BDGP Sequence Production Resources |
Search the DGRC for RE54994
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 549 |
Well: | 94 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2909-RA |
Protein status: | RE54994.pep: gold |
Preliminary Size: | 1921 |
Sequenced Size: | 2027 |
Gene | Date | Evidence |
---|---|---|
CG2909 | 2001-12-14 | Blastp of sequenced clone |
CG2909 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2909 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2909 | 2008-04-29 | Release 5.5 accounting |
CG2909 | 2008-08-15 | Release 5.9 accounting |
CG2909 | 2008-12-18 | 5.12 accounting |
2027 bp (2027 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071476
> RE54994.complete AAAAAATGCAACCACCAAGATTCTATCACAAAGCATTTAAGTGTCATTGT GAAATTATTATTCATTTCACAAATAAGGGGACTTTCTCTTCGAAAGGGTG ACACTAATAGAGCTACCTGTAAATTGAAAAGTTTAAACCCAAAGACCATG TCTACCTTTGGCGCTGAAGTGGATCAGGTTTGGCCAGCGGTCACCGGTGA TTCCCCGCATCTCACTAATTTCGGACGCAAATTGCTGAAGGATTGCCGCC AAGTGCAGAAACCAATCGGAGGATACGAAAATTTGGGCAATGTGATTAAA TTGTCCGCGGAGTTTCCGCTGGAGTTCGGCGTGAACAGTGTCAAAGTATA CCGGCAATCTCCATCGCGGCTTGCCCGGATAAATGAGGAAGTGGCATCCG CCTATCCATTGATACACGAACGTACATTGGGCCTCTACTTGCAGTACTTG GAGCACAAGTGTCGTTGGGGCAACGCGGTGGAAAAGCCCATCTACCGGAA TTTATCGCTATGCGGATTTGTGCAACGTCTGCTGGTAAAGCGTTGCGCCA GCTTCTTTGCGCGGAACGACAAGTACCTGCTGGTGAGCGGAGAGTCCGGG GCCAGTGGCTTCGAAGCCGTGGGTACTCGGGAGGAGAAGGCGCCTCTGGT GCTGGCCAACGTGCTCAGCTATGACGATATCAAGCTCTCCGCCCTGCTTT CCGTGAGCTCCCGCACGGAGTTTGTCAATGAGGGCGAACGAACCAATTGC GGTCACGTTGATCTGAACACGAAAACTTTGGAACGTCACGGGGTTATTGT GGGCATGATTGGAGCCCGTCTGTCGCGACGTAATCTAATGGAGTTCCAGG ACATTGTAATCGCACGTCAGCAGAATACGCGTGAAAGGGGCTACGGAATG GCATTGGATGAGCCGGCTACCACGCGTGATGAGGACTATCGACGACTGTG GCGCGAGTTCTATGCCACACGGGATCTCATCCACGGCCAGGCAGTCATTG ACAATCAGCGTTTCGGACCATCGAAAAACAAGATGGACGTGTTCGACAAT CTGGTGATGAAGCGGCGTTACGCCATCAGCTTCGACATGCTGCTGCTGGA GGCAGAGGCAAGGGCAAAACGCGTGAAAAAGCTGGCGTACATCCATGTGG TGGGCTTCGGCTTGGGCGTGTGGAAGGCAGCAGAACAGCAGGAGCGCATC TTCATGGAGACCTTCGAGCAGCGTATGCGCACGCTGGGCAACAGGCTCAA TAACGTTGGCCTCGTGCACTTCTCCTGGTTTTCGATCACACATTGCGGCG GTCTAAGCAACGGATCGCTGATAGAGATTCCCGGGCATCCAAAGGATGGC ATCAGGGTGCTCATTTCCAAGCGCAATCCAGCACGAAAATTGAGTGATCC TGAGCACGCCGGAATGCTGCTGGTAGTCTCTTACGCTTGGGATGGAAACG CCCTGCCGGGTAATGAATTCTGGATGAAAATGCTGCAGTCCACAGGTGAC TCCTCGACGGCCTGCTCCACGTTGGTGGCCGAGCTGCACAATCCGTACAT AAACACGAAATTCTGCAATGGAGGCAACCTGCACATCGCCTCACCGGAGC ACGGGGTGCTCCACATAGCCGAATATGCCAAGCGGGTGATTCGGAGCGAG AGTGACGCCTTATGAGATACGTGAATCTGCCTGTTATCTAATCTTATCTA ATCGTAGCTACTGTTTTATTCCACACTTGCTGTAGGTCAATTCCATGACC TTTTGACAGACGCATGACAATTCCAAAAAAAAAGGGAAAAAAAAGGATTT TATATTGTAATCGATTTTATAAAACGACCATTTTAAACCAAAACCAACCA ATTGATTGAATTGAACCAACCAATTGAAGCTTTAAAAAGCCATGAAAATG CCTCGAAAACGAGAGAAATATGTAATAGAATTAAGTATTTTGGTTAAACC ATCTTTATGTTTGTAAGCAGTGTAAATACATGTGTATAAATGCAGAGCAG TTCCTTATGCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2909-RA | 2103 | CG2909-RA | 53..2064 | 3..2014 | 10045 | 99.9 | Plus |
Gip-RA | 973 | Gip-RA | 901..973 | 2014..1942 | 365 | 100 | Minus |
CG3568-RA | 1780 | CG3568-RA | 1139..1201 | 1141..1203 | 180 | 85.7 | Plus |
CG3568-RA | 1780 | CG3568-RA | 653..714 | 661..722 | 160 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 10218536..10219543 | 469..1476 | 5025 | 99.9 | Plus |
chrX | 22417052 | chrX | 10219882..10220417 | 1476..2011 | 2680 | 100 | Plus |
chrX | 22417052 | chrX | 10217944..10218265 | 3..324 | 1610 | 100 | Plus |
chrX | 22417052 | chrX | 10218328..10218475 | 323..470 | 740 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 10327065..10328072 | 469..1476 | 5025 | 99.9 | Plus |
X | 23542271 | X | 10328411..10328949 | 1476..2014 | 2695 | 100 | Plus |
X | 23542271 | X | 10326473..10326794 | 3..324 | 1610 | 100 | Plus |
X | 23542271 | X | 10326857..10327004 | 323..470 | 740 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 10335163..10336170 | 469..1476 | 5025 | 99.9 | Plus |
X | 23527363 | X | 10336509..10337047 | 1476..2014 | 2695 | 100 | Plus |
X | 23527363 | X | 10334571..10334892 | 3..324 | 1610 | 100 | Plus |
X | 23527363 | X | 10334955..10335102 | 323..470 | 740 | 100 | Plus |
X | 23527363 | X | 4551951..4552013 | 1141..1203 | 180 | 85.7 | Plus |
X | 23527363 | X | 4551465..4551526 | 661..722 | 160 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 4192..4284 | 1872..1961 | 133 | 63.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 10217942..10218265 | 1..324 | 99 | -> | Plus |
chrX | 10218330..10218474 | 325..469 | 100 | -> | Plus |
chrX | 10218537..10219543 | 470..1476 | 99 | -> | Plus |
chrX | 10219883..10220417 | 1477..2011 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2909-RA | 1..1518 | 148..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2909-RA | 1..1518 | 148..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2909-RA | 1..1518 | 148..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2909-RA | 1..1518 | 148..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2909-RA | 1..1518 | 148..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2909-RA | 3..2011 | 3..2011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2909-RA | 3..2011 | 3..2011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2909-RA | 8..2018 | 1..2011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2909-RA | 3..2011 | 3..2011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2909-RA | 8..2018 | 1..2011 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10326471..10326794 | 1..324 | 99 | -> | Plus |
X | 10326859..10327003 | 325..469 | 100 | -> | Plus |
X | 10327066..10328072 | 470..1476 | 99 | -> | Plus |
X | 10328412..10328946 | 1477..2011 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10326471..10326794 | 1..324 | 99 | -> | Plus |
X | 10326859..10327003 | 325..469 | 100 | -> | Plus |
X | 10327066..10328072 | 470..1476 | 99 | -> | Plus |
X | 10328412..10328946 | 1477..2011 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10326471..10326794 | 1..324 | 99 | -> | Plus |
X | 10326859..10327003 | 325..469 | 100 | -> | Plus |
X | 10327066..10328072 | 470..1476 | 99 | -> | Plus |
X | 10328412..10328946 | 1477..2011 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 10220504..10220827 | 1..324 | 99 | -> | Plus |
arm_X | 10220892..10221036 | 325..469 | 100 | -> | Plus |
arm_X | 10221099..10222105 | 470..1476 | 99 | -> | Plus |
arm_X | 10222445..10222979 | 1477..2011 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 10334569..10334892 | 1..324 | 99 | -> | Plus |
X | 10334957..10335101 | 325..469 | 100 | -> | Plus |
X | 10335164..10336170 | 470..1476 | 99 | -> | Plus |
X | 10336510..10337044 | 1477..2011 | 100 | Plus |
Translation from 0 to 1664
> RE54994.hyp SKCNHQDSITKHLSVIVKLLFISQIRGLSLRKGDTNRATCKLKSLNPKTM STFGAEVDQVWPAVTGDSPHLTNFGRKLLKDCRQVQKPIGGYENLGNVIK LSAEFPLEFGVNSVKVYRQSPSRLARINEEVASAYPLIHERTLGLYLQYL EHKCRWGNAVEKPIYRNLSLCGFVQRLLVKRCASFFARNDKYLLVSGESG ASGFEAVGTREEKAPLVLANVLSYDDIKLSALLSVSSRTEFVNEGERTNC GHVDLNTKTLERHGVIVGMIGARLSRRNLMEFQDIVIARQQNTRERGYGM ALDEPATTRDEDYRRLWREFYATRDLIHGQAVIDNQRFGPSKNKMDVFDN LVMKRRYAISFDMLLLEAEARAKRVKKLAYIHVVGFGLGVWKAAEQQERI FMETFEQRMRTLGNRLNNVGLVHFSWFSITHCGGLSNGSLIEIPGHPKDG IRVLISKRNPARKLSDPEHAGMLLVVSYAWDGNALPGNEFWMKMLQSTGD SSTACSTLVAELHNPYINTKFCNGGNLHIASPEHGVLHIAEYAKRVIRSE SDAL*
Translation from 147 to 1664
> RE54994.pep MSTFGAEVDQVWPAVTGDSPHLTNFGRKLLKDCRQVQKPIGGYENLGNVI KLSAEFPLEFGVNSVKVYRQSPSRLARINEEVASAYPLIHERTLGLYLQY LEHKCRWGNAVEKPIYRNLSLCGFVQRLLVKRCASFFARNDKYLLVSGES GASGFEAVGTREEKAPLVLANVLSYDDIKLSALLSVSSRTEFVNEGERTN CGHVDLNTKTLERHGVIVGMIGARLSRRNLMEFQDIVIARQQNTRERGYG MALDEPATTRDEDYRRLWREFYATRDLIHGQAVIDNQRFGPSKNKMDVFD NLVMKRRYAISFDMLLLEAEARAKRVKKLAYIHVVGFGLGVWKAAEQQER IFMETFEQRMRTLGNRLNNVGLVHFSWFSITHCGGLSNGSLIEIPGHPKD GIRVLISKRNPARKLSDPEHAGMLLVVSYAWDGNALPGNEFWMKMLQSTG DSSTACSTLVAELHNPYINTKFCNGGNLHIASPEHGVLHIAEYAKRVIRS ESDAL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19418-PA | 503 | GF19418-PA | 1..503 | 1..502 | 2126 | 76.9 | Plus |
Dana\GF19356-PA | 507 | GF19356-PA | 36..500 | 25..495 | 1159 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18351-PA | 504 | GG18351-PA | 1..504 | 1..504 | 2462 | 90.3 | Plus |
Dere\GG18711-PA | 516 | GG18711-PA | 24..515 | 1..498 | 1334 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12012-PA | 504 | GH12012-PA | 1..500 | 1..498 | 1820 | 68 | Plus |
Dgri\GH12722-PA | 501 | GH12722-PA | 16..500 | 12..498 | 1285 | 51.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2909-PA | 505 | CG2909-PA | 1..505 | 1..505 | 2635 | 100 | Plus |
CG3568-PA | 508 | CG3568-PA | 24..507 | 11..498 | 1277 | 51.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15192-PA | 504 | GI15192-PA | 1..503 | 1..502 | 1839 | 68.4 | Plus |
Dmoj\GI15399-PA | 501 | GI15399-PA | 3..493 | 5..498 | 1287 | 50.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26843-PA | 509 | GL26843-PA | 1..501 | 1..501 | 2027 | 73.9 | Plus |
Dper\GL19969-PA | 492 | GL19969-PA | 10..489 | 10..500 | 1314 | 52.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15510-PA | 509 | GA15510-PA | 1..501 | 1..501 | 2019 | 73.5 | Plus |
Dpse\GA28591-PA | 492 | GA28591-PA | 10..486 | 10..497 | 1274 | 53.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11417-PA | 504 | GM11417-PA | 1..502 | 1..502 | 2445 | 90 | Plus |
Dsec\GM12349-PA | 508 | GM12349-PA | 24..507 | 11..498 | 1283 | 50.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24700-PA | 450 | GD24700-PA | 134..448 | 188..502 | 1565 | 92.1 | Plus |
Dsim\GD16694-PA | 508 | GD16694-PA | 14..507 | 1..498 | 1267 | 48.6 | Plus |
Dsim\GD24700-PA | 450 | GD24700-PA | 1..134 | 1..134 | 624 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14799-PA | 504 | GJ14799-PA | 1..502 | 1..500 | 1883 | 69.3 | Plus |
Dvir\GJ14797-PA | 489 | GJ14797-PA | 3..486 | 10..498 | 1338 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10210-PA | 516 | GK10210-PA | 1..500 | 1..498 | 1880 | 68 | Plus |
Dwil\GK25024-PA | 503 | GK25024-PA | 1..500 | 1..498 | 1702 | 62.3 | Plus |
Dwil\GK16988-PA | 484 | GK16988-PA | 1..477 | 11..497 | 1297 | 51 | Plus |
Dwil\GK14526-PA | 489 | GK14526-PA | 8..485 | 12..499 | 1278 | 50.3 | Plus |