Clone RE55033 Report

Search the DGRC for RE55033

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:550
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG7718-RA
Protein status:RE55033.pep: gold
Preliminary Size:1690
Sequenced Size:1947

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7718 2001-12-14 Blastp of sequenced clone
CG7718 2002-01-01 Sim4 clustering to Release 2
CG7718 2003-01-01 Sim4 clustering to Release 3
CG7718 2008-04-29 Release 5.5 accounting
CG7718 2008-08-15 Release 5.9 accounting
CG7718 2008-12-18 5.12 accounting

Clone Sequence Records

RE55033.complete Sequence

1947 bp (1947 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071478

> RE55033.complete
GATAATTCCCGATAGCTATAAATTGTTATCGAATCCCAGCTCGCTTTGCA
ACACTTGCGTTCCACCTGGAATTTATTTACGTGCTGAAATTCGAAGTTTT
TTTTGTGATAAAACAGCACTCCATGAATGAAAGTGTGTTCCGGATACAGC
CAAACAGACAGTGAGCAATGCGCCATACCCTGTCATCAAATAGCAGCCGC
CCAGAGTGAGGATCCGCTTGCCAATCCGTCAGAGAAATCCCCGCCAAGAT
GATGCCATACCTTCGCCGCCTTTTCAGCCAGGAGCTCTCTCCGGCTGCTC
AGGGCGATTTTCTGGGCTGCTTGCAGCAGGCGCCCAGTGTCCTGGCCACC
GGATTCCCTGGAGCACCCGCACTGGAGAGCCTAAGTTGGTTACACAACCT
AGCGCCGTGCTTCCCGCTGCGAGGCGATCAAATTCAGGTCATCCACGAGC
CAAAGCACTTCTACGAAACGCTGGTGCAACGAATCGGTCAGGCCAAACGC
CGTATAGTGCTGGCCAGTTTGTACCTGGGCACTGGGCAACTGGAGAACGC
AATGGTTCAGACGTTGCGTCACAGCCTGGAGCAACAGTCTGCCCTGAGGC
TCAACGTGCTGTTGGACTTTACACGCGGCACGCGGGGAACCCTCAACTCC
AAGACCATGTTGCTACCCCTGGTCCGCGACTTTGCGAGCCAGGTGCAGCT
ATCCCTGTACCATACGCCTGATCTGCGCGGGATGACAAAGCGACTAGCAC
CGCCACGGTGGAATGAGCTTCTCGGACTACAGCACATGAAGGTCTACCTG
TTCGACGATGCCGTGATCATATCAGGCGCCAATCTGTCCAATGACTACTT
CACCAACCGGCAGGATCGATACATACTCATTGAGGACAAACCGTTGGCGG
ATTTCTATGCGCAGTTCATCGAACGCGTTCAAGAGTTTAGTTTGGCAGTG
GCGCCAGATGCCAGCGAGGGACTGCACCGCAACTGGCGAATACTGCCGTA
CGAGGGCACCAAGGAGCAGTTTATCCAGCTTGCCCGTAAACGTATTTCCG
ATTTAGTGCAGGAGACGTTTCAGCGGCAGGCGCGAACTAAAGAGCAGAAT
CCGCAGGCAGACACATGGATTTTTCCGCTGCTTGAGATGGGCCAGATCGG
CATTCATCACGACAGCGTGGTGACCAAGCGGCTGCTCTCCAACTGCTTGT
CTGGATCACGGCTGAAACTGGCCACCGGGTACTTCAACCTGACGCAGGAG
TACATGGACACGCTCACGCACAAGTGCCTGGCCCAATGCAGCATACTGAT
GGCTCATCCAAATGCAAACGGCTTTCAGGGTGCCAAAGGACCAGCGGGCG
GAATTCCGGCTGCCTACACACTGATAGCCAAGAGTTTCTACGAGAGCCTG
GTCCGCCGGAAGCAAAACCACCGCGTTAACTTCTTCGAGTACGAAAAGCC
CGGCTGGACGTACCATGCTAAAGGACTGTGGTACTACCTGCCAGAGGCAA
TACTGCCAAACCTCACGCTGATCGGCTCTTCGAACTTTGGCGAGCGATCG
GTGAACCGCGATCTGGAGACACAGGTGTGCCTTGTGACGGCTAATAAGGA
TCTAAGCCAGCGGCTGCAGGCGGAAGCTGACCGGCTGTACGATCTGTCAC
AGACGGCGGAGCGGGAAATCGTCCAACGACCCGTTCCGCGATGGGTCCAG
GCCGTCGTTCGCATATTCAGGAATTTCTTCTAGGCTCTTCGATATAGTAG
TTTAATTTTTTTCGTTCTTTGTTAAGCCCCATATCCCAGGTAGTTAATTT
AGTTTTATAATTCGTGTTTAATCTTTGCCCTGGGCAAGTGTTTCTATTGC
TGGTAATTGTTGATTTTGTACACACGCTAAAGTTTGTTAAATAATAAAGA
GAATCGAGGGCATGCAGAAGGAAAAAAAAACAAAAAAAAAAAAAAAA

RE55033.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7718-RA 1955 CG7718-RA 31..1955 1..1925 9625 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14568842..14570155 1314..1 6495 99.6 Minus
chr3R 27901430 chr3R 14568172..14568784 1926..1314 3050 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18744728..18746041 1314..1 6570 100 Minus
3R 32079331 3R 18744058..18744670 1926..1314 3065 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18485559..18486872 1314..1 6570 100 Minus
3R 31820162 3R 18484889..18485501 1926..1314 3065 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:36:48 has no hits.

RE55033.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:38:17 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14568166..14568784 1314..1931 99 <- Minus
chr3R 14568843..14570155 1..1313 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:49 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
CG7718-RA 1..1485 249..1733 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:14:30 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
CG7718-RA 1..1485 249..1733 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:24:45 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
CG7718-RA 1..1485 249..1733 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:39:47 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
CG7718-RA 1..1485 249..1733 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:29:13 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
CG7718-RA 1..1485 249..1733 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:46:06 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
CG7718-RA 1..1920 1..1920 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:14:29 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
CG7718-RA 1..1921 1..1921 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:24:45 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
CG7718-RA 1..1921 1..1921 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:39:48 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
CG7718-RA 1..1920 1..1920 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:13 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
CG7718-RA 1..1921 1..1921 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:38:17 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18744052..18744670 1314..1931 99 <- Minus
3R 18744729..18746041 1..1313 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:38:17 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18744052..18744670 1314..1931 99 <- Minus
3R 18744729..18746041 1..1313 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:38:17 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18744052..18744670 1314..1931 99 <- Minus
3R 18744729..18746041 1..1313 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:24:45 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14569774..14570392 1314..1931 99 <- Minus
arm_3R 14570451..14571763 1..1313 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:16:27 Download gff for RE55033.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18484883..18485501 1314..1931 99 <- Minus
3R 18485560..18486872 1..1313 100   Minus

RE55033.pep Sequence

Translation from 248 to 1732

> RE55033.pep
MMPYLRRLFSQELSPAAQGDFLGCLQQAPSVLATGFPGAPALESLSWLHN
LAPCFPLRGDQIQVIHEPKHFYETLVQRIGQAKRRIVLASLYLGTGQLEN
AMVQTLRHSLEQQSALRLNVLLDFTRGTRGTLNSKTMLLPLVRDFASQVQ
LSLYHTPDLRGMTKRLAPPRWNELLGLQHMKVYLFDDAVIISGANLSNDY
FTNRQDRYILIEDKPLADFYAQFIERVQEFSLAVAPDASEGLHRNWRILP
YEGTKEQFIQLARKRISDLVQETFQRQARTKEQNPQADTWIFPLLEMGQI
GIHHDSVVTKRLLSNCLSGSRLKLATGYFNLTQEYMDTLTHKCLAQCSIL
MAHPNANGFQGAKGPAGGIPAAYTLIAKSFYESLVRRKQNHRVNFFEYEK
PGWTYHAKGLWYYLPEAILPNLTLIGSSNFGERSVNRDLETQVCLVTANK
DLSQRLQAEADRLYDLSQTAEREIVQRPVPRWVQAVVRIFRNFF*

RE55033.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17865-PA 493 GF17865-PA 1..493 2..494 2487 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16338-PA 493 GG16338-PA 1..493 2..494 2609 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19406-PA 495 GH19406-PA 1..495 2..494 2327 86.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7718-PA 494 CG7718-PA 1..494 1..494 2574 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22216-PA 494 GI22216-PA 1..494 2..494 2313 85 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23108-PA 493 GL23108-PA 1..493 2..494 2379 88.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20541-PA 493 GA20541-PA 1..493 2..494 2378 88.2 Plus
Dpse\GA22428-PA 411 GA22428-PA 1..410 2..411 1974 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18684-PA 494 GM18684-PA 1..494 1..494 2617 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20153-PA 494 GD20153-PA 1..494 1..494 2640 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24337-PA 494 GJ24337-PA 1..494 2..494 2341 86.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22604-PA 495 GK22604-PA 1..495 1..494 2337 86.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25174-PA 494 GE25174-PA 1..494 1..494 2579 97.2 Plus

RE55033.hyp Sequence

Translation from 248 to 1732

> RE55033.hyp
MMPYLRRLFSQELSPAAQGDFLGCLQQAPSVLATGFPGAPALESLSWLHN
LAPCFPLRGDQIQVIHEPKHFYETLVQRIGQAKRRIVLASLYLGTGQLEN
AMVQTLRHSLEQQSALRLNVLLDFTRGTRGTLNSKTMLLPLVRDFASQVQ
LSLYHTPDLRGMTKRLAPPRWNELLGLQHMKVYLFDDAVIISGANLSNDY
FTNRQDRYILIEDKPLADFYAQFIERVQEFSLAVAPDASEGLHRNWRILP
YEGTKEQFIQLARKRISDLVQETFQRQARTKEQNPQADTWIFPLLEMGQI
GIHHDSVVTKRLLSNCLSGSRLKLATGYFNLTQEYMDTLTHKCLAQCSIL
MAHPNANGFQGAKGPAGGIPAAYTLIAKSFYESLVRRKQNHRVNFFEYEK
PGWTYHAKGLWYYLPEAILPNLTLIGSSNFGERSVNRDLETQVCLVTANK
DLSQRLQAEADRLYDLSQTAEREIVQRPVPRWVQAVVRIFRNFF*

RE55033.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7718-PA 494 CG7718-PA 1..494 1..494 2574 100 Plus