Clone RE54994 Report

Search the DGRC for RE54994

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:549
Well:94
Vector:pFlc-1
Associated Gene/TranscriptCG2909-RA
Protein status:RE54994.pep: gold
Preliminary Size:1921
Sequenced Size:2027

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2909 2001-12-14 Blastp of sequenced clone
CG2909 2002-01-01 Sim4 clustering to Release 2
CG2909 2003-01-01 Sim4 clustering to Release 3
CG2909 2008-04-29 Release 5.5 accounting
CG2909 2008-08-15 Release 5.9 accounting
CG2909 2008-12-18 5.12 accounting

Clone Sequence Records

RE54994.complete Sequence

2027 bp (2027 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071476

> RE54994.complete
AAAAAATGCAACCACCAAGATTCTATCACAAAGCATTTAAGTGTCATTGT
GAAATTATTATTCATTTCACAAATAAGGGGACTTTCTCTTCGAAAGGGTG
ACACTAATAGAGCTACCTGTAAATTGAAAAGTTTAAACCCAAAGACCATG
TCTACCTTTGGCGCTGAAGTGGATCAGGTTTGGCCAGCGGTCACCGGTGA
TTCCCCGCATCTCACTAATTTCGGACGCAAATTGCTGAAGGATTGCCGCC
AAGTGCAGAAACCAATCGGAGGATACGAAAATTTGGGCAATGTGATTAAA
TTGTCCGCGGAGTTTCCGCTGGAGTTCGGCGTGAACAGTGTCAAAGTATA
CCGGCAATCTCCATCGCGGCTTGCCCGGATAAATGAGGAAGTGGCATCCG
CCTATCCATTGATACACGAACGTACATTGGGCCTCTACTTGCAGTACTTG
GAGCACAAGTGTCGTTGGGGCAACGCGGTGGAAAAGCCCATCTACCGGAA
TTTATCGCTATGCGGATTTGTGCAACGTCTGCTGGTAAAGCGTTGCGCCA
GCTTCTTTGCGCGGAACGACAAGTACCTGCTGGTGAGCGGAGAGTCCGGG
GCCAGTGGCTTCGAAGCCGTGGGTACTCGGGAGGAGAAGGCGCCTCTGGT
GCTGGCCAACGTGCTCAGCTATGACGATATCAAGCTCTCCGCCCTGCTTT
CCGTGAGCTCCCGCACGGAGTTTGTCAATGAGGGCGAACGAACCAATTGC
GGTCACGTTGATCTGAACACGAAAACTTTGGAACGTCACGGGGTTATTGT
GGGCATGATTGGAGCCCGTCTGTCGCGACGTAATCTAATGGAGTTCCAGG
ACATTGTAATCGCACGTCAGCAGAATACGCGTGAAAGGGGCTACGGAATG
GCATTGGATGAGCCGGCTACCACGCGTGATGAGGACTATCGACGACTGTG
GCGCGAGTTCTATGCCACACGGGATCTCATCCACGGCCAGGCAGTCATTG
ACAATCAGCGTTTCGGACCATCGAAAAACAAGATGGACGTGTTCGACAAT
CTGGTGATGAAGCGGCGTTACGCCATCAGCTTCGACATGCTGCTGCTGGA
GGCAGAGGCAAGGGCAAAACGCGTGAAAAAGCTGGCGTACATCCATGTGG
TGGGCTTCGGCTTGGGCGTGTGGAAGGCAGCAGAACAGCAGGAGCGCATC
TTCATGGAGACCTTCGAGCAGCGTATGCGCACGCTGGGCAACAGGCTCAA
TAACGTTGGCCTCGTGCACTTCTCCTGGTTTTCGATCACACATTGCGGCG
GTCTAAGCAACGGATCGCTGATAGAGATTCCCGGGCATCCAAAGGATGGC
ATCAGGGTGCTCATTTCCAAGCGCAATCCAGCACGAAAATTGAGTGATCC
TGAGCACGCCGGAATGCTGCTGGTAGTCTCTTACGCTTGGGATGGAAACG
CCCTGCCGGGTAATGAATTCTGGATGAAAATGCTGCAGTCCACAGGTGAC
TCCTCGACGGCCTGCTCCACGTTGGTGGCCGAGCTGCACAATCCGTACAT
AAACACGAAATTCTGCAATGGAGGCAACCTGCACATCGCCTCACCGGAGC
ACGGGGTGCTCCACATAGCCGAATATGCCAAGCGGGTGATTCGGAGCGAG
AGTGACGCCTTATGAGATACGTGAATCTGCCTGTTATCTAATCTTATCTA
ATCGTAGCTACTGTTTTATTCCACACTTGCTGTAGGTCAATTCCATGACC
TTTTGACAGACGCATGACAATTCCAAAAAAAAAGGGAAAAAAAAGGATTT
TATATTGTAATCGATTTTATAAAACGACCATTTTAAACCAAAACCAACCA
ATTGATTGAATTGAACCAACCAATTGAAGCTTTAAAAAGCCATGAAAATG
CCTCGAAAACGAGAGAAATATGTAATAGAATTAAGTATTTTGGTTAAACC
ATCTTTATGTTTGTAAGCAGTGTAAATACATGTGTATAAATGCAGAGCAG
TTCCTTATGCCAAAAAAAAAAAAAAAA

RE54994.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2909-RA 2103 CG2909-RA 53..2064 3..2014 10045 99.9 Plus
Gip-RA 973 Gip-RA 901..973 2014..1942 365 100 Minus
CG3568-RA 1780 CG3568-RA 1139..1201 1141..1203 180 85.7 Plus
CG3568-RA 1780 CG3568-RA 653..714 661..722 160 83.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10218536..10219543 469..1476 5025 99.9 Plus
chrX 22417052 chrX 10219882..10220417 1476..2011 2680 100 Plus
chrX 22417052 chrX 10217944..10218265 3..324 1610 100 Plus
chrX 22417052 chrX 10218328..10218475 323..470 740 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10327065..10328072 469..1476 5025 99.9 Plus
X 23542271 X 10328411..10328949 1476..2014 2695 100 Plus
X 23542271 X 10326473..10326794 3..324 1610 100 Plus
X 23542271 X 10326857..10327004 323..470 740 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10335163..10336170 469..1476 5025 99.9 Plus
X 23527363 X 10336509..10337047 1476..2014 2695 100 Plus
X 23527363 X 10334571..10334892 3..324 1610 100 Plus
X 23527363 X 10334955..10335102 323..470 740 100 Plus
X 23527363 X 4551951..4552013 1141..1203 180 85.7 Plus
X 23527363 X 4551465..4551526 661..722 160 83.8 Plus
Blast to na_te.dros performed 2019-03-16 21:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 4192..4284 1872..1961 133 63.4 Plus

RE54994.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:18:09 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10217942..10218265 1..324 99 -> Plus
chrX 10218330..10218474 325..469 100 -> Plus
chrX 10218537..10219543 470..1476 99 -> Plus
chrX 10219883..10220417 1477..2011 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:46 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 1..1518 148..1665 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:05:50 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 1..1518 148..1665 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:25 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 1..1518 148..1665 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:25 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 1..1518 148..1665 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:14 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 1..1518 148..1665 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:33:59 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 3..2011 3..2011 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:05:50 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 3..2011 3..2011 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:25 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 8..2018 1..2011 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:25 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 3..2011 3..2011 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:14 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 8..2018 1..2011 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:09 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
X 10326471..10326794 1..324 99 -> Plus
X 10326859..10327003 325..469 100 -> Plus
X 10327066..10328072 470..1476 99 -> Plus
X 10328412..10328946 1477..2011 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:09 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
X 10326471..10326794 1..324 99 -> Plus
X 10326859..10327003 325..469 100 -> Plus
X 10327066..10328072 470..1476 99 -> Plus
X 10328412..10328946 1477..2011 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:09 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
X 10326471..10326794 1..324 99 -> Plus
X 10326859..10327003 325..469 100 -> Plus
X 10327066..10328072 470..1476 99 -> Plus
X 10328412..10328946 1477..2011 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:25 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10220504..10220827 1..324 99 -> Plus
arm_X 10220892..10221036 325..469 100 -> Plus
arm_X 10221099..10222105 470..1476 99 -> Plus
arm_X 10222445..10222979 1477..2011 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:06:40 Download gff for RE54994.complete
Subject Subject Range Query Range Percent Splice Strand
X 10334569..10334892 1..324 99 -> Plus
X 10334957..10335101 325..469 100 -> Plus
X 10335164..10336170 470..1476 99 -> Plus
X 10336510..10337044 1477..2011 100   Plus

RE54994.hyp Sequence

Translation from 0 to 1664

> RE54994.hyp
SKCNHQDSITKHLSVIVKLLFISQIRGLSLRKGDTNRATCKLKSLNPKTM
STFGAEVDQVWPAVTGDSPHLTNFGRKLLKDCRQVQKPIGGYENLGNVIK
LSAEFPLEFGVNSVKVYRQSPSRLARINEEVASAYPLIHERTLGLYLQYL
EHKCRWGNAVEKPIYRNLSLCGFVQRLLVKRCASFFARNDKYLLVSGESG
ASGFEAVGTREEKAPLVLANVLSYDDIKLSALLSVSSRTEFVNEGERTNC
GHVDLNTKTLERHGVIVGMIGARLSRRNLMEFQDIVIARQQNTRERGYGM
ALDEPATTRDEDYRRLWREFYATRDLIHGQAVIDNQRFGPSKNKMDVFDN
LVMKRRYAISFDMLLLEAEARAKRVKKLAYIHVVGFGLGVWKAAEQQERI
FMETFEQRMRTLGNRLNNVGLVHFSWFSITHCGGLSNGSLIEIPGHPKDG
IRVLISKRNPARKLSDPEHAGMLLVVSYAWDGNALPGNEFWMKMLQSTGD
SSTACSTLVAELHNPYINTKFCNGGNLHIASPEHGVLHIAEYAKRVIRSE
SDAL*

RE54994.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2909-PA 505 CG2909-PA 1..505 50..554 2635 100 Plus
CG3568-PA 508 CG3568-PA 2..507 37..547 1279 50.5 Plus

RE54994.pep Sequence

Translation from 147 to 1664

> RE54994.pep
MSTFGAEVDQVWPAVTGDSPHLTNFGRKLLKDCRQVQKPIGGYENLGNVI
KLSAEFPLEFGVNSVKVYRQSPSRLARINEEVASAYPLIHERTLGLYLQY
LEHKCRWGNAVEKPIYRNLSLCGFVQRLLVKRCASFFARNDKYLLVSGES
GASGFEAVGTREEKAPLVLANVLSYDDIKLSALLSVSSRTEFVNEGERTN
CGHVDLNTKTLERHGVIVGMIGARLSRRNLMEFQDIVIARQQNTRERGYG
MALDEPATTRDEDYRRLWREFYATRDLIHGQAVIDNQRFGPSKNKMDVFD
NLVMKRRYAISFDMLLLEAEARAKRVKKLAYIHVVGFGLGVWKAAEQQER
IFMETFEQRMRTLGNRLNNVGLVHFSWFSITHCGGLSNGSLIEIPGHPKD
GIRVLISKRNPARKLSDPEHAGMLLVVSYAWDGNALPGNEFWMKMLQSTG
DSSTACSTLVAELHNPYINTKFCNGGNLHIASPEHGVLHIAEYAKRVIRS
ESDAL*

RE54994.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19418-PA 503 GF19418-PA 1..503 1..502 2126 76.9 Plus
Dana\GF19356-PA 507 GF19356-PA 36..500 25..495 1159 48.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18351-PA 504 GG18351-PA 1..504 1..504 2462 90.3 Plus
Dere\GG18711-PA 516 GG18711-PA 24..515 1..498 1334 50.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12012-PA 504 GH12012-PA 1..500 1..498 1820 68 Plus
Dgri\GH12722-PA 501 GH12722-PA 16..500 12..498 1285 51.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2909-PA 505 CG2909-PA 1..505 1..505 2635 100 Plus
CG3568-PA 508 CG3568-PA 24..507 11..498 1277 51.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15192-PA 504 GI15192-PA 1..503 1..502 1839 68.4 Plus
Dmoj\GI15399-PA 501 GI15399-PA 3..493 5..498 1287 50.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26843-PA 509 GL26843-PA 1..501 1..501 2027 73.9 Plus
Dper\GL19969-PA 492 GL19969-PA 10..489 10..500 1314 52.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15510-PA 509 GA15510-PA 1..501 1..501 2019 73.5 Plus
Dpse\GA28591-PA 492 GA28591-PA 10..486 10..497 1274 53.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11417-PA 504 GM11417-PA 1..502 1..502 2445 90 Plus
Dsec\GM12349-PA 508 GM12349-PA 24..507 11..498 1283 50.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24700-PA 450 GD24700-PA 134..448 188..502 1565 92.1 Plus
Dsim\GD16694-PA 508 GD16694-PA 14..507 1..498 1267 48.6 Plus
Dsim\GD24700-PA 450 GD24700-PA 1..134 1..134 624 82.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14799-PA 504 GJ14799-PA 1..502 1..500 1883 69.3 Plus
Dvir\GJ14797-PA 489 GJ14797-PA 3..486 10..498 1338 53.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10210-PA 516 GK10210-PA 1..500 1..498 1880 68 Plus
Dwil\GK25024-PA 503 GK25024-PA 1..500 1..498 1702 62.3 Plus
Dwil\GK16988-PA 484 GK16988-PA 1..477 11..497 1297 51 Plus
Dwil\GK14526-PA 489 GK14526-PA 8..485 12..499 1278 50.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17840-PA 504 GE17840-PA 1..504 1..504 2436 88.9 Plus
Dyak\GE16350-PA 493 GE16350-PA 11..492 11..498 1320 51.6 Plus