTGCCAGAC
CCCTCTATTAAAGGTCGCCGCATTCGCATTGAGCTATCGAATGAAAACGA
CCAGCAAAGCCGCCAAAAAAGTAATAGGCGGTTTGATGGTTTTGGAAATA
ATGGAGATAATAGGGATTCCGGAAATTGGAGGCGAGACAGCCAAAACAAC
GGCAGTAACTTTGGTTATTCTTCCAATTTTGAAAGAAGCTTTAATAGAGA
GAGAAAATCTTTACCAGATAGAGATGATGTGAACACTCCTGGATCTTGGC
GCACGAGCGCAAGGCCGCAATCTATTGATACTTCCCCTACACGCAGAGAA
GTTGAACAAGTATCTGAAAAATATCGCGAAGGTCGAGTCAAAATAGCAGA
CAGATATTCCCGAGAAGAGACATCCAAAGTTGAAGAAGAAAGGCCAAAAT
TGAATTTAAAACCAAGAACTTTACCATTGCCAGATGTAAAGACAATTGAA
TTCGAAAAATGTGACGTTGATGAATTTAATTTGGATAAACAAGGCGGAAC
TTCATCATTAAACGTGTTTGGGTCTGCAAAACCGGTAGATACAGCAGCAA
GGGAGTTGGAGATTGAGCAAAGATTGGCTCTCGCTCGAAAACAGGATAAG
GGGCGCAGAGAACAGGGTTTAAATGAAAAACTTGCCGAGCTCCAGGTGGA
TAAAAATGATAATGAAAGTCTAAGTGCAACAGTTAGTTGGCGCACGAATC
AGGACTACAAGGAAAGCGACAAAATTAATAAGTGTCCAGGTAACTAAAAT
CTAAATATTTGTCTGAATGTAGAAGTGAATTTTATCTGACTTGAGTTTTT
AATCTAATCAAAAAGCATAATAATAATAAATAATCAGAGGAGGAGGAAAT
ATACAACGCCACATAAAATACAACAAATTAACATTTTTCGAAAATGTGGG
AGAAGCCGTAATTTGGCAAATAATCAATAACGTATCTCCTATATATTTGG
TTTTCACCGTGCACCTACTTTTTGGGTGCCGACAAAAAATGCGATGTCTG
TAAATTATACCATTGCTTAAAACCCAAACCACAAAAAATACTGTATGCGG
GCTTACTTATGCGAGAACACGATTTTCAAGCTGGAAATATTTTATTTAAA
AAAAAATCATAATTAACTTGTATTATTCTATTAATAAAATTCGAGTTGCA
CAAAATTAAAGAAAAAAAAAAAAAAAA

RE54950.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4B-RA 1873 eIF-4B-RA 30..1687 1..1658 8290 100 Plus
eIF-4B-RB 1640 eIF-4B-RB 35..1275 1..1241 6205 100 Plus
eIF-4B-RE 1662 eIF-4B-RE 30..1268 1..1239 6195 100 Plus
eIF-4B-RE 1662 eIF-4B-RE 1267..1611 1314..1658 1725 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2RHet 3288813 chr2RHet 2902154..2903727 85..1658 7855 99.9 Plus
chr2RHet 3288813 chr2RHet 2901815..2901902 1..88 440 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27547276..27548849 1658..85 7870 100 Minus
3L 28110227 3L 27856365..27857938 1658..85 7870 100 Minus
3L 28110227 3L 27858190..27858277 88..1 440 100 Minus
3L 28110227 3L 27549101..27549160 88..29 300 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 27849465..27851038 1658..85 7870 100 Minus
3L 28103327 3L 27540376..27541949 1658..85 7870 100 Minus
3L 28103327 3L 27851290..27851377 88..1 440 100 Minus
3L 28103327 3L 27542201..27542260 88..29 300 100 Minus
Blast to na_te.dros performed 2019-03-16 08:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 8118..8193 94..15 130 65 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 824..1013 1206..1394 119 55.9 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1116..1201 1335..1253 116 64.4 Minus

RE54950.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:34:30 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
chr2RHet 2901815..2901901 1..87 100 -> Plus
chr2RHet 2902157..2903653 88..1584 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:43 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RA 1..1173 75..1247 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:22 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RA 1..1173 75..1247 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:55:42 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RA 1..1173 75..1247 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:45 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RA 1..1173 75..1247 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:43:28 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RA 1..1173 75..1247 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:57 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RA 1..1658 1..1661 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:22 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RA 1..1658 1..1661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:42 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RA 1..1651 7..1657 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:45 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RA 1..1658 1..1661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:43:28 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4B-RA 1..1651 7..1657 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:30 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27547273..27548846 88..1661 99 <- Minus
3L 27549102..27549160 29..87 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:30 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27547273..27548846 88..1661 99 <- Minus
3L 27549102..27549160 29..87 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:30 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27547273..27548846 88..1661 99 <- Minus
3L 27549102..27549160 29..87 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:42 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 2901752..2901838 1..87 100 -> Plus
2RHet 2902094..2903664 88..1661 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:26 Download gff for RE54950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 27540373..27541946 88..1661 99 <- Minus
3L 27542202..27542260 29..87 100   Minus

RE54950.pep Sequence

Translation from 74 to 1246

> RE54950.pep
MASAGKKGKKNKGTVISLQSFLCNSDAPVGTTQVSKKIRNLDGDDSDDGS
GTLPLVYQLPTAPRANRIFDDNSIPHKAPFIAYINNLPFDANEDDLYEFF
EGINLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPDPSIKGRRI
RIELSNENDQQSRQKSNRRFDGFGNNGDNRDSGNWRRDSQNNGSNFGYSS
NFERSFNRERKSLPDRDDVNTPGSWRTSARPQSIDTSPTRREVEQVSEKY
REGRVKIADRYSREETSKVEEERPKLNLKPRTLPLPDVKTIEFEKCDVDE
FNLDKQGGTSSLNVFGSAKPVDTAARELEIEQRLALARKQDKGRREQGLN
EKLAELQVDKNDNESLSATVSWRTNQDYKESDKINKCPGN*

RE54950.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10934-PA 387 GG10934-PA 1..309 79..389 1368 90.1 Plus
Dere\GG15497-PA 280 GG15497-PA 76..169 74..173 154 31 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18041-PA 405 GH18041-PA 1..401 1..389 1201 68.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4B-PA 390 CG10837-PA 1..390 1..390 2034 100 Plus
eIF4B-PF 392 CG10837-PF 1..389 1..389 2028 100 Plus
eIF4B-PB 459 CG10837-PB 1..389 1..389 2028 100 Plus
eIF4B-PE 389 CG10837-PE 1..388 1..388 2022 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23629-PA 184 GI23629-PA 2..106 274..386 225 47 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18125-PA 461 GE18125-PA 10..383 14..389 1754 90.7 Plus
Dyak\GE21806-PA 281 GE21806-PA 76..154 74..155 148 32.9 Plus

RE54950.hyp Sequence

Translation from 74 to 1246

> RE54950.hyp
MASAGKKGKKNKGTVISLQSFLCNSDAPVGTTQVSKKIRNLDGDDSDDGS
GTLPLVYQLPTAPRANRIFDDNSIPHKAPFIAYINNLPFDANEDDLYEFF
EGINLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPDPSIKGRRI
RIELSNENDQQSRQKSNRRFDGFGNNGDNRDSGNWRRDSQNNGSNFGYSS
NFERSFNRERKSLPDRDDVNTPGSWRTSARPQSIDTSPTRREVEQVSEKY
REGRVKIADRYSREETSKVEEERPKLNLKPRTLPLPDVKTIEFEKCDVDE
FNLDKQGGTSSLNVFGSAKPVDTAARELEIEQRLALARKQDKGRREQGLN
EKLAELQVDKNDNESLSATVSWRTNQDYKESDKINKCPGN*

RE54950.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4B-PA 390 CG10837-PA 1..390 1..390 2034 100 Plus
eIF-4B-PF 392 CG10837-PF 1..389 1..389 2028 100 Plus
eIF-4B-PB 459 CG10837-PB 1..389 1..389 2028 100 Plus
eIF-4B-PE 389 CG10837-PE 1..388 1..388 2022 100 Plus