Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE54950.complete Sequence
1677 bp (1677 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071474
> RE54950.complete
ATAGGAAAATTGATTTCTCTATTTTTGTGAATTCGGTAAATTATCAAAAT
TAAAGATTGGAAACATTGGTTGAAATGGCGTCCGCAGGAAAGAAGGGCAA
AAAGAATAAAGGAACAGTTATCTCCTTGCAATCATTTCTATGTAATTCTG
ACGCTCCAGTCGGAACAACCCAAGTCTCAAAAAAAATACGAAATTTAGAT
GGCGATGATAGCGATGATGGAAGTGGTACATTGCCGTTGGTTTATCAGCT
TCCAACCGCTCCGAGGGCAAATCGGATATTCGACGATAATTCTATTCCTC
ATAAAGCCCCATTTATTGCTTATATCAATAATTTACCATTTGACGCAAAT
GAAGATGACCTCTACGAGTTCTTTGAAGGTATTAATTTAATATCTCTGAG
ACTACCAAGAGAAGATGGCGAAAATGGTCGTTCCAGAGGCTTTGGCTATG
TGGAGTTGGAAAATCGAGAGGATTTAATTCATGTACTTAGCTTGCCAGAC
CCCTCTATTAAAGGTCGCCGCATTCGCATTGAGCTATCGAATGAAAACGA
CCAGCAAAGCCGCCAAAAAAGTAATAGGCGGTTTGATGGTTTTGGAAATA
ATGGAGATAATAGGGATTCCGGAAATTGGAGGCGAGACAGCCAAAACAAC
GGCAGTAACTTTGGTTATTCTTCCAATTTTGAAAGAAGCTTTAATAGAGA
GAGAAAATCTTTACCAGATAGAGATGATGTGAACACTCCTGGATCTTGGC
GCACGAGCGCAAGGCCGCAATCTATTGATACTTCCCCTACACGCAGAGAA
GTTGAACAAGTATCTGAAAAATATCGCGAAGGTCGAGTCAAAATAGCAGA
CAGATATTCCCGAGAAGAGACATCCAAAGTTGAAGAAGAAAGGCCAAAAT
TGAATTTAAAACCAAGAACTTTACCATTGCCAGATGTAAAGACAATTGAA
TTCGAAAAATGTGACGTTGATGAATTTAATTTGGATAAACAAGGCGGAAC
TTCATCATTAAACGTGTTTGGGTCTGCAAAACCGGTAGATACAGCAGCAA
GGGAGTTGGAGATTGAGCAAAGATTGGCTCTCGCTCGAAAACAGGATAAG
GGGCGCAGAGAACAGGGTTTAAATGAAAAACTTGCCGAGCTCCAGGTGGA
TAAAAATGATAATGAAAGTCTAAGTGCAACAGTTAGTTGGCGCACGAATC
AGGACTACAAGGAAAGCGACAAAATTAATAAGTGTCCAGGTAACTAAAAT
CTAAATATTTGTCTGAATGTAGAAGTGAATTTTATCTGACTTGAGTTTTT
AATCTAATCAAAAAGCATAATAATAATAAATAATCAGAGGAGGAGGAAAT
ATACAACGCCACATAAAATACAACAAATTAACATTTTTCGAAAATGTGGG
AGAAGCCGTAATTTGGCAAATAATCAATAACGTATCTCCTATATATTTGG
TTTTCACCGTGCACCTACTTTTTGGGTGCCGACAAAAAATGCGATGTCTG
TAAATTATACCATTGCTTAAAACCCAAACCACAAAAAATACTGTATGCGG
GCTTACTTATGCGAGAACACGATTTTCAAGCTGGAAATATTTTATTTAAA
AAAAAATCATAATTAACTTGTATTATTCTATTAATAAAATTCGAGTTGCA
CAAAATTAAAGAAAAAAAAAAAAAAAA
RE54950.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4B-RA | 1873 | eIF-4B-RA | 30..1687 | 1..1658 | 8290 | 100 | Plus |
eIF-4B-RB | 1640 | eIF-4B-RB | 35..1275 | 1..1241 | 6205 | 100 | Plus |
eIF-4B-RE | 1662 | eIF-4B-RE | 30..1268 | 1..1239 | 6195 | 100 | Plus |
eIF-4B-RE | 1662 | eIF-4B-RE | 1267..1611 | 1314..1658 | 1725 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2RHet | 3288813 | chr2RHet | 2902154..2903727 | 85..1658 | 7855 | 99.9 | Plus |
chr2RHet | 3288813 | chr2RHet | 2901815..2901902 | 1..88 | 440 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27547276..27548849 | 1658..85 | 7870 | 100 | Minus |
3L | 28110227 | 3L | 27856365..27857938 | 1658..85 | 7870 | 100 | Minus |
3L | 28110227 | 3L | 27858190..27858277 | 88..1 | 440 | 100 | Minus |
3L | 28110227 | 3L | 27549101..27549160 | 88..29 | 300 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 27849465..27851038 | 1658..85 | 7870 | 100 | Minus |
3L | 28103327 | 3L | 27540376..27541949 | 1658..85 | 7870 | 100 | Minus |
3L | 28103327 | 3L | 27851290..27851377 | 88..1 | 440 | 100 | Minus |
3L | 28103327 | 3L | 27542201..27542260 | 88..29 | 300 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 08:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 8118..8193 | 94..15 | 130 | 65 | Minus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 824..1013 | 1206..1394 | 119 | 55.9 | Plus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 1116..1201 | 1335..1253 | 116 | 64.4 | Minus |
RE54950.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:34:30 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2RHet | 2901815..2901901 | 1..87 | 100 | -> | Plus |
chr2RHet | 2902157..2903653 | 88..1584 | 99 | == | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:43 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4B-RA | 1..1173 | 75..1247 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:22 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4B-RA | 1..1173 | 75..1247 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:55:42 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4B-RA | 1..1173 | 75..1247 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:45 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4B-RA | 1..1173 | 75..1247 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:43:28 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4B-RA | 1..1173 | 75..1247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:57 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4B-RA | 1..1658 | 1..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:22 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4B-RA | 1..1658 | 1..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:42 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4B-RA | 1..1651 | 7..1657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:45 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4B-RA | 1..1658 | 1..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:43:28 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4B-RA | 1..1651 | 7..1657 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:30 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27547273..27548846 | 88..1661 | 99 | <- | Minus |
3L | 27549102..27549160 | 29..87 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:30 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27547273..27548846 | 88..1661 | 99 | <- | Minus |
3L | 27549102..27549160 | 29..87 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:30 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27547273..27548846 | 88..1661 | 99 | <- | Minus |
3L | 27549102..27549160 | 29..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:42 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 2901752..2901838 | 1..87 | 100 | -> | Plus |
2RHet | 2902094..2903664 | 88..1661 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:26 Download gff for
RE54950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27540373..27541946 | 88..1661 | 99 | <- | Minus |
3L | 27542202..27542260 | 29..87 | 100 | | Minus |
RE54950.pep Sequence
Translation from 74 to 1246
> RE54950.pep
MASAGKKGKKNKGTVISLQSFLCNSDAPVGTTQVSKKIRNLDGDDSDDGS
GTLPLVYQLPTAPRANRIFDDNSIPHKAPFIAYINNLPFDANEDDLYEFF
EGINLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPDPSIKGRRI
RIELSNENDQQSRQKSNRRFDGFGNNGDNRDSGNWRRDSQNNGSNFGYSS
NFERSFNRERKSLPDRDDVNTPGSWRTSARPQSIDTSPTRREVEQVSEKY
REGRVKIADRYSREETSKVEEERPKLNLKPRTLPLPDVKTIEFEKCDVDE
FNLDKQGGTSSLNVFGSAKPVDTAARELEIEQRLALARKQDKGRREQGLN
EKLAELQVDKNDNESLSATVSWRTNQDYKESDKINKCPGN*
RE54950.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG10934-PA | 387 | GG10934-PA | 1..309 | 79..389 | 1368 | 90.1 | Plus |
Dere\GG15497-PA | 280 | GG15497-PA | 76..169 | 74..173 | 154 | 31 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH18041-PA | 405 | GH18041-PA | 1..401 | 1..389 | 1201 | 68.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4B-PA | 390 | CG10837-PA | 1..390 | 1..390 | 2034 | 100 | Plus |
eIF4B-PF | 392 | CG10837-PF | 1..389 | 1..389 | 2028 | 100 | Plus |
eIF4B-PB | 459 | CG10837-PB | 1..389 | 1..389 | 2028 | 100 | Plus |
eIF4B-PE | 389 | CG10837-PE | 1..388 | 1..388 | 2022 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI23629-PA | 184 | GI23629-PA | 2..106 | 274..386 | 225 | 47 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE18125-PA | 461 | GE18125-PA | 10..383 | 14..389 | 1754 | 90.7 | Plus |
Dyak\GE21806-PA | 281 | GE21806-PA | 76..154 | 74..155 | 148 | 32.9 | Plus |
RE54950.hyp Sequence
Translation from 74 to 1246
> RE54950.hyp
MASAGKKGKKNKGTVISLQSFLCNSDAPVGTTQVSKKIRNLDGDDSDDGS
GTLPLVYQLPTAPRANRIFDDNSIPHKAPFIAYINNLPFDANEDDLYEFF
EGINLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPDPSIKGRRI
RIELSNENDQQSRQKSNRRFDGFGNNGDNRDSGNWRRDSQNNGSNFGYSS
NFERSFNRERKSLPDRDDVNTPGSWRTSARPQSIDTSPTRREVEQVSEKY
REGRVKIADRYSREETSKVEEERPKLNLKPRTLPLPDVKTIEFEKCDVDE
FNLDKQGGTSSLNVFGSAKPVDTAARELEIEQRLALARKQDKGRREQGLN
EKLAELQVDKNDNESLSATVSWRTNQDYKESDKINKCPGN*
RE54950.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4B-PA | 390 | CG10837-PA | 1..390 | 1..390 | 2034 | 100 | Plus |
eIF-4B-PF | 392 | CG10837-PF | 1..389 | 1..389 | 2028 | 100 | Plus |
eIF-4B-PB | 459 | CG10837-PB | 1..389 | 1..389 | 2028 | 100 | Plus |
eIF-4B-PE | 389 | CG10837-PE | 1..388 | 1..388 | 2022 | 100 | Plus |