BDGP Sequence Production Resources |
Search the DGRC for RE55422
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 554 |
Well: | 22 |
Vector: | pFlc-1 |
Associated Gene/Transcript | nudC-RA |
Protein status: | RE55422.pep: gold |
Preliminary Size: | 1047 |
Sequenced Size: | 1249 |
Gene | Date | Evidence |
---|---|---|
CG9710 | 2001-12-14 | Blastp of sequenced clone |
CG9710 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9710 | 2003-01-01 | Sim4 clustering to Release 3 |
nudC | 2008-04-29 | Release 5.5 accounting |
nudC | 2008-08-15 | Release 5.9 accounting |
nudC | 2008-12-18 | 5.12 accounting |
1249 bp (1249 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071485
> RE55422.complete GAGGTCACATTATTTCTACATGTGCCGGGTCGGCAGCTAAACTTCAGATA AAAAAACCAAACGAATCGAAGCGTCCAGAAACAAACGAAATCTAATTCAA AACCAGTACAAATACTCCAAACCATGGCTGCTGAGGAGGGAAAGTTTGAC AACATACTGCTGGCCGTGGCCGAGAAGCATCACGGTGGCGTGCCCGAGTT CCTTGGCACTTTGGCCAGTTTTCTGCGCCGCAAGACCGACTTCTTCACGG GAGCCAAGCAGACGGAGTGGGAGAAGCTGCTGCTGGATGTCTTCAACAAG GAGTCCAAGCTGGCCGTAACTGAAAACTACGAAAAGATAAAGGCTCGCGA AGCTTCCCAGCGCCTAAAGGCGGAGAAGGAGAGAGCCGAAAGGAAGGCCC GCAAGCAGGAGATTGACGATAATAAAATATGTGATATCACTGACGAAGAG GCAGCGGCCATTATCAAGGAGGAGGAGACCAAAAAACGCCAGCAGCTGCT GGATAGCGCTGGTGGAGAGCCATCTGCCTCGAACCGAGATGGCATCTCCA AGCCCATCGAGAAAGTGGACGATGAATCCGATAAGAGTGAGCTGGGTAAG CTGATGCCGAATGCAGGCAATGGCTGCACCTTGGAAAACTACACCTGGAC CCAAACTCTGGAGGAGGTGGAGCTCAAGATTCCGTTCAACTTAACATTCG GTCTACGCGCCCGTGATCTAGTGATCAGTATTGGTAAGAAGTCGCTGAAG GTGGGCATCAAAGGTCAAACGCCCATCATCGATGGCGAACTGTGCGGCGA GGTGAAGACGGAGGAGTCCGTGTGGGTCTTGCAAGACAGCAAAACCGTGA TGATCACTCTTGATAAGATCAATAAGATGAACTGGTGGAGCCGCCTGGTC ACAACCGATCCAGAGATCTCGACGCGCAAGATCAATCCAGAGTCTTCCAA GCTTTCTGATCTGGATGGGGAGACTCGCAGTATGGTGGAGAAGATGATGT ATGATCAGCGACAGAAGGAGTTGGGTCTTCCCACCAGCGAGGATCGCAAA AAACAGGACATACTTGAGAAATTTAAGCAACAGCATCCTGAGATGGACTT CTCCAAGTGTAAATTCAATTAATCTAACATTCTCAACTTAACTTGTAAAC TTTCGATTTCGCACTCTTGTCACTTTTACACATTTAAATGTAAATCTTTT TCATTTTCCAACCACACAATAAACTAATGCAAGCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16808435..16808834 | 671..1070 | 1985 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 16798244..16798529 | 197..482 | 1430 | 100 | Plus |
chr3L | 24539361 | chr3L | 16797974..16798170 | 2..198 | 970 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 16798719..16798908 | 483..672 | 950 | 100 | Plus |
chr3L | 24539361 | chr3L | 16808898..16809062 | 1071..1234 | 775 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16818905..16819304 | 671..1070 | 2000 | 100 | Plus |
3L | 28110227 | 3L | 16808693..16808978 | 197..482 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 16808423..16808619 | 2..198 | 985 | 100 | Plus |
3L | 28110227 | 3L | 16809168..16809357 | 483..672 | 950 | 100 | Plus |
3L | 28110227 | 3L | 16819368..16819536 | 1071..1238 | 795 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16812005..16812404 | 671..1070 | 2000 | 100 | Plus |
3L | 28103327 | 3L | 16801793..16802078 | 197..482 | 1430 | 100 | Plus |
3L | 28103327 | 3L | 16801523..16801719 | 2..198 | 985 | 100 | Plus |
3L | 28103327 | 3L | 16802268..16802457 | 483..672 | 950 | 100 | Plus |
3L | 28103327 | 3L | 16812468..16812636 | 1071..1238 | 805 | 99.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16797973..16798170 | 1..198 | 98 | -> | Plus |
chr3L | 16798246..16798529 | 199..482 | 100 | -> | Plus |
chr3L | 16798719..16798908 | 483..672 | 100 | -> | Plus |
chr3L | 16808437..16808834 | 673..1070 | 99 | -> | Plus |
chr3L | 16808898..16809062 | 1071..1234 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudC-RA | 1..999 | 124..1122 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudC-RA | 1..999 | 124..1122 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudC-RA | 1..999 | 124..1122 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudC-RA | 1..999 | 124..1122 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudC-RA | 1..999 | 124..1122 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudC-RA | 2..1235 | 2..1234 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudC-RA | 2..1235 | 2..1234 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudC-RA | 4..1238 | 1..1234 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudC-RA | 2..1235 | 2..1234 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nudC-RA | 4..1238 | 1..1234 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16808422..16808619 | 1..198 | 99 | -> | Plus |
3L | 16808695..16808978 | 199..482 | 100 | -> | Plus |
3L | 16809168..16809357 | 483..672 | 100 | -> | Plus |
3L | 16818907..16819304 | 673..1070 | 100 | -> | Plus |
3L | 16819368..16819532 | 1071..1234 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16808422..16808619 | 1..198 | 99 | -> | Plus |
3L | 16808695..16808978 | 199..482 | 100 | -> | Plus |
3L | 16809168..16809357 | 483..672 | 100 | -> | Plus |
3L | 16818907..16819304 | 673..1070 | 100 | -> | Plus |
3L | 16819368..16819532 | 1071..1234 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16808422..16808619 | 1..198 | 99 | -> | Plus |
3L | 16808695..16808978 | 199..482 | 100 | -> | Plus |
3L | 16809168..16809357 | 483..672 | 100 | -> | Plus |
3L | 16818907..16819304 | 673..1070 | 100 | -> | Plus |
3L | 16819368..16819532 | 1071..1234 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16802268..16802457 | 483..672 | 100 | -> | Plus |
arm_3L | 16801522..16801719 | 1..198 | 99 | -> | Plus |
arm_3L | 16801795..16802078 | 199..482 | 100 | -> | Plus |
arm_3L | 16812007..16812404 | 673..1070 | 100 | -> | Plus |
arm_3L | 16812468..16812632 | 1071..1234 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16801795..16802078 | 199..482 | 100 | -> | Plus |
3L | 16802268..16802457 | 483..672 | 100 | -> | Plus |
3L | 16812007..16812404 | 673..1070 | 100 | -> | Plus |
3L | 16812468..16812632 | 1071..1234 | 99 | Plus | |
3L | 16801522..16801719 | 1..198 | 99 | -> | Plus |
Translation from 123 to 1121
> RE55422.pep MAAEEGKFDNILLAVAEKHHGGVPEFLGTLASFLRRKTDFFTGAKQTEWE KLLLDVFNKESKLAVTENYEKIKAREASQRLKAEKERAERKARKQEIDDN KICDITDEEAAAIIKEEETKKRQQLLDSAGGEPSASNRDGISKPIEKVDD ESDKSELGKLMPNAGNGCTLENYTWTQTLEEVELKIPFNLTFGLRARDLV ISIGKKSLKVGIKGQTPIIDGELCGEVKTEESVWVLQDSKTVMITLDKIN KMNWWSRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKEL GLPTSEDRKKQDILEKFKQQHPEMDFSKCKFN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23933-PA | 332 | GF23933-PA | 1..332 | 1..332 | 1420 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13580-PA | 332 | GG13580-PA | 1..332 | 1..332 | 1602 | 90.4 | Plus |
Dere\GG16760-PA | 306 | GG16760-PA | 109..258 | 144..295 | 182 | 33.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16226-PA | 334 | GH16226-PA | 1..334 | 1..332 | 1413 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nudC-PB | 332 | CG9710-PB | 1..332 | 1..332 | 1703 | 100 | Plus |
nudC-PA | 332 | CG9710-PA | 1..332 | 1..332 | 1703 | 100 | Plus |
CG31251-PA | 306 | CG31251-PA | 23..258 | 26..295 | 194 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13372-PA | 334 | GI13372-PA | 1..334 | 1..332 | 1428 | 79.6 | Plus |
Dmoj\GI13864-PA | 305 | GI13864-PA | 110..257 | 142..295 | 182 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16069-PA | 336 | GL16069-PA | 1..336 | 1..332 | 1446 | 81 | Plus |
Dper\GL21703-PA | 297 | GL21703-PA | 122..268 | 166..309 | 164 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21982-PA | 336 | GA21982-PA | 1..336 | 1..332 | 1446 | 81 | Plus |
Dpse\GA26376-PA | 294 | GA26376-PA | 119..265 | 166..309 | 159 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25659-PA | 332 | GM25659-PA | 1..332 | 1..332 | 1679 | 95.8 | Plus |
Dsec\GM15349-PA | 306 | GM15349-PA | 103..258 | 138..295 | 187 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14666-PA | 332 | GD14666-PA | 1..332 | 1..332 | 1662 | 95.2 | Plus |
Dsim\GD15097-PA | 298 | GD15097-PA | 101..250 | 144..295 | 180 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13202-PA | 334 | GJ13202-PA | 1..334 | 1..332 | 1463 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12498-PA | 326 | GK12498-PA | 1..326 | 1..332 | 1321 | 75.5 | Plus |
Dwil\GK17436-PA | 315 | GK17436-PA | 1..315 | 1..332 | 1247 | 73.5 | Plus |
Dwil\GK23802-PA | 324 | GK23802-PA | 1..324 | 1..331 | 1127 | 62.8 | Plus |
Dwil\GK22475-PA | 250 | GK22475-PA | 1..250 | 1..312 | 596 | 43.3 | Plus |
Dwil\GK13789-PA | 297 | GK13789-PA | 124..252 | 166..295 | 149 | 31.9 | Plus |
Translation from 123 to 1121
> RE55422.hyp MAAEEGKFDNILLAVAEKHHGGVPEFLGTLASFLRRKTDFFTGAKQTEWE KLLLDVFNKESKLAVTENYEKIKAREASQRLKAEKERAERKARKQEIDDN KICDITDEEAAAIIKEEETKKRQQLLDSAGGEPSASNRDGISKPIEKVDD ESDKSELGKLMPNAGNGCTLENYTWTQTLEEVELKIPFNLTFGLRARDLV ISIGKKSLKVGIKGQTPIIDGELCGEVKTEESVWVLQDSKTVMITLDKIN KMNWWSRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKEL GLPTSEDRKKQDILEKFKQQHPEMDFSKCKFN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nudC-PB | 332 | CG9710-PB | 1..332 | 1..332 | 1703 | 100 | Plus |
nudC-PA | 332 | CG9710-PA | 1..332 | 1..332 | 1703 | 100 | Plus |
CG31251-PA | 306 | CG31251-PA | 23..258 | 26..295 | 194 | 27.4 | Plus |