Clone RE55430 Report

Search the DGRC for RE55430

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:554
Well:30
Vector:pFlc-1
Associated Gene/TranscriptSec15-RA
Protein status:RE55430.pep: gold
Preliminary Size:2301
Sequenced Size:2835

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7034 2002-01-01 Sim4 clustering to Release 2
CG7034 2003-01-01 Sim4 clustering to Release 3
CG7034 2003-01-22 Blastp of sequenced clone
sec15 2008-04-29 Release 5.5 accounting
sec15 2008-08-15 Release 5.9 accounting
sec15 2008-12-18 5.12 accounting

Clone Sequence Records

RE55430.complete Sequence

2835 bp (2835 high quality bases) assembled on 2003-01-22

GenBank Submission: BT003492

> RE55430.complete
AAGTCGGCGAAATAATTGCTCATTAAAGTTTGGTAAAAAGTTGTTTAGAA
GAGAAAAAAGAGCGTTATAAGATGTCCAAAGTGACCGTGCAAGACATTGA
GGCGGTGGACGACTACTGGGGACCAACATTCCGTTCGATCCTTGAAGGCA
ACAACACTAAGCAGATTGGCGACCAACTGGAGCAGCGGATACGGAGCCAT
GACAAAGAGATCGAGCGGATCTGCAATCTGTACTACCAGGGCTTCATCGA
TTCAATTCAGGAGCTGCTCCAGGTGCGCACGCAGGCCCAACAGCTGCACA
ACGAAGTGCATTCCTTGGACACGTCCCTTCGCCAGATCAGCGCCTCGCTG
ATTCAGCAGGGCAATGATCTAGTGCGGGCCCGTCAGATCGAATCCAATCT
GGCCAGCGCCATCGAGGCACTCAAATCCTGTCTGCCCGCATTGGAGTGCT
ACATGAAGTTCACACAGCAGGCAAAGAACAAGCAGTACTACCAGGCGCTG
AGAACTCTGGAGACTCTGGAGACGGAGCACCTAACGCGCTTGAAGACACA
CAACTACCGATTCGCCACCCAGATGCAGATACAGATTCCCATAATCAAGG
AAAACATCCGTCGCTCTTCCGCCTCGGACTTTCGAGAGTTCCTCGAGAAC
ATCCGGAAGTTTTCACCCCGCATCGGCGAGCTGGCCATCACACACACAAA
ACAGCTCCAAAAGCGTGATATCAACGCCATCATTGCCGAGCACATGCAGC
AGATGAATGGCGGCGAAGCCGGCGGAGCAGGTGCTGGCGGGGATGATGAT
GGTGCCAACGTTAGTGCCCAGGATCTCATTGACTTCTCCCCCATCTACCG
CTGCCTACACATCTACATGGTGCTGGGTCAGCGGGAGTACTTCGAGAAGG
ACTATCGTCAGCAGCGCAGGGATCAGGCCAAACTGGTGCTTCAACCGCCG
CCCAACATGCACGACAATTTGGAGGCCTACAAAACGTACATCTGTGCCAT
CGTTGGCTTCTTCGTGGTTGAGGATCACGTTAAAAACACGGCGGGCGATG
TCGTGACCAGCAGTTATTTGGAGGATCTGTGGTCCAGCTCGTTAACCAAG
TTTGTCAACGAAATCAGCATGAGTTCTTCGTCCTGCACCGATCCTAATAT
CCTTCTGCGCATTAAGAACCTCATTATGCTGTCCATCAACACCTTTAAGT
GCTACGGTTACACCGTGAACATCCTCTGGGAACTATTGCACAACATGCGG
GATCATTATAATGAGGTTTTACTGCAACGCTGGGTACATGTGTTCCGCGA
AATTCTCGACAAGGAACAGTTCCTGCCCATGGTTGTACAAAACACGGAAG
AGTATGAATGCATCATCGAACGATTCCCCTTCCACTCGGAACAGCTTGAA
AATGCTCCGTTTCCGAAGAAATTCCCCTTTTCGAGAATGGTGCCGGAGGT
TTATCACCAGGCCAAGGAATTCATGTACGCCTGCATGAAGTTCGCCGAGG
AGCTCACCCTATCGCCCAACGAGGTGGCCGCCATGGTGCGCAAGGCGGCC
AATCTGCTGCTCACACGAAGTTTCAGTGGCTGTCTATCTGTGGTGTTCCG
CCAGCCGAGCATCACGCTGACGCAGCTCATTCAGATCATAATCGACACGC
AGTACTTGGAGAAGGCAGGGCCGTTTCTGGACGAGTTCGTGTGTCACATG
ACCAACACGGAGAGGAGCGTATCTCAGACACCATCGGCCATGTTCCACGT
GGCCCGGCAAGATGCCGAGAAGCAGGTGGGCCTACGTATTTGCTCGAAGA
TCGATGAGTTCTTCGAACTAAGCGCCTATGACTGGTTACTAGTAGAGCCG
CCGGGAATAGCCTCCGCCTTCATTACGGACATGATTTCCTACCTTAAGAG
CACCTTTGACAGCTTTGCCTTCAAGCTGCCCCACATCGCCCAGGCGGCCT
GCCGACGCACCTTCGAGCACATTGCAGAGAAGATTTACTCGATCATGTAT
GACGAGGATGTGAAGCAGATTTCCACGGGAGCACTCACACAAATCAACTT
GGATCTGATGCAGTGCGAGTTTTTTGCGGCCTCGGAACCTGTGCCTGGTC
TAAAGGAAGGAGAGCTGAGCAAGTACTTCCTACGTAACCGTCAGCTGTTG
GACCTGCTCATTCTAGAGGAATGGAGCACGTATTTCCATGACTATGGCAA
GCAAGAGAACCGCTACCATCTGGTGCAACCGCAGTCCATTATTGTGATAC
TGGAAAAGATCCGCGAGGCGGACAAAAAGCCAATTTTCTCGTTGGTGCGA
AAGAATGACAAGAAGAAGCTTTTGGAGACGGTGCTCAAGCAGCTTAAGCA
CATTGCCGATAGACAGAATTAGAAATATCAGGCTTGTAGTTAGTCGCTTT
AAGTCCTTGTTGAATTCGTGTAATCATAAACTATAGCTTTTCATCTTTAT
TGTTTAGGCTAATTTGAATTTTCACATGGAAAAAGTATTTAGTTCTCATT
ACATTTGATTCGATTTGTTTTTATAAAAGACAAATTTCAATTGAAACAGC
TCGACCCGTTGAACGTGTAAAATTGTATTTTGAATTTTTGATTCTTATGT
ACAAAAAGCGCAGAACTTTAGCGGTTGCCTACGTACGGATTGTTGATAAA
TACAAAACGAAAACGACATAGAATGAAAACAAACGGAGAGGAACGTCTAA
ATAACAAATTGTATATAATTATTAGATGTATGTAGCGTACGTGTATTGTG
TAGGTATATTCCGCAAATCGTAATAAACTAACTTCTAAGTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

RE55430.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
sec15-RA 2878 sec15-RA 88..2878 1..2791 13955 100 Plus
CG5745-RA 2248 CG5745-RA 1985..2248 2792..2529 1320 100 Minus
CG5745.b 1985 CG5745.b 1735..1985 2792..2542 1255 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16928917..16930444 2791..1264 7535 99.5 Minus
chr3R 27901430 chr3R 16930505..16931626 1267..146 5475 99.2 Minus
chr3R 27901430 chr3R 16931687..16931834 148..1 650 95.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21105045..21106573 2792..1264 7645 100 Minus
3R 32079331 3R 21106634..21107755 1267..146 5610 100 Minus
3R 32079331 3R 21107817..21107964 148..1 740 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20845876..20847404 2792..1264 7645 100 Minus
3R 31820162 3R 20847465..20848586 1267..146 5610 100 Minus
3R 31820162 3R 20848648..20848795 148..1 740 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:20:24 has no hits.

RE55430.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:21:10 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16928917..16930442 1266..2791 99 <- Minus
chr3R 16930507..16931624 148..1265 99 <- Minus
chr3R 16931688..16931834 1..147 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:24:05 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
sec15-RA 1..2301 72..2372 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:54:30 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
sec15-RA 1..2301 72..2372 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:35:27 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
sec15-RA 1..2301 72..2372 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:45:35 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
sec15-RA 1..2301 72..2372 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:05 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
Sec15-RA 1..2301 72..2372 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:09:30 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
sec15-RA 1..2616 1..2616 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:54:30 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
sec15-RA 1..2616 1..2616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:27 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
sec15-RA 9..2799 1..2791 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:45:35 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
sec15-RA 1..2616 1..2616 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:05 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
Sec15-RA 9..2799 1..2791 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:10 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21105046..21106571 1266..2791 100 <- Minus
3R 21106636..21107753 148..1265 100 <- Minus
3R 21107818..21107964 1..147 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:10 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21105046..21106571 1266..2791 100 <- Minus
3R 21106636..21107753 148..1265 100 <- Minus
3R 21107818..21107964 1..147 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:21:10 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21105046..21106571 1266..2791 100 <- Minus
3R 21106636..21107753 148..1265 100 <- Minus
3R 21107818..21107964 1..147 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:27 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16933540..16933686 1..147 100   Minus
arm_3R 16930768..16932293 1266..2791 100 <- Minus
arm_3R 16932358..16933475 148..1265 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:16:35 Download gff for RE55430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20845877..20847402 1266..2791 100 <- Minus
3R 20847467..20848584 148..1265 100 <- Minus
3R 20848649..20848795 1..147 100   Minus

RE55430.pep Sequence

Translation from 71 to 2371

> RE55430.pep
MSKVTVQDIEAVDDYWGPTFRSILEGNNTKQIGDQLEQRIRSHDKEIERI
CNLYYQGFIDSIQELLQVRTQAQQLHNEVHSLDTSLRQISASLIQQGNDL
VRARQIESNLASAIEALKSCLPALECYMKFTQQAKNKQYYQALRTLETLE
TEHLTRLKTHNYRFATQMQIQIPIIKENIRRSSASDFREFLENIRKFSPR
IGELAITHTKQLQKRDINAIIAEHMQQMNGGEAGGAGAGGDDDGANVSAQ
DLIDFSPIYRCLHIYMVLGQREYFEKDYRQQRRDQAKLVLQPPPNMHDNL
EAYKTYICAIVGFFVVEDHVKNTAGDVVTSSYLEDLWSSSLTKFVNEISM
SSSSCTDPNILLRIKNLIMLSINTFKCYGYTVNILWELLHNMRDHYNEVL
LQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKK
FPFSRMVPEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRS
FSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSV
SQTPSAMFHVARQDAEKQVGLRICSKIDEFFELSAYDWLLVEPPGIASAF
ITDMISYLKSTFDSFAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQI
STGALTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLILEE
WSTYFHDYGKQENRYHLVQPQSIIVILEKIREADKKPIFSLVRKNDKKKL
LETVLKQLKHIADRQN*

RE55430.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18516-PA 758 GF18516-PA 1..758 1..766 3955 96 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14883-PA 766 GG14883-PA 1..766 1..766 4110 99.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19328-PA 758 GH19328-PA 1..758 1..766 3832 92.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Sec15-PA 766 CG7034-PA 1..766 1..766 3959 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23938-PA 760 GI23938-PA 1..760 1..766 3715 92 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22033-PA 763 GL22033-PA 1..763 1..766 3993 96.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20047-PA 763 GA20047-PA 1..763 1..766 3993 96.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15101-PA 766 GM15101-PA 1..766 1..766 4128 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20007-PA 766 GD20007-PA 1..766 1..766 4132 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23727-PA 762 GJ23727-PA 1..762 1..766 3729 92.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13077-PA 761 GK13077-PA 1..761 1..766 3799 92.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25017-PA 766 GE25017-PA 1..766 1..766 4103 99 Plus

RE55430.hyp Sequence

Translation from 71 to 2371

> RE55430.hyp
MSKVTVQDIEAVDDYWGPTFRSILEGNNTKQIGDQLEQRIRSHDKEIERI
CNLYYQGFIDSIQELLQVRTQAQQLHNEVHSLDTSLRQISASLIQQGNDL
VRARQIESNLASAIEALKSCLPALECYMKFTQQAKNKQYYQALRTLETLE
TEHLTRLKTHNYRFATQMQIQIPIIKENIRRSSASDFREFLENIRKFSPR
IGELAITHTKQLQKRDINAIIAEHMQQMNGGEAGGAGAGGDDDGANVSAQ
DLIDFSPIYRCLHIYMVLGQREYFEKDYRQQRRDQAKLVLQPPPNMHDNL
EAYKTYICAIVGFFVVEDHVKNTAGDVVTSSYLEDLWSSSLTKFVNEISM
SSSSCTDPNILLRIKNLIMLSINTFKCYGYTVNILWELLHNMRDHYNEVL
LQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKK
FPFSRMVPEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRS
FSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSV
SQTPSAMFHVARQDAEKQVGLRICSKIDEFFELSAYDWLLVEPPGIASAF
ITDMISYLKSTFDSFAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQI
STGALTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLILEE
WSTYFHDYGKQENRYHLVQPQSIIVILEKIREADKKPIFSLVRKNDKKKL
LETVLKQLKHIADRQN*

RE55430.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Sec15-PA 766 CG7034-PA 1..766 1..766 3959 100 Plus