Clone RE55124 Report

Search the DGRC for RE55124

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:551
Well:24
Vector:pFlc-1
Associated Gene/Transcriptea-RA
Protein status:RE55124.pep: gold
Preliminary Size:1429
Sequenced Size:1444

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4920 2002-01-01 Sim4 clustering to Release 2
CG4920 2003-01-01 Sim4 clustering to Release 3
CG4920 2003-07-07 Blastp of sequenced clone
ea 2008-04-29 Release 5.5 accounting
ea 2008-08-15 Release 5.9 accounting
ea 2008-12-18 5.12 accounting

Clone Sequence Records

RE55124.complete Sequence

1444 bp (1444 high quality bases) assembled on 2003-07-07

GenBank Submission: BT009978

> RE55124.complete
AGTTGTGCGCCAAGCTCAGCTTCGGCCTCTTCGTTTCACTCCGCTCCGCT
GTGGCACCTGGTATCGTCCATATTATCGCGCCGTTTATTTTGATAACTGC
TTCTGCGGTCGGTCTGTAATATTGTTTTTAGGCAAAACATTATCCGCAAA
CCACTGACGACGTCTTGAGAAAGGACTAACGAGGTCCGATTGCGCAACGA
AAATGCTAAAGCCATCGATTATCTGCCTCTTTTTGGGCATTTTGGCGAAA
TCATCGGCGGGCCAGTTCTACTTCCCCAACGAGGCGGCCCAGGTGCCCAA
CTATGGGCGCTGCATAACGCCGAATCGGGAGCGTGCGCTGTGCATCCATC
TGGAGGACTGCAAGTACCTATACGGCCTGCTGACCACCACCCCGCTCCGG
GACACGGACCGGCTTTACCTGAGTCGCAGCCAGTGCGGCTATACGAACGG
CAAGGTGCTCATCTGCTGTCCGGACCGCTACAGGGAGAGCTCATCGGAGA
CGACGCCACCGCCCAAGCCCAATGTAACCAGCAACAGCCTTCTGCCGCTG
CCAGGACAATGCGGCAACATCCTGTCCAATCGCATCTATGGCGGAATGAA
GACCAAGATCGACGAGTTCCCCTGGATGGCTCTAATTGAATACACCAAAA
GCCAGGGCAAAAAGGGTCACCATTGCGGCGGATCCTTGATCAGCACAAGA
TATGTGATCACAGCCTCGCATTGTGTCAACGGAAAGGCACTGCCCACCGA
CTGGCGGTTGTCCGGTGTTCGTTTGGGCGAATGGGACACCAACACTAATC
CCGATTGCGAAGTAGATGTGCGCGGCATGAAGGACTGCGCGCCACCGCAT
CTGGACGTGCCCGTGGAGCGTACTATACCCCATCCCGACTATATACCGGC
CTCCAAGAACCAGGTCAACGACATAGCCCTGCTGCGTCTGGCCCAGCAGG
TGGAGTACACCGACTTTGTGCGACCCATTTGCCTGCCTCTGGACGTCAAT
CTGCGGTCGGCCACCTTCGACGGCATCACCATGGACGTGGCCGGCTGGGG
CAAAACGGAGCAGCTGTCGGCCAGCAACCTCAAGCTGAAGGCAGCCGTGG
AGGGATTCCGGATGGATGAGTGCCAGAACGTCTACAGCAGCCAGGACATT
CTCCTCGAGGACACACAGATGTGTGCCGGCGGCAAGGAAGGCGTCGACTC
CTGTCGCGGTGACTCCGGGGGACCGCTCATCGGCTTGGACACCAACAAGG
TGAACACCTACTACTTCCTGGCCGGCGTCGTGTCATTTGGACCGACTCCG
TGCGGTCTGGCCGGATGGCCAGGAGTTTACACGCTGGTGGGCAAGTACGT
TGATTGGATACAAAACACTATTGAGTCCTGATTGTAAAATGTCATATTGT
AAATAAATTCGACTAACGGTTTCCGTTTAAAAAAAAAAAAAAAA

RE55124.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
ea-RA 1693 ea-RA 99..1531 1..1433 7165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11154257..11155034 651..1428 3800 99.2 Plus
chr3R 27901430 chr3R 11153806..11154193 264..651 1940 100 Plus
chr3R 27901430 chr3R 11153357..11153619 1..263 1300 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15329631..15330413 651..1433 3915 100 Plus
3R 32079331 3R 15329180..15329567 264..651 1940 100 Plus
3R 32079331 3R 15328731..15328993 1..263 1315 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15070462..15071244 651..1433 3915 100 Plus
3R 31820162 3R 15070011..15070398 264..651 1940 100 Plus
3R 31820162 3R 15069562..15069824 1..263 1315 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:31:36 has no hits.

RE55124.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:32:17 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11153357..11153619 1..263 99 -> Plus
chr3R 11153806..11154192 264..650 100 -> Plus
chr3R 11154257..11155034 651..1428 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:54 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 1..1179 203..1381 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:31:28 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 1..1179 203..1381 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:04:24 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 1..1179 203..1381 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:05:07 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 1..1179 203..1381 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:42 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 1..1179 203..1381 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:32:43 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 2..1429 1..1428 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:31:27 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 2..1429 1..1428 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:24 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 3..1430 1..1428 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:05:08 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 2..1429 1..1428 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:42 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 3..1430 1..1428 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:32:17 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15328731..15328993 1..263 100 -> Plus
3R 15329180..15329566 264..650 100 -> Plus
3R 15329631..15330408 651..1428 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:32:17 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15328731..15328993 1..263 100 -> Plus
3R 15329180..15329566 264..650 100 -> Plus
3R 15329631..15330408 651..1428 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:32:17 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15328731..15328993 1..263 100 -> Plus
3R 15329180..15329566 264..650 100 -> Plus
3R 15329631..15330408 651..1428 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:24 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11154453..11154715 1..263 100 -> Plus
arm_3R 11154902..11155288 264..650 100 -> Plus
arm_3R 11155353..11156130 651..1428 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:43:16 Download gff for RE55124.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15070462..15071239 651..1428 100   Plus
3R 15069562..15069824 1..263 100 -> Plus
3R 15070011..15070397 264..650 100 -> Plus

RE55124.pep Sequence

Translation from 202 to 1380

> RE55124.pep
MLKPSIICLFLGILAKSSAGQFYFPNEAAQVPNYGRCITPNRERALCIHL
EDCKYLYGLLTTTPLRDTDRLYLSRSQCGYTNGKVLICCPDRYRESSSET
TPPPKPNVTSNSLLPLPGQCGNILSNRIYGGMKTKIDEFPWMALIEYTKS
QGKKGHHCGGSLISTRYVITASHCVNGKALPTDWRLSGVRLGEWDTNTNP
DCEVDVRGMKDCAPPHLDVPVERTIPHPDYIPASKNQVNDIALLRLAQQV
EYTDFVRPICLPLDVNLRSATFDGITMDVAGWGKTEQLSASNLKLKAAVE
GFRMDECQNVYSSQDILLEDTQMCAGGKEGVDSCRGDSGGPLIGLDTNKV
NTYYFLAGVVSFGPTPCGLAGWPGVYTLVGKYVDWIQNTIES*

RE55124.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23198-PA 392 GF23198-PA 1..392 1..392 1953 91.1 Plus
Dana\GF18202-PA 393 GF18202-PA 26..392 34..391 938 48.5 Plus
Dana\GF16252-PA 399 GF16252-PA 23..399 27..392 802 44.3 Plus
Dana\GF17450-PA 360 GF17450-PA 31..360 38..392 663 39.9 Plus
Dana\GF17682-PA 394 GF17682-PA 33..393 37..391 637 41 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16913-PA 392 GG16913-PA 1..392 1..392 2052 97.2 Plus
Dere\GG12275-PA 392 GG12275-PA 1..392 2..392 981 48.4 Plus
Dere\GG11216-PA 400 GG11216-PA 27..399 28..391 817 43.9 Plus
Dere\GG11217-PA 407 GG11217-PA 27..407 28..392 784 43.6 Plus
Dere\GG16868-PA 360 GG16868-PA 7..360 7..392 662 38 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14281-PA 578 GH14281-PA 207..577 21..391 1665 80.9 Plus
Dgri\GH17456-PA 395 GH17456-PA 21..395 33..392 875 44.3 Plus
Dgri\GH17229-PA 387 GH17229-PA 11..387 21..392 846 44.4 Plus
Dgri\GH19111-PA 344 GH19111-PA 11..343 69..391 800 47.4 Plus
Dgri\GH18317-PA 379 GH18317-PA 4..378 37..391 625 38.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
ea-PA 392 CG4920-PA 1..392 1..392 2127 100 Plus
ea-PB 261 CG4920-PB 1..261 132..392 1416 100 Plus
MP1-PA 390 CG1102-PA 26..390 34..392 1000 51 Plus
MP1-PC 399 CG1102-PC 26..399 34..392 980 49.7 Plus
MP1-PE 400 CG1102-PE 26..400 34..392 979 49.6 Plus
SPE-PA 400 CG16705-PA 9..399 9..391 843 43.5 Plus
Sp7-PF 391 CG3066-PF 24..389 26..390 681 40.3 Plus
Sp7-PE 391 CG3066-PE 24..389 26..390 681 40.3 Plus
Sp7-PA 391 CG3066-PA 24..389 26..390 681 40.3 Plus
CG3505-PA 360 CG3505-PA 7..360 7..392 656 38 Plus
Ser7-PA 397 CG2045-PA 4..394 6..392 643 37.3 Plus
CG9733-PB 417 CG9733-PB 21..417 34..392 597 35.2 Plus
CG9733-PA 418 CG9733-PA 17..418 29..392 592 34.8 Plus
CG9737-PA 424 CG9737-PA 28..411 37..391 529 32.9 Plus
CG16710-PB 372 CG16710-PB 36..362 47..386 528 35.8 Plus
CG31220-PB 363 CG31220-PB 33..358 47..387 504 37.6 Plus
grass-PB 377 CG5896-PB 1..374 1..392 502 33.7 Plus
CG11313-PC 367 CG11313-PC 21..365 34..390 489 35.4 Plus
CG11313-PD 370 CG11313-PD 21..368 34..390 481 35.3 Plus
grass-PA 335 CG5896-PA 30..332 72..392 479 37 Plus
CG12133-PB 340 CG12133-PB 59..321 125..390 475 37.3 Plus
CG31219-PB 345 CG31219-PB 68..340 102..387 437 35.9 Plus
CG10232-PD 509 CG10232-PD 194..508 47..391 420 34.5 Plus
CG5909-PA 381 CG5909-PA 25..381 37..391 412 29.5 Plus
CG1299-PB 442 CG1299-PB 95..439 37..391 407 30.8 Plus
CG1299-PA 511 CG1299-PA 164..508 37..391 407 30.8 Plus
CG8870-PA 356 CG8870-PA 92..343 136..392 380 36 Plus
CG18754-PB 341 CG18754-PB 14..336 21..387 378 31.7 Plus
CG8172-PD 371 CG8172-PD 87..366 81..390 361 35.4 Plus
CG8172-PE 545 CG8172-PE 283..540 112..390 359 37.3 Plus
CG8172-PF 561 CG8172-PF 299..556 112..390 359 37.3 Plus
CG18754-PC 296 CG18754-PC 3..291 59..387 356 32.6 Plus
CG32260-PC 395 CG32260-PC 124..394 102..392 351 34.1 Plus
CG32260-PA 575 CG32260-PA 304..574 102..392 351 34.1 Plus
CG9372-PA 408 CG9372-PA 83..402 33..386 346 29.9 Plus
Hayan-PA 378 CG6361-PA 41..372 46..390 344 32 Plus
CG30289-PA 316 CG30289-PA 42..273 128..388 343 35.9 Plus
CG11836-PI 281 CG11836-PI 44..276 127..392 337 36.3 Plus
CG11836-PJ 333 CG11836-PJ 96..328 127..392 337 36.3 Plus
CG34409-PB 511 CG34409-PB 219..505 101..390 334 33.1 Plus
CG3355-PA 314 CG3355-PA 68..303 120..387 333 37.5 Plus
CG30414-PC 305 CG30414-PC 41..295 128..391 331 33.3 Plus
CG30414-PB 305 CG30414-PB 41..295 128..391 331 33.3 Plus
CG4914-PA 374 CG4914-PA 126..360 126..386 331 36 Plus
CG7432-PB 721 CG7432-PB 331..717 31..388 330 28.3 Plus
CG30087-PA 277 CG30087-PA 41..274 127..390 329 33.6 Plus
l(2)k05911-PC 639 CG31728-PC 367..639 100..391 329 31.7 Plus
CG18735-PA 364 CG18735-PA 74..315 120..389 327 35.6 Plus
CG30088-PB 281 CG30088-PB 24..278 108..392 324 32.1 Plus
CG30283-PB 273 CG30283-PB 25..267 110..390 320 32.4 Plus
CG30090-PA 291 CG30090-PA 25..278 113..391 318 33.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24877-PA 392 GI24877-PA 1..391 1..391 1759 82.6 Plus
Dmoj\GI22780-PA 412 GI22780-PA 28..411 33..391 872 44.5 Plus
Dmoj\GI10853-PA 285 GI10853-PA 3..284 108..391 830 53.2 Plus
Dmoj\GI10684-PA 372 GI10684-PA 30..372 38..392 665 39.4 Plus
Dmoj\GI24127-PA 389 GI24127-PA 23..389 37..392 658 40.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23240-PA 395 GL23240-PA 1..394 1..391 1836 86 Plus
Dper\GL12316-PA 391 GL12316-PA 26..390 34..391 949 49.9 Plus
Dper\GL13652-PA 401 GL13652-PA 27..401 26..392 851 44.4 Plus
Dper\GL12453-PA 383 GL12453-PA 25..382 37..391 649 39.1 Plus
Dper\GL24416-PA 370 GL24416-PA 48..370 47..392 645 40.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18526-PA 395 GA18526-PA 1..394 1..391 1832 85.8 Plus
Dpse\GA10711-PA 391 GA10711-PA 26..390 34..391 932 50.4 Plus
Dpse\GA14092-PA 403 GA14092-PA 30..403 27..392 843 44 Plus
Dpse\GA27509-PA 383 GA27509-PA 25..382 37..391 655 39.4 Plus
Dpse\GA15903-PA 383 GA15903-PA 25..382 37..391 654 39.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24220-PA 402 GM24220-PA 1..402 1..392 2019 94.8 Plus
Dsec\GM26516-PA 400 GM26516-PA 25..399 26..391 825 44.7 Plus
Dsec\GM26518-PA 406 GM26518-PA 7..406 5..392 767 42.1 Plus
Dsec\GM24177-PA 360 GM24177-PA 7..360 7..392 678 39 Plus
Dsec\GM10972-PA 391 GM10972-PA 22..390 24..391 659 40.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19011-PA 392 GD19011-PA 1..392 1..392 2084 99 Plus
Dsim\GD19715-PA 392 GD19715-PA 26..392 34..392 988 50.7 Plus
Dsim\GD21025-PA 400 GD21025-PA 25..399 26..391 837 45.2 Plus
Dsim\GD21026-PA 406 GD21026-PA 7..406 5..392 775 42.4 Plus
Dsim\GD18970-PA 360 GD18970-PA 7..360 7..392 675 38.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24520-PA 877 GJ24520-PA 503..876 18..391 1745 84.2 Plus
Dvir\GJ14460-PA 396 GJ14460-PA 22..396 34..392 943 48.5 Plus
Dvir\GJ22783-PA 401 GJ22783-PA 25..400 33..391 886 46.5 Plus
Dvir\GJ24354-PA 326 GJ24354-PA 4..326 59..392 642 41.5 Plus
Dvir\GJ10951-PA 386 GJ10951-PA 27..386 37..392 609 38.2 Plus
Dvir\GJ24520-PA 877 GJ24520-PA 199..504 94..390 306 32.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11130-PA 392 GK11130-PA 1..392 1..392 1808 82.7 Plus
Dwil\GK10951-PA 391 GK10951-PA 23..390 34..391 951 48.9 Plus
Dwil\GK13188-PA 395 GK13188-PA 28..395 34..392 769 42.7 Plus
Dwil\GK12018-PA 384 GK12018-PA 29..383 37..391 682 42.2 Plus
Dwil\GK12812-PA 360 GK12812-PA 3..360 2..392 650 38.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24296-PA 392 GE24296-PA 1..392 1..392 2008 94.9 Plus
Dyak\GE25404-PA 376 GE25404-PA 1..376 2..392 971 48.8 Plus
Dyak\GE10382-PA 400 GE10382-PA 25..399 26..391 838 44.7 Plus
Dyak\GE10383-PA 404 GE10383-PA 9..404 1..392 819 43.1 Plus
Dyak\GE24249-PA 360 GE24249-PA 7..360 7..392 663 37.7 Plus

RE55124.hyp Sequence

Translation from 202 to 1380

> RE55124.hyp
MLKPSIICLFLGILAKSSAGQFYFPNEAAQVPNYGRCITPNRERALCIHL
EDCKYLYGLLTTTPLRDTDRLYLSRSQCGYTNGKVLICCPDRYRESSSET
TPPPKPNVTSNSLLPLPGQCGNILSNRIYGGMKTKIDEFPWMALIEYTKS
QGKKGHHCGGSLISTRYVITASHCVNGKALPTDWRLSGVRLGEWDTNTNP
DCEVDVRGMKDCAPPHLDVPVERTIPHPDYIPASKNQVNDIALLRLAQQV
EYTDFVRPICLPLDVNLRSATFDGITMDVAGWGKTEQLSASNLKLKAAVE
GFRMDECQNVYSSQDILLEDTQMCAGGKEGVDSCRGDSGGPLIGLDTNKV
NTYYFLAGVVSFGPTPCGLAGWPGVYTLVGKYVDWIQNTIES*

RE55124.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
ea-PA 392 CG4920-PA 1..392 1..392 2127 100 Plus
ea-PB 261 CG4920-PB 1..261 132..392 1416 100 Plus
MP1-PA 390 CG1102-PA 26..390 34..392 1000 51 Plus
MP1-PC 399 CG1102-PC 26..399 34..392 980 49.7 Plus
SPE-PA 400 CG16705-PA 9..399 9..391 843 43.5 Plus