BDGP Sequence Production Resources |
Search the DGRC for RE55111
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 551 |
Well: | 11 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9922-RA |
Protein status: | RE55111.pep: gold |
Preliminary Size: | 375 |
Sequenced Size: | 789 |
Gene | Date | Evidence |
---|---|---|
CG9922 | 2001-12-14 | Blastp of sequenced clone |
CG9922 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9922 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9922 | 2008-04-29 | Release 5.5 accounting |
CG9922 | 2008-08-15 | Release 5.9 accounting |
CG9922 | 2008-12-18 | 5.12 accounting |
789 bp (789 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071481
> RE55111.complete AATTAATTTAATACAGCGCTAAGTGCATATTGAAAATACACAATTTCCAA ATTCGAAATTACATAAAAAACTTCAAAAACTATTACAATAAAAGCCAAGC AAACACTCATAGATTATTAGTTAAATTATGTCGATTGTGTTATCGCTAGT AGTCCATCTCTAATCGCACGAGGTGAAGAAATCGCAAAGAATTTCGGAAC TTTTATTGAATTAAACATAAAAAAAAACAATTGAAAATGACGGAAGCAGC GGAAATCAACGGCAGAGAAGAAGTGGAGGATGACGAGCAGGATAAAAAGC AAAAGAAATCCGATGTGAAACGACATGACGACGGCGCCGCAGATTTGGAA CGTGTGACGGATTATGCCGAGGAAAAGGAGATCTCTGCGGACAATATATC CAGCGCCGTGGAGCAGTTTGGCAACCAGCGTAACAAGGAGAACGAACTGC GAGTAGCCAAAGAGAAGGAGCTCCAGAAGGTCCAAGTCAAGAAGGAGGAC ATTGAACTGATTATGAACGAGCTGCTGGTTAGCAAGGCGCATGCCGAGAA AGTGCTCCGCGAGCAGAGCGGCGATGTGGTGGCCGCCTTGGAAGCCATCA TCAGCAATTGAGGTGCTCGTGGAATCCGAAGCAATCCGCCGTCTGTTTCT TTTATGTAGCGTAACAACACACTGCTTTATTTGTACATTTATAAACTCTA GCGAAGAAAACAATACAAAACAAAAAGACTTTTAAGCCCACAAATGAGTG AGAGTGCTTACATCGTCTAAACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 9860735..9861076 | 342..1 | 1710 | 100 | Minus |
chr3R | 27901430 | chr3R | 9859929..9860189 | 773..513 | 1305 | 100 | Minus |
chr3R | 27901430 | chr3R | 9860355..9860462 | 512..405 | 540 | 100 | Minus |
chr3R | 27901430 | chr3R | 9860531..9860595 | 405..341 | 325 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 14035824..14036165 | 342..1 | 1710 | 100 | Minus |
3R | 32079331 | 3R | 14035016..14035278 | 775..513 | 1315 | 100 | Minus |
3R | 32079331 | 3R | 14035444..14035551 | 512..405 | 540 | 100 | Minus |
3R | 32079331 | 3R | 14035620..14035684 | 405..341 | 325 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 13776655..13776996 | 342..1 | 1710 | 100 | Minus |
3R | 31820162 | 3R | 13775847..13776109 | 775..513 | 1315 | 100 | Minus |
3R | 31820162 | 3R | 13776275..13776382 | 512..405 | 540 | 100 | Minus |
3R | 31820162 | 3R | 13776451..13776515 | 405..341 | 325 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9859929..9860189 | 513..773 | 100 | <- | Minus |
chr3R | 9860355..9860462 | 405..512 | 100 | <- | Minus |
chr3R | 9860532..9860593 | 343..404 | 100 | <- | Minus |
chr3R | 9860735..9861076 | 1..342 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9922-RA | 1..375 | 237..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9922-RA | 1..375 | 237..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9922-RA | 1..375 | 237..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9922-RA | 1..375 | 237..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9922-RA | 1..375 | 237..611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9922-RA | 1..773 | 1..773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9922-RA | 1..773 | 1..773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9922-RB | 234..1006 | 1..773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9922-RA | 1..773 | 1..773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9922-RB | 234..1006 | 1..773 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14035018..14035278 | 513..773 | 100 | <- | Minus |
3R | 14035444..14035551 | 405..512 | 100 | <- | Minus |
3R | 14035621..14035682 | 343..404 | 100 | <- | Minus |
3R | 14035824..14036165 | 1..342 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14035018..14035278 | 513..773 | 100 | <- | Minus |
3R | 14035444..14035551 | 405..512 | 100 | <- | Minus |
3R | 14035621..14035682 | 343..404 | 100 | <- | Minus |
3R | 14035824..14036165 | 1..342 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14035018..14035278 | 513..773 | 100 | <- | Minus |
3R | 14035444..14035551 | 405..512 | 100 | <- | Minus |
3R | 14035621..14035682 | 343..404 | 100 | <- | Minus |
3R | 14035824..14036165 | 1..342 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9860740..9861000 | 513..773 | 100 | <- | Minus |
arm_3R | 9861166..9861273 | 405..512 | 100 | <- | Minus |
arm_3R | 9861343..9861404 | 343..404 | 100 | <- | Minus |
arm_3R | 9861546..9861887 | 1..342 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13775849..13776109 | 513..773 | 100 | <- | Minus |
3R | 13776275..13776382 | 405..512 | 100 | <- | Minus |
3R | 13776452..13776513 | 343..404 | 100 | <- | Minus |
3R | 13776655..13776996 | 1..342 | 100 | Minus |
Translation from 236 to 610
> RE55111.pep MTEAAEINGREEVEDDEQDKKQKKSDVKRHDDGAADLERVTDYAEEKEIS ADNISSAVEQFGNQRNKENELRVAKEKELQKVQVKKEDIELIMNELLVSK AHAEKVLREQSGDVVAALEAIISN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18795-PA | 124 | GF18795-PA | 7..124 | 6..124 | 528 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21566-PA | 124 | GG21566-PA | 1..124 | 1..124 | 592 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18410-PA | 126 | GH18410-PA | 1..126 | 1..124 | 476 | 81.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9922-PB | 124 | CG9922-PB | 1..124 | 1..124 | 605 | 100 | Plus |
CG9922-PA | 124 | CG9922-PA | 1..124 | 1..124 | 605 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10786-PA | 126 | GI10786-PA | 9..126 | 6..124 | 462 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23316-PA | 127 | GL23316-PA | 1..127 | 1..124 | 479 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22126-PA | 127 | GA22126-PA | 1..127 | 1..124 | 488 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25892-PA | 124 | GM25892-PA | 1..124 | 1..124 | 606 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20462-PA | 124 | GD20462-PA | 1..124 | 1..124 | 606 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14384-PA | 126 | GJ14384-PA | 9..126 | 6..124 | 474 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22479-PA | 129 | GK22479-PA | 1..126 | 1..122 | 454 | 77 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10068-PA | 124 | GE10068-PA | 1..124 | 1..124 | 592 | 97.6 | Plus |
Translation from 236 to 610
> RE55111.hyp MTEAAEINGREEVEDDEQDKKQKKSDVKRHDDGAADLERVTDYAEEKEIS ADNISSAVEQFGNQRNKENELRVAKEKELQKVQVKKEDIELIMNELLVSK AHAEKVLREQSGDVVAALEAIISN*