Clone RE54962 Report

Search the DGRC for RE54962

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:549
Well:62
Vector:pFlc-1
Associated Gene/TranscriptShaw-RB
Protein status:RE54962.pep: gold
Preliminary Size:1497
Sequenced Size:2854

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2822 2001-12-14 Blastp of sequenced clone
CG2822 2002-01-01 Sim4 clustering to Release 2
CG2822 2003-01-01 Sim4 clustering to Release 3
Shaw 2008-04-29 Release 5.5 accounting
Shaw 2008-08-15 Release 5.9 accounting
Shaw 2008-12-18 5.12 accounting

Clone Sequence Records

RE54962.complete Sequence

2854 bp (2854 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071475

> RE54962.complete
AGTTTGTTAAATCGCCTCGAACGGTTCGGAACGCGCGCGCTCGAAGAGAT
CGGACGGCCAACTCCCCGGAAAGAAAGAAAAATAGTGGAAGGAGGCGCCC
CCACAAGGCGAACGAGTGTAGTGTAGTAGTGAAATAGTCCTCGATTTAGT
TTACCCCTTTTCCGCAATTTTCACCAAGCCCGAAACATTGGATTTCCTGT
GATTTTCCGACTTTTCCTGCGACCAGACTCCCCAAAATCCCCAGTATCGG
AACTATGTTTATGGGCAGAGCGCAACGAGGCCGCAGGATGAGAGAATAGC
GGCATGTTGTCCAACTCAGCCCCAACGTATGGTGGTACTAGGTCCTGAGG
CCTGATCCCCATTGGGTGCCGAAGAGTGGATCGAAGTGGTGCCTTGACGG
AGTGGTAGGCATAACTGCATAAATCGTGGGCAAGGACAACGAAAAGCATT
CAGCCATGAATCTGATCAACATGGACTCGGAAAACAGGGTGGTGCTCAAT
GTGGGTGGCATTAGGCACGAAACCTACAAGGCCACGCTGAAGAAGATTCC
GGCTACGCGATTATCGCGATTAACAGAGGCGCTGGCCAACTATGATCCGA
TACTGAATGAGTACTTCTTTGATCGGCATCCGGGCGTCTTCGCACAAGTG
CTCAACTATTACAGAACTGGAAAGCTGCATTATCCCACGGATGTGTGCGG
TCCGCTGTTTGAGGAGGAATTGGAGTTCTGGGGCCTAGACTCGAACCAAG
TGGAGCCCTGCTGTTGGATGACCTACACACAGCATCGCGACACCCAGGAA
ACCCTAGCCGTACTCGATCGTCTCGATCTGGATACGGAAAAACCGTCCGA
AGAGGAATTGGCACGCAAATTCGGCTTCGAGGAGGACTACTACAAAGGCA
CAATATCCTGGTGGCAGGAAATGAAGCCGCGCATTTGGTCCTTGTTCGAT
GAGCCCTACAGTTCCAATGCAGCCAAGACTATTGGCGTGGTTTCGGTGTT
CTTCATCTGCATTTCGATCCTGTCGTTCTGCCTGAAGACCCATCCCGATA
TGCGGGTACCCATCGTCCGGAACATTACAGTGAAAACTGCGAATGGAAGT
AATGGCTGGTTTTTGGACAAAACGCAGACCAATGCGCACATAGCCTTCTT
CTATATCGAATGCGTGTGCAATGCCTGGTTTACCTTTGAAATATTGGTGC
GCTTTATCTCATCGCCGAACAAGTGGGAGTTCATCAAGTCATCTGTTAAC
ATCATAGACTACATAGCGACGCTTAGTTTTTATATCGATCTAGTGCTTCA
GCGGTTCGCATCGCACCTGGAGAACGCTGACATCCTCGAGTTCTTCTCGA
TCATCCGCATCATGCGTCTGTTCAAGCTGACGCGCCACTCGTCCGGACTG
AAGATCCTGATCCAGACGTTCCGGGCCTCGGCCAAGGAGCTGACCCTGCT
GGTGTTCTTCCTCGTCCTGGGCATCGTGATCTTCGCCAGCCTTGTCTACT
ACGCGGAGCGCATCCAGCCCAATCCGCACAACGACTTCAACAGCATACCG
CTGGGCCTGTGGTGGGCCCTGGTCACAATGACCACCGTCGGCTACGGCGA
CATGGCCCCCAAAACCTACATCGGCATGTTCGTGGGCGCCCTCTGCGCCC
TGGCCGGCGTACTAACCATCGCACTGCCAGTGCCCGTCATCGTCAGCAAC
TTCGCCATGTACTACTCGCACACGCAGGCCAGGGCCAAACTGCCAAAGAA
GCGGAGACGAGTGCTTCCCGTCGAGCAGCCGCGCCAGCCCAGACTGCCAG
GTGCCCCTGGTGGTGTCAGTGGTTGCGGTACCCCGGGCTCGGGTCCCCAC
TCCGGTCCCATGGGATCCGGCGGTACTGGACCACGTCGCATGAACAATAA
AACAAAGGACCTGGTCAGCCCCAAGTCAGTTGCTCAACTTTTCGCAGGTC
CGCTGGGCGCAAGCATTGTGGCCATGAGTCCCCGGACAATGCTGGATCTC
AATCCTGCCCTGGCGATGGGCAAGCCTACGTTTCAGCCCCGTATACCCAC
CCCCCTGGCAGCCACGCCCCCTCCCCCCGTGAGTTCCGCTGGGGGGATGA
CAGCGTCTGGAATTGGAACTACTTCAGCCACTGGAGCCACTAGTGCACCA
CAACCAGCAACACCACTACCCAGCATTGCGGTGTCCACCACAGCGAGTGT
GGGCAAGGATTTGGGCATCTCGACCACCACCACCACGGCCCAGGAGACCA
GCAAGAAGGCCTTCCTCTAAAGGAGCAGCCCAGCCAAGGATTCAGCCACC
TGCTATTTATATTTATCCACGATCCCCATATCCTCCAATAAGCAATATCT
ATTCGATGTCATACAGAGCCTTCGCATACGTATTCACTAAGAACAAAGAT
GGTGTGTTTCAAAGTTAGCAAAAGGATCCTAACCTACTCGTATCACTTGA
GATCGTCTTTGTTTTCCTCATATCATCACACACTGTGTTTCGCAAAGCCT
CATATCGAAAAATATCGAAATGAATATCATATATTCACGAACGAGTCTAC
AATGGATCAGAATTAGCTGGAGATCAATCTTAAATCAAATATCGATTGTG
ATGCTATATTATGAAAAGTATTCTTTGATTTCAGAAGGGGTTTAGGATAT
TACTCTATATAAGCCATTTGACTGTTATTATATATTAGTTGCTTACTTTT
ATATATCGAATCCTATGTAATATCTCACACTGAAATGAAAAGGCCAATAT
TAAAGCAATACTTTGGTTCAAGACCAATTATACACCTAGCTAAAAATTAC
CATTCTGTTTAATCCAGCAATAAAATATGTTTTTAACCAAAAAAAAAAAA
AAAA

RE54962.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
Shaw.e 4273 Shaw.e 44..2881 1..2838 14190 100 Plus
Shaw.g 3857 Shaw.g 44..2881 1..2838 14190 100 Plus
Shaw.d 4387 Shaw.d 44..2881 1..2838 14190 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3726236..3727146 1928..2838 4480 99.5 Plus
chr2L 23010047 chr2L 3722200..3722807 1196..1803 3010 99.7 Plus
chr2L 23010047 chr2L 3717735..3718033 1..299 1495 100 Plus
chr2L 23010047 chr2L 3721899..3722121 976..1198 1085 99.1 Plus
chr2L 23010047 chr2L 3720919..3721137 446..664 1080 99.5 Plus
chr2L 23010047 chr2L 3721368..3721565 780..977 990 100 Plus
chr2L 23010047 chr2L 3720516..3720639 330..453 620 100 Plus
chr2L 23010047 chr2L 3721188..3721310 660..782 600 99.2 Plus
chr2L 23010047 chr2L 3723181..3723312 1798..1929 600 97 Plus
chr2L 23010047 chr2L 9378978..9379186 1728..1520 490 82.3 Minus
chr2L 23010047 chr2L 9379359..9379524 1508..1343 335 80.1 Minus
chr2L 23010047 chr2L 9383573..9383718 664..519 295 80.1 Minus
chr2L 23010047 chr2L 9380590..9380694 767..663 255 82.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3726677..3727587 1928..2838 4555 100 Plus
2L 23513712 2L 3722652..3723259 1196..1803 3040 100 Plus
2L 23513712 2L 3718187..3718485 1..299 1495 100 Plus
2L 23513712 2L 3722351..3722573 976..1198 1115 100 Plus
2L 23513712 2L 3721371..3721589 446..664 1080 99.5 Plus
2L 23513712 2L 3721820..3722017 780..977 990 100 Plus
2L 23513712 2L 3723633..3723764 1798..1929 660 100 Plus
2L 23513712 2L 3720968..3721091 330..453 620 100 Plus
2L 23513712 2L 3721640..3721762 660..782 615 100 Plus
2L 23513712 2L 9380049..9380257 1728..1520 490 82.3 Minus
2L 23513712 2L 9380430..9380595 1508..1343 335 80.1 Minus
2L 23513712 2L 9384640..9384785 664..519 295 80.1 Minus
2L 23513712 2L 9381661..9381765 767..663 240 81.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3726677..3727587 1928..2838 4555 100 Plus
2L 23513712 2L 3722652..3723259 1196..1803 3040 100 Plus
2L 23513712 2L 3718187..3718485 1..299 1495 100 Plus
2L 23513712 2L 3722351..3722573 976..1198 1115 100 Plus
2L 23513712 2L 3721371..3721589 446..664 1080 99.5 Plus
2L 23513712 2L 3721820..3722017 780..977 990 100 Plus
2L 23513712 2L 3723633..3723764 1798..1929 660 100 Plus
2L 23513712 2L 3720968..3721091 330..453 620 100 Plus
2L 23513712 2L 3721640..3721762 660..782 615 100 Plus
2L 23513712 2L 9380049..9380257 1728..1520 490 82.2 Minus
2L 23513712 2L 9380430..9380595 1508..1343 335 80.1 Minus
2L 23513712 2L 9384640..9384785 664..519 295 80.1 Minus
2L 23513712 2L 9381661..9381765 767..663 240 81.9 Minus
2L 23513712 2L 3720873..3720904 298..329 160 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:47:40 has no hits.

RE54962.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:48:32 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3717735..3718033 1..299 100 -> Plus
chr2L 3720423..3720452 300..329 100 -> Plus
chr2L 3720516..3720639 330..453 100 -> Plus
chr2L 3720927..3721137 454..664 100 -> Plus
chr2L 3721193..3721310 665..782 99 -> Plus
chr2L 3721371..3721565 783..977 100 -> Plus
chr2L 3721901..3722119 978..1196 99 -> Plus
chr2L 3722201..3722804 1197..1800 99 -> Plus
chr2L 3723184..3723312 1801..1929 96 -> Plus
chr2L 3726238..3727146 1930..2838 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:44 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RC 29..1860 439..2270 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:26 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RC 29..1860 439..2270 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:32:33 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RC 29..1860 439..2270 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:48 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RC 29..1860 439..2270 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:09 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RC 29..1860 439..2270 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:36:02 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RB 1..2838 1..2838 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:26 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RB 1..2838 1..2838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:32:33 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RB 3..2840 1..2838 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:48 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RB 1..2838 1..2838 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:09 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RB 3..2840 1..2838 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:32 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3723636..3723764 1801..1929 100 -> Plus
2L 3718187..3718485 1..299 100 -> Plus
2L 3720875..3720904 300..329 100 -> Plus
2L 3720968..3721091 330..453 100 -> Plus
2L 3721379..3721589 454..664 100 -> Plus
2L 3721645..3721762 665..782 100 -> Plus
2L 3721823..3722017 783..977 100 -> Plus
2L 3722353..3722571 978..1196 100 -> Plus
2L 3722653..3723256 1197..1800 100 -> Plus
2L 3726679..3727587 1930..2838 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:32 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3723636..3723764 1801..1929 100 -> Plus
2L 3718187..3718485 1..299 100 -> Plus
2L 3720875..3720904 300..329 100 -> Plus
2L 3720968..3721091 330..453 100 -> Plus
2L 3721379..3721589 454..664 100 -> Plus
2L 3721645..3721762 665..782 100 -> Plus
2L 3721823..3722017 783..977 100 -> Plus
2L 3722353..3722571 978..1196 100 -> Plus
2L 3722653..3723256 1197..1800 100 -> Plus
2L 3726679..3727587 1930..2838 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:32 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3723636..3723764 1801..1929 100 -> Plus
2L 3718187..3718485 1..299 100 -> Plus
2L 3720875..3720904 300..329 100 -> Plus
2L 3720968..3721091 330..453 100 -> Plus
2L 3721379..3721589 454..664 100 -> Plus
2L 3721645..3721762 665..782 100 -> Plus
2L 3721823..3722017 783..977 100 -> Plus
2L 3722353..3722571 978..1196 100 -> Plus
2L 3722653..3723256 1197..1800 100 -> Plus
2L 3726679..3727587 1930..2838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:32:33 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3718187..3718485 1..299 100 -> Plus
arm_2L 3720875..3720904 300..329 100 -> Plus
arm_2L 3720968..3721091 330..453 100 -> Plus
arm_2L 3721379..3721589 454..664 100 -> Plus
arm_2L 3721645..3721762 665..782 100 -> Plus
arm_2L 3721823..3722017 783..977 100 -> Plus
arm_2L 3722353..3722571 978..1196 100 -> Plus
arm_2L 3722653..3723256 1197..1800 100 -> Plus
arm_2L 3723636..3723764 1801..1929 100 -> Plus
arm_2L 3726679..3727587 1930..2838 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:30 Download gff for RE54962.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3722353..3722571 978..1196 100 -> Plus
2L 3718187..3718485 1..299 100 -> Plus
2L 3720875..3720904 300..329 100 -> Plus
2L 3720968..3721091 330..453 100 -> Plus
2L 3721379..3721589 454..664 100 -> Plus
2L 3721645..3721762 665..782 100 -> Plus
2L 3721823..3722017 783..977 100 -> Plus
2L 3722653..3723256 1197..1800 100 -> Plus
2L 3723636..3723764 1801..1929 100 -> Plus
2L 3726679..3727587 1930..2838 100   Plus

RE54962.pep Sequence

Translation from 455 to 2269

> RE54962.pep
MNLINMDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPIL
NEYFFDRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVE
PCCWMTYTQHRDTQETLAVLDRLDLDTEKPSEEELARKFGFEEDYYKGTI
SWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHPDMR
VPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRF
ISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSII
RIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYA
ERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALA
GVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRQPRLPGA
PGGVSGCGTPGSGPHSGPMGSGGTGPRRMNNKTKDLVSPKSVAQLFAGPL
GASIVAMSPRTMLDLNPALAMGKPTFQPRIPTPLAATPPPPVSSAGGMTA
SGIGTTSATGATSAPQPATPLPSIAVSTTASVGKDLGISTTTTTAQETSK
KAFL*

RE54962.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15250-PA 593 GF15250-PA 1..593 1..604 2870 92.6 Plus
Dana\GF24253-PA 983 GF24253-PA 305..707 10..433 825 39 Plus
Dana\GF22027-PA 755 GF22027-PA 3..194 21..217 805 71.6 Plus
Dana\GF22027-PA 755 GF22027-PA 297..519 216..451 804 72 Plus
Dana\GF19526-PA 658 GF19526-PA 80..485 5..432 717 37.2 Plus
Dana\GF10727-PA 571 GF10727-PA 39..532 8..554 696 31.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24961-PA 498 GG24961-PA 1..491 1..491 2666 100 Plus
Dere\GG14890-PA 1024 GG14890-PA 312..714 10..433 826 39 Plus
Dere\GG24030-PA 793 GG24030-PA 301..631 216..540 810 55.9 Plus
Dere\GG24030-PA 793 GG24030-PA 12..193 20..201 807 75.8 Plus
Dere\GG18151-PA 651 GG18151-PA 92..497 5..432 718 37.2 Plus
Dere\GG13395-PA 490 GG13395-PA 39..427 8..435 687 36 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13703-PA 611 GH13703-PA 1..611 1..604 2768 89.1 Plus
Dgri\GH13599-PA 790 GH13599-PA 297..526 216..451 863 74.6 Plus
Dgri\GH16990-PA 1023 GH16990-PA 308..711 10..434 829 38.7 Plus
Dgri\GH13599-PA 790 GH13599-PA 5..188 20..203 812 75 Plus
Dgri\GH12305-PA 627 GH12305-PA 92..497 5..432 722 37.2 Plus
Dgri\GH14392-PA 571 GH14392-PA 39..532 8..554 700 31.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
Shaw-PC 619 CG2822-PC 16..619 1..604 3168 100 Plus
Shaw-PB 604 CG2822-PB 1..604 1..604 3168 100 Plus
Shaw-PE 598 CG2822-PE 1..598 1..604 3124 99 Plus
Shaw-PD 510 CG2822-PD 1..491 1..491 2606 100 Plus
Shaw-PA 498 CG2822-PA 1..491 1..491 2606 100 Plus
Shawl-PC 937 CG34366-PC 304..682 216..581 918 53.6 Plus
Shawl-PD 835 CG34366-PD 304..565 216..475 899 69.4 Plus
Shawl-PC 937 CG34366-PC 1..198 6..203 848 74.7 Plus
Shawl-PD 835 CG34366-PD 1..198 6..203 848 74.7 Plus
Shab-PK 799 CG43128-PK 307..709 10..433 783 39 Plus
Shab-PJ 972 CG43128-PJ 307..709 10..433 783 39 Plus
Shab-PA 985 CG1066-PA 307..709 10..433 783 39 Plus
Shab-PL 1010 CG43128-PL 307..709 10..433 783 39 Plus
Shab-PC 1011 CG1066-PC 307..709 10..433 783 39 Plus
Shab-PB 1015 CG1066-PB 307..709 10..433 783 39 Plus
Shab-PH 1537 CG1066-PH 307..709 10..433 783 39 Plus
Shab-PN 1602 CG43128-PN 307..709 10..433 783 39 Plus
Shab-PI 1602 CG1066-PI 307..709 10..433 783 39 Plus
Shab-PM 1607 CG43128-PM 307..709 10..433 783 39 Plus
Sh-PT 655 CG12348-PT 98..485 11..420 704 38.5 Plus
Sh-PD 571 CG12348-PD 53..440 11..420 703 38.3 Plus
Sh-PS 604 CG12348-PS 86..473 11..420 703 38.3 Plus
Sh-PQ 616 CG12348-PQ 98..485 11..420 703 38.3 Plus
Sh-PB 616 CG12348-PB 98..485 11..420 703 38.3 Plus
Sh-PJ 643 CG12348-PJ 86..473 11..420 703 38.5 Plus
Sh-PI 643 CG12348-PI 86..473 11..420 703 38.5 Plus
Sh-PC 643 CG12348-PC 86..473 11..420 703 38.5 Plus
Sh-PL 644 CG12348-PL 86..473 11..420 703 38.5 Plus
Sh-PE 655 CG12348-PE 98..485 11..420 703 38.5 Plus
Shal-PA 490 CG9262-PA 40..427 9..435 664 36 Plus
Shal-PC 520 CG9262-PC 40..427 9..435 664 36 Plus
Shal-PB 571 CG9262-PB 40..427 9..435 664 36 Plus
Sh-PK 297 CG12348-PK 46..275 11..279 354 33.2 Plus
Sh-PH 304 CG12348-PH 53..282 11..279 354 33.2 Plus
Sh-PA 304 CG12348-PA 53..282 11..279 354 33.2 Plus
Sh-PM 337 CG12348-PM 86..315 11..279 354 33.2 Plus
Sh-PF 349 CG12348-PF 98..327 11..279 354 33.2 Plus
KCNQ-PC 683 CG33135-PC 100..315 224..434 232 29 Plus
KCNQ-PD 774 CG33135-PD 66..281 224..434 232 29 Plus
KCNQ-PK 781 CG33135-PK 100..315 224..434 232 29 Plus
KCNQ-PG 805 CG33135-PG 97..312 224..434 232 29 Plus
KCNQ-PE 808 CG33135-PE 100..315 224..434 232 29 Plus
KCNQ-PH 823 CG33135-PH 100..315 224..434 232 29 Plus
KCNQ-PJ 827 CG33135-PJ 100..315 224..434 232 29 Plus
KCNQ-PI 839 CG33135-PI 100..315 224..434 232 29 Plus
KCNQ-PF 993 CG33135-PF 100..315 224..434 232 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23908-PA 608 GI23908-PA 1..608 1..604 2843 91 Plus
Dmoj\GI10169-PA 721 GI10169-PA 294..566 216..481 852 65.8 Plus
Dmoj\GI11404-PA 1054 GI11404-PA 358..761 10..434 828 38.7 Plus
Dmoj\GI10169-PA 721 GI10169-PA 2..187 16..201 805 74.2 Plus
Dmoj\GI15934-PA 620 GI15934-PA 92..497 5..432 721 37.2 Plus
Dmoj\GI13516-PA 571 GI13516-PA 39..532 8..554 695 31.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18670-PA 505 GL18670-PA 8..498 1..491 2608 97.6 Plus
Dper\GL25639-PA 745 GL25639-PA 293..523 215..451 850 73.8 Plus
Dper\GL25639-PA 745 GL25639-PA 3..190 21..206 803 73.9 Plus
Dper\GL20887-PA 490 GL20887-PA 39..427 8..434 681 35.3 Plus
Dper\GL10490-PA 979 GL10490-PA 96..315 220..434 247 28.5 Plus
Dper\GL18671-PA 102 GL18671-PA 1..102 512..604 183 58.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15475-PA 614 GA15475-PA 8..614 1..604 2812 90.2 Plus
Dpse\GA25363-PA 770 GA25363-PA 309..539 215..451 849 73.8 Plus
Dpse\GA25363-PA 770 GA25363-PA 18..206 20..206 810 74.1 Plus
Dpse\GA26555-PA 613 GA26555-PA 47..452 5..432 717 37.2 Plus
Dpse\GA21653-PA 490 GA21653-PA 39..427 8..434 681 35.3 Plus
Dpse\GA28551-PA 704 GA28551-PA 349..463 11..116 281 44.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18431-PA 580 GM18431-PA 1..580 1..604 2402 82 Plus
Dsec\GM12484-PA 675 GM12484-PA 313..564 203..464 808 67.2 Plus
Dsec\GM12484-PA 675 GM12484-PA 42..218 25..201 781 75.1 Plus
Dsec\GM22843-PA 653 GM22843-PA 92..497 5..432 718 37.2 Plus
Dsec\GM17707-PA 490 GM17707-PA 39..427 8..435 687 36 Plus
Dsec\GM14516-PA 373 GM14516-PA 1..94 338..433 264 49 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23250-PA 505 GD23250-PA 1..491 1..491 2668 100 Plus
Dsim\GD22359-PA 766 GD22359-PA 314..549 203..451 805 69.5 Plus
Dsim\GD22359-PA 766 GD22359-PA 43..219 25..201 779 75.1 Plus
Dsim\GD13713-PA 513 GD13713-PA 2..204 234..433 496 45.4 Plus
Dsim\GD17561-PA 315 GD17561-PA 9..314 8..349 461 31.3 Plus
Dsim\GD15655-PA 518 GD15655-PA 78..346 155..416 427 36.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21169-PA 618 GJ21169-PA 16..618 1..604 2738 89.9 Plus
Dvir\GJ13599-PA 1099 GJ13599-PA 350..752 10..433 829 39 Plus
Dvir\GJ18373-PA 706 GJ18373-PA 17..200 20..203 810 75 Plus
Dvir\GJ18373-PA 706 GJ18373-PA 319..541 216..451 808 72.5 Plus
Dvir\GJ16839-PA 630 GJ16839-PA 92..497 5..432 721 37.2 Plus
Dvir\GJ11877-PA 571 GJ11877-PA 39..532 8..554 697 31.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14646-PA 612 GK14646-PA 1..612 1..604 2705 87.9 Plus
Dwil\GK24809-PA 711 GK24809-PA 315..545 215..451 849 73.8 Plus
Dwil\GK16572-PA 1017 GK16572-PA 324..727 10..434 826 38.7 Plus
Dwil\GK24809-PA 711 GK24809-PA 20..203 20..203 806 75 Plus
Dwil\GK17943-PA 639 GK17943-PA 93..498 5..432 719 37.2 Plus
Dwil\GK19427-PA 571 GK19427-PA 39..532 8..554 697 31.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18252-PA 498 GE18252-PA 1..491 1..491 2666 100 Plus
Dyak\GE20344-PA 1031 GE20344-PA 321..723 10..433 825 39 Plus
Dyak\GE10555-PA 740 GE10555-PA 295..530 203..451 805 69.5 Plus
Dyak\GE10555-PA 740 GE10555-PA 19..200 20..201 800 75.3 Plus
Dyak\GE15560-PA 658 GE15560-PA 92..497 5..432 718 37.2 Plus
Dyak\GE22488-PA 552 GE22488-PA 20..513 8..554 704 31.8 Plus

RE54962.hyp Sequence

Translation from 455 to 2269

> RE54962.hyp
MNLINMDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPIL
NEYFFDRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVE
PCCWMTYTQHRDTQETLAVLDRLDLDTEKPSEEELARKFGFEEDYYKGTI
SWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHPDMR
VPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRF
ISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSII
RIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYA
ERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALA
GVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRQPRLPGA
PGGVSGCGTPGSGPHSGPMGSGGTGPRRMNNKTKDLVSPKSVAQLFAGPL
GASIVAMSPRTMLDLNPALAMGKPTFQPRIPTPLAATPPPPVSSAGGMTA
SGIGTTSATGATSAPQPATPLPSIAVSTTASVGKDLGISTTTTTAQETSK
KAFL*

RE54962.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Shaw-PC 619 CG2822-PC 16..619 1..604 3168 100 Plus
Shaw-PB 604 CG2822-PB 1..604 1..604 3168 100 Plus
Shaw-PE 598 CG2822-PE 1..598 1..604 3124 99 Plus
Shaw-PD 510 CG2822-PD 1..491 1..491 2606 100 Plus
Shaw-PA 498 CG2822-PA 1..491 1..491 2606 100 Plus