Clone RE55238 Report

Search the DGRC for RE55238

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:552
Well:38
Vector:pFlc-1
Associated Gene/Transcriptmys-RA
Protein status:RE55238.pep: gold
Preliminary Size:4102
Sequenced Size:4056

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1560 2002-01-01 Sim4 clustering to Release 2
CG1560 2002-04-26 Blastp of sequenced clone
CG1560 2003-01-01 Sim4 clustering to Release 3
mys 2008-04-29 Release 5.5 accounting
mys 2008-08-15 Release 5.9 accounting
mys 2008-12-18 5.12 accounting

Clone Sequence Records

RE55238.complete Sequence

4056 bp (4056 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113499

> RE55238.complete
ATTGACTGTTGTTCCACCCCCTGCTGACACCATCTGGTAACACTGAACAA
CAGACCAGATCCGCGGACAAAGCAAAGCACCGGCGCACAGAAGCGACAGA
GACAGAGCACACACAGCACCTGGCACATCCAAGGATATCCGATCCTCCTG
CATCCCGAATCATCCACAACCTGCACCAACCGCTAACCGCCAAAGCCATG
ATCCTCGAGAGAAACCGGAGGTGCCAGCTGGCCCTCCTCATGATCGCAAT
ACTGGCCGCCATCGCTGGACAAACGGATGCCCAGAAGGCGGCCAAACTGA
CGGCAGTGAGCACATGTGCATCGAAGGAAAAGTGTCACACCTGCATCCAG
ACAGAGGGTTGCGCCTGGTGCATGCAGCCGGACTTTAAGGGCCAGTCGCG
GTGCTACCAAAACACCAGCTCACTGTGTCCGGAGGAGTTCGCCTACAGTC
CGATAACAGTTGAGCAGATTCTAGTGAACAACAAACTAACGAATCAATAC
AAAGCTGAACTGGCGGCTGGTGGCGGCGGCTCCGCCATGTCCGGCAGCAG
CTCAAGCTCCTACTCGTCGAGTTCGAGCTCGTCGAGCTTCTACTCGCAGA
GCTCCTCGGGATCCAGTTCCGCCAGCGGATACGAAGAGTACTCTGCCGGC
GAAATTGTCCAAATCCAACCGCAGTCCATGCGACTCGCATTGCGCGTCAA
TGAGAAACACAACATCAAGATTAGCTATTCCCAGGCGGAGGGATATCCGG
TGGATCTCTACTACTTGATGGATCTCTCCAAATCTATGGAGGACGACAAG
GCCAAATTGTCTACGCTGGGCGACAAGTTGTCCGAGACCATGAAACGCAT
CACCAACAATTTCCATCTTGGTTTCGGTTCGTTTGTGGACAAGGTGCTCA
TGCCCTATGTCTCGACCATTCCCAAAAAACTCGAGCATCCATGCGAAAAC
TGCAAGGCTCCCTATGGTTACCAAAATCACATGCCACTCAACAATAACAC
CGAAAGCTTCTCTAACGAGGTGAAGAATGCCACAGTGTCGGGCAACTTGG
ATGCTCCCGAAGGAGGTTTCGATGCCATCATGCAGGCCATTGCCTGCCGA
TCGCAGATCGGTTGGCGGGAACAGGCTCGTCGGCTGTTGGTCTTCTCGAC
GGACGCAGGCTTCCATTATGCTGGCGATGGCAAATTGGGCGGTGTGATTG
CTCCAAACGATGGCGAGTGTCACTTGAGTCCCAAGGGCGAGTACACGCAT
TCGACGCTGCAGGATTATCCCAGTATTTCGCAGATCAACCAGAAGGTCAA
GGACAATGCCATCAATATTATCTTCGCCGTCACTGCCAGTCAGCTGTCTG
TCTACGAAAAGTTGGTGGAGCACATCCAGGGCTCTTCGGCGGCCAAGCTC
GATAACGATTCATCCAATGTGGTTGAATTGGTCAAGGAAGAATATCGCAA
AATCTCCTCTTCGGTGGAGATGAAGGACAACGCCACTGGAGATGTGAAGA
TCACCTATTTCTCGTCATGCCTGAGCAACGGACCCGAAGTGCAGACCTCT
AAGTGCGACAATCTGAAGGAGGGCCAGCAGGTGAGCTTCACAGCTCAGAT
TCAGTTGCTCAAGTGTCCCGAGGATCCGCGCGACTGGACACAGACGATCC
ACATCTCGCCCGTCGGCATCAACGAGGTCATGCAAATCCAGCTGACCATG
CTCTGCTCGTGTCCCTGCGAGAATCCCGGTTCAATTGGATATCAGGTGCA
GGCGAACAGCTGCAGCGGCCACGGCACCTCAATGTGCGGCATCTGCAATT
GCGATGATAGCTATTTCGGCAACAAATGCGAGTGCTCGGCAACGGATCTA
ACATCGAAATTCGCGAACGACACTAGCTGTCGAGCGGATAGCACATCGAC
GACGGACTGCTCTGGTCGGGGCCATTGCGTTTGCGGCGCCTGCGAATGCC
ACAAGCGACCAAATCCCATTGAGATCATATCCGGTAAACACTGCGAGTGC
GACAACTTCAGCTGCGAACGGAACAGGAACCAGTTGTGCTCGGGTCCCGA
TCACGGTACATGCGAGTGCGGCCGTTGCAAATGCAAGCCAGGCTGGACGG
GCTCCAATTGCGGCTGCCAGGAGTCCAACGATACATGTATGCCACCTGGA
GGCGGCGAGATCTGCTCCGGTCATGGTACCTGCGAATGCGGTGTCTGCAA
GTGTACGGTTAACGATCAGGGACGCTTCTCGGGCCGACATTGCGAGAAGT
GTCCAACTTGCTCGGGCAGGTGCCAGGAGCTGAAGGATTGTGTCCAGTGC
CAGATGTACAAGACGGGCGAGCTGAAGAACGGTGATGATTGCGCCAGGAA
CTGCACTCAATTTGTGCCCGTGGGCGTGGAAAAGGTGGAGATCGATGAGA
CCAAGGACGAGCAGATGTGCAAATTCTTCGACGAGGACGACTGCAAGTTT
ATGTTCAAGTACAGCGAACAGGGTGAGCTGCATGTGTATGCCCAGGAGAA
TAAGGAGTGTCCGGCCAAGGTTTTCATGTTGGGCATCGTTATGGGCGTAA
TTGCCGCCATTGTCCTGGTCGGTCTGGCCATTCTCCTGCTGTGGAAGCTG
CTCACTACGATCCACGATCGGCGGGAGTTCGCTCGCTTCGAGAAGGAGCG
CATGAACGCCAAGTGGGATACGGGCGAGAATCCCATCTACAAGCAGGCCA
CGTCCACCTTCAAGAACCCCATGTATGCGGGCAAATAGATTCGCTAACTA
ACTAAACATTAGGGAATTATAACTAGTGTCGTTCCACGACCACTGTCTGT
GCTTGAACCGGAAATCAGAAGGAACCCCAACCAGTCAAACTTAAACACCA
GCAACAAATCCGCACCACCAACCAACCAACCAACCAACCAATCAATCTTC
AGTACCGACTCCGACTCCGAACCACTGAATACATCGACGAAGCTGCTTTG
CCCGGGTGCAAAACCACTGAAGTCAACTGCCATTGAAACGCGTTCTAAAC
TAAGTCAGCCCTATATATACATATATATGCATATTTATATATACATTTAC
ACAAGAAACCCCGCCATGGGGCAGCCTTTATACATTGCGTATACTTAACG
AGCAAACGATTTGTGCCTTGCGACATATTTTAGACTAAATCTATACGTAT
GTATATGTGTATACAAACAAGTAAGCAGACAACGCACAGCAACAACGCGG
AGCGAAGAATCGGAAAAAAAATTGGAAAAACAAAAAAATTAAACCAGCCA
AGAAATGAACTACGAACGATAGTTAAGATTAATGATTTTTGTATTCTTTT
TTTCGTACCAATAGTATCCAAGCCAGCGCCAGAATTTGTATTTTATTTTA
CTCCTAATATGTAATTGCTGTTTTGTGTTTTTTATCGACCTAATTCTAAT
TATTTTCATTGAGCCCCATTTATTATTAACGAGAAGAGCCACTGCAATAT
AGCTGTATGTATTCAAAAGTCAGAATTGGGATACTTAACTAATCTGCTAC
CCTCCCAAAACGGTCGTCCTTCGCAATGCCAAACCCCCCAACGTCTTAAT
GTTTTTCTATTGTTTTTTTAAAGCTAACTTTACAATTAATATTTAAGCAA
TTAACATTTAAGCTTGTAATTGTTAATTTCAAAATGCAAGAGTGCCCCGG
GTACGTTTTTGTTTTTCTATGAAATCTTTTCATTTTTATTTTTGTATGTT
TTATTTATGGAAAACGAAAGCGTGGCAACAGGGGAAATTGTCCCTTGTGT
GTGTGTTTTATTTAACTGAATTTCGATCATTAATAGTAAATTAATACTAC
TATATAAATATATATTTTTTGCCATTTGTACTGATTACTGATTAACATTT
AAAGTAATACAAAACCAAAACGAAATGAAATGAAACTTTTGTATAAAAAA
AAAAGAAAACATTTTGAGTAATTTTATTGAATGATAAAACAATACAAAAA
TAAGGTGGAAACACTGTGGCAATATGAAAAAGATGTGGAAATTAAATTGT
TTGACGCTAATTTTAGTAAAATAAATAAAAAGAGAAATACAAAAAAAAAA
AAAAAA

RE55238.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
mys-RA 4133 mys-RA 91..4131 1..4041 20205 100 Plus
mys.i 4229 mys.i 266..4227 80..4041 19810 100 Plus
mys.j 4125 mys.j 1097..4125 1012..4040 15145 100 Plus
mys.j 4125 mys.j 1..1013 1..1013 5065 100 Plus
mys.i 4229 mys.i 42..120 1..79 395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7959427..7960651 1449..2673 6005 99.3 Plus
chrX 22417052 chrX 7960736..7961497 2672..3434 3630 99 Plus
chrX 22417052 chrX 7955721..7956345 80..704 3035 99 Plus
chrX 22417052 chrX 7961497..7962069 3468..4040 2850 99.8 Plus
chrX 22417052 chrX 7958929..7959363 1014..1448 2100 98.9 Plus
chrX 22417052 chrX 7956414..7956642 700..928 1130 99.6 Plus
chrX 22417052 chrX 7957320..7957404 929..1013 425 100 Plus
chrX 22417052 chrX 7953523..7953601 1..79 395 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8068869..8070238 2672..4041 6850 100 Plus
X 23542271 X 8067560..8068784 1449..2673 6125 100 Plus
X 23542271 X 8063840..8064464 80..704 3110 99.8 Plus
X 23542271 X 8067062..8067496 1014..1448 2175 100 Plus
X 23542271 X 8064533..8064761 700..928 1145 100 Plus
X 23542271 X 8065448..8065532 929..1013 425 100 Plus
X 23542271 X 8061647..8061725 1..79 395 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8076967..8078336 2672..4041 6850 100 Plus
X 23527363 X 8075658..8076882 1449..2673 6125 100 Plus
X 23527363 X 8071938..8072562 80..704 3110 99.8 Plus
X 23527363 X 8075160..8075594 1014..1448 2175 100 Plus
X 23527363 X 8072631..8072859 700..928 1145 100 Plus
X 23527363 X 8073546..8073630 929..1013 425 100 Plus
X 23527363 X 8069745..8069823 1..79 395 100 Plus
Blast to na_te.dros performed 2019-03-15 16:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 1656..1741 3863..3779 139 67 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 9538..9623 3863..3779 139 67 Minus

RE55238.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:33:33 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7953523..7953601 1..79 100 -> Plus
chrX 7955721..7956340 80..699 99 -> Plus
chrX 7956414..7956642 700..928 99 -> Plus
chrX 7957320..7957404 929..1013 100 -> Plus
chrX 7958929..7959363 1014..1448 98 -> Plus
chrX 7959427..7960650 1449..2672 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:57 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 1..2541 198..2738 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:55:51 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 1..2541 198..2738 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:04:28 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 1..2541 198..2738 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:49:13 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 1..2541 198..2738 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:50 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 1..2541 198..2738 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:35:11 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 1..4017 1..4017 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:55:51 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 1..4017 1..4017 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:28 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 3..4019 1..4017 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:49:13 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 1..4017 1..4017 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:50 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
mys-RA 3..4019 1..4017 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:33 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
X 8063840..8064459 80..699 100 -> Plus
X 8064533..8064761 700..928 100 -> Plus
X 8065448..8065532 929..1013 100 -> Plus
X 8067062..8067496 1014..1448 100 -> Plus
X 8067560..8068783 1449..2672 100 -> Plus
X 8068870..8070214 2673..4017 100   Plus
X 8061647..8061725 1..79 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:33 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
X 8063840..8064459 80..699 100 -> Plus
X 8064533..8064761 700..928 100 -> Plus
X 8065448..8065532 929..1013 100 -> Plus
X 8067062..8067496 1014..1448 100 -> Plus
X 8067560..8068783 1449..2672 100 -> Plus
X 8068870..8070214 2673..4017 100   Plus
X 8061647..8061725 1..79 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:33 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
X 8063840..8064459 80..699 100 -> Plus
X 8064533..8064761 700..928 100 -> Plus
X 8065448..8065532 929..1013 100 -> Plus
X 8067062..8067496 1014..1448 100 -> Plus
X 8067560..8068783 1449..2672 100 -> Plus
X 8068870..8070214 2673..4017 100   Plus
X 8061647..8061725 1..79 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:28 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7955680..7955758 1..79 100 -> Plus
arm_X 7957873..7958492 80..699 100 -> Plus
arm_X 7958566..7958794 700..928 100 -> Plus
arm_X 7959481..7959565 929..1013 100 -> Plus
arm_X 7961095..7961529 1014..1448 100 -> Plus
arm_X 7961593..7962816 1449..2672 100 -> Plus
arm_X 7962903..7964247 2673..4017 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:21:01 Download gff for RE55238.complete
Subject Subject Range Query Range Percent Splice Strand
X 8071938..8072557 80..699 100 -> Plus
X 8072631..8072859 700..928 100 -> Plus
X 8073546..8073630 929..1013 100 -> Plus
X 8075160..8075594 1014..1448 100 -> Plus
X 8075658..8076881 1449..2672 100 -> Plus
X 8076968..8078312 2673..4017 100   Plus
X 8069745..8069823 1..79 100 -> Plus

RE55238.pep Sequence

Translation from 197 to 2737

> RE55238.pep
MILERNRRCQLALLMIAILAAIAGQTDAQKAAKLTAVSTCASKEKCHTCI
QTEGCAWCMQPDFKGQSRCYQNTSSLCPEEFAYSPITVEQILVNNKLTNQ
YKAELAAGGGGSAMSGSSSSSYSSSSSSSSFYSQSSSGSSSASGYEEYSA
GEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSMEDD
KAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKKLEHPCE
NCKAPYGYQNHMPLNNNTESFSNEVKNATVSGNLDAPEGGFDAIMQAIAC
RSQIGWREQARRLLVFSTDAGFHYAGDGKLGGVIAPNDGECHLSPKGEYT
HSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYEKLVEHIQGSSAAK
LDNDSSNVVELVKEEYRKISSSVEMKDNATGDVKITYFSSCLSNGPEVQT
SKCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLT
MLCSCPCENPGSIGYQVQANSCSGHGTSMCGICNCDDSYFGNKCECSATD
LTSKFANDTSCRADSTSTTDCSGRGHCVCGACECHKRPNPIEIISGKHCE
CDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGCQESNDTCMPP
GGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGRCQELKDCVQ
CQMYKTGELKNGDDCARNCTQFVPVGVEKVEIDETKDEQMCKFFDEDDCK
FMFKYSEQGELHVYAQENKECPAKVFMLGIVMGVIAAIVLVGLAILLLWK
LLTTIHDRREFARFEKERMNAKWDTGENPIYKQATSTFKNPMYAGK*

RE55238.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21297-PA 864 GF21297-PA 170..864 152..846 3162 83.9 Plus
Dana\GF21041-PA 929 GF21041-PA 149..915 70..841 960 30.8 Plus
Dana\GF23464-PA 3407 GF23464-PA 1065..1353 377..684 186 26.2 Plus
Dana\GF19389-PA 3019 GF19389-PA 591..763 522..698 167 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19682-PA 843 GG19682-PA 1..843 1..846 3955 91.7 Plus
Dere\GG21271-PA 799 GG21271-PA 33..785 40..841 928 30.2 Plus
Dere\GG13183-PA 2729 GG13183-PA 387..675 377..684 187 26.2 Plus
Dere\GG17713-PA 3011 GG17713-PA 595..767 522..698 166 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24161-PA 895 GH24161-PA 68..895 40..846 3063 71.5 Plus
Dgri\GH10404-PA 778 GH10404-PA 13..764 42..841 1027 31.2 Plus
Dgri\GH14817-PA 3357 GH14817-PA 1151..1303 501..684 177 32.3 Plus
Dgri\GH17559-PA 3033 GH17559-PA 619..791 522..698 174 28.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
mys-PD 846 CG1560-PD 1..846 1..846 4573 100 Plus
mys-PC 846 CG1560-PC 1..846 1..846 4573 100 Plus
mys-PA 846 CG1560-PA 1..846 1..846 4573 100 Plus
mys-PB 846 CG1560-PB 1..846 1..846 4472 98 Plus
Itgbn-PB 799 CG1762-PB 33..785 40..841 1030 31 Plus
Itgbn-PA 799 CG1762-PA 33..785 40..841 1030 31 Plus
Ten-m-PB 2731 CG5723-PB 516..717 520..721 240 31.1 Plus
Ten-m-PD 3297 CG5723-PD 1073..1274 520..721 240 31.1 Plus
Ten-m-PE 3349 CG5723-PE 1073..1274 520..721 240 31.1 Plus
Ten-a-PG 2902 CG42338-PG 493..661 522..721 210 29.1 Plus
Ten-a-PN 3004 CG42338-PN 595..763 522..721 210 29.1 Plus
Ten-a-PK 3004 CG42338-PK 595..763 522..721 210 29.1 Plus
Ten-a-PI 3004 CG42338-PI 595..763 522..721 210 29.1 Plus
Ten-a-PF 3004 CG42338-PF 595..763 522..721 210 29.1 Plus
Ten-a-PD 3004 CG32659-PA 595..763 522..721 210 29.1 Plus
Ten-a-PM 3013 CG42338-PM 595..763 522..721 210 29.1 Plus
Ten-a-PL 3013 CG42338-PL 595..763 522..721 210 29.1 Plus
Ten-a-PE 3378 CG42338-PE 969..1137 522..721 210 29.1 Plus
Ten-a-PP 3378 CG42338-PP 969..1137 522..721 210 29.1 Plus
Ten-a-PO 3387 CG42338-PO 969..1137 522..721 210 29.1 Plus
Ten-a-PG 2902 CG42338-PG 451..628 563..719 177 30.3 Plus
Ten-a-PN 3004 CG42338-PN 553..730 563..719 177 30.3 Plus
Ten-a-PK 3004 CG42338-PK 553..730 563..719 177 30.3 Plus
Ten-a-PI 3004 CG42338-PI 553..730 563..719 177 30.3 Plus
Ten-a-PF 3004 CG42338-PF 553..730 563..719 177 30.3 Plus
Ten-a-PD 3004 CG32659-PA 553..730 563..719 177 30.3 Plus
Ten-a-PM 3013 CG42338-PM 553..730 563..719 177 30.3 Plus
Ten-a-PL 3013 CG42338-PL 553..730 563..719 177 30.3 Plus
Ten-a-PE 3378 CG42338-PE 927..1104 563..719 177 30.3 Plus
Ten-a-PP 3378 CG42338-PP 927..1104 563..719 177 30.3 Plus
Ten-a-PO 3387 CG42338-PO 927..1104 563..719 177 30.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15296-PA 859 GI15296-PA 46..859 40..846 3095 72.5 Plus
Dmoj\GI23240-PA 809 GI23240-PA 110..794 152..841 986 34.4 Plus
Dmoj\GI13922-PA 2740 GI13922-PA 398..686 377..684 182 26.2 Plus
Dmoj\GI21638-PA 3002 GI21638-PA 605..777 522..698 174 28.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26731-PA 617 GL26731-PA 3..596 2..592 2171 71.1 Plus
Dper\GL25882-PA 767 GL25882-PA 67..753 149..841 946 32.7 Plus
Dper\GL21029-PA 937 GL21029-PA 71..359 377..684 172 25.9 Plus
Dper\GL25136-PA 2840 GL25136-PA 638..755 522..669 168 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23031-PA 856 GA23031-PA 3..856 2..846 3352 75.6 Plus
Dpse\GA14581-PA 774 GA14581-PA 74..760 149..841 944 32.7 Plus
Dpse\GA25171-PB 3322 GA25171-PB 1107..1268 520..684 182 31.3 Plus
Dpse\GA17047-PA 2902 GA17047-PA 500..672 522..698 174 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11222-PA 838 GM11222-PA 1..838 1..846 4083 93.3 Plus
Dsec\GM23386-PA 800 GM23386-PA 102..786 152..841 975 33.3 Plus
Dsec\GM22094-PA 3372 GM22094-PA 1157..1318 520..684 187 32.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16875-PA 838 GD16875-PA 1..838 1..846 4137 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17000-PA 865 GJ17000-PA 34..865 20..846 3019 71.1 Plus
Dvir\GJ23751-PA 791 GJ23751-PA 18..777 30..841 1000 30.9 Plus
Dvir\GJ13712-PA 2738 GJ13712-PA 523..684 520..684 177 31.3 Plus
Dvir\GJ16871-PA 2957 GJ16871-PA 559..731 522..698 173 28.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25655-PA 842 GK25655-PA 4..842 11..846 3170 73.7 Plus
Dwil\GK24312-PA 767 GK24312-PA 72..753 154..841 1001 33.4 Plus
Dwil\GK17453-PA 3245 GK17453-PA 1039..1191 501..684 186 32.8 Plus
Dwil\GK16488-PA 3076 GK16488-PA 659..776 522..669 167 33.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15757-PA 843 GE15757-PA 1..843 1..846 3939 91.7 Plus
Dyak\GE12889-PA 799 GE12889-PA 102..785 152..841 956 33.2 Plus
Dyak\GE19509-PA 3751 GE19509-PA 1536..1697 520..684 188 32.4 Plus
Dyak\GE16501-PA 3017 GE16501-PA 600..772 522..698 166 27.7 Plus

RE55238.hyp Sequence

Translation from 197 to 2737

> RE55238.hyp
MILERNRRCQLALLMIAILAAIAGQTDAQKAAKLTAVSTCASKEKCHTCI
QTEGCAWCMQPDFKGQSRCYQNTSSLCPEEFAYSPITVEQILVNNKLTNQ
YKAELAAGGGGSAMSGSSSSSYSSSSSSSSFYSQSSSGSSSASGYEEYSA
GEIVQIQPQSMRLALRVNEKHNIKISYSQAEGYPVDLYYLMDLSKSMEDD
KAKLSTLGDKLSETMKRITNNFHLGFGSFVDKVLMPYVSTIPKKLEHPCE
NCKAPYGYQNHMPLNNNTESFSNEVKNATVSGNLDAPEGGFDAIMQAIAC
RSQIGWREQARRLLVFSTDAGFHYAGDGKLGGVIAPNDGECHLSPKGEYT
HSTLQDYPSISQINQKVKDNAINIIFAVTASQLSVYEKLVEHIQGSSAAK
LDNDSSNVVELVKEEYRKISSSVEMKDNATGDVKITYFSSCLSNGPEVQT
SKCDNLKEGQQVSFTAQIQLLKCPEDPRDWTQTIHISPVGINEVMQIQLT
MLCSCPCENPGSIGYQVQANSCSGHGTSMCGICNCDDSYFGNKCECSATD
LTSKFANDTSCRADSTSTTDCSGRGHCVCGACECHKRPNPIEIISGKHCE
CDNFSCERNRNQLCSGPDHGTCECGRCKCKPGWTGSNCGCQESNDTCMPP
GGGEICSGHGTCECGVCKCTVNDQGRFSGRHCEKCPTCSGRCQELKDCVQ
CQMYKTGELKNGDDCARNCTQFVPVGVEKVEIDETKDEQMCKFFDEDDCK
FMFKYSEQGELHVYAQENKECPAKVFMLGIVMGVIAAIVLVGLAILLLWK
LLTTIHDRREFARFEKERMNAKWDTGENPIYKQATSTFKNPMYAGK*

RE55238.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
mys-PD 846 CG1560-PD 1..846 1..846 4573 100 Plus
mys-PC 846 CG1560-PC 1..846 1..846 4573 100 Plus
mys-PA 846 CG1560-PA 1..846 1..846 4573 100 Plus
mys-PB 846 CG1560-PB 1..846 1..846 4472 98 Plus
Itgbetanu-PB 799 CG1762-PB 33..785 40..841 1030 31 Plus