BDGP Sequence Production Resources |
Search the DGRC for RE55430
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 554 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Sec15-RA |
Protein status: | RE55430.pep: gold |
Preliminary Size: | 2301 |
Sequenced Size: | 2835 |
Gene | Date | Evidence |
---|---|---|
CG7034 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7034 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7034 | 2003-01-22 | Blastp of sequenced clone |
sec15 | 2008-04-29 | Release 5.5 accounting |
sec15 | 2008-08-15 | Release 5.9 accounting |
sec15 | 2008-12-18 | 5.12 accounting |
2835 bp (2835 high quality bases) assembled on 2003-01-22
GenBank Submission: BT003492
> RE55430.complete AAGTCGGCGAAATAATTGCTCATTAAAGTTTGGTAAAAAGTTGTTTAGAA GAGAAAAAAGAGCGTTATAAGATGTCCAAAGTGACCGTGCAAGACATTGA GGCGGTGGACGACTACTGGGGACCAACATTCCGTTCGATCCTTGAAGGCA ACAACACTAAGCAGATTGGCGACCAACTGGAGCAGCGGATACGGAGCCAT GACAAAGAGATCGAGCGGATCTGCAATCTGTACTACCAGGGCTTCATCGA TTCAATTCAGGAGCTGCTCCAGGTGCGCACGCAGGCCCAACAGCTGCACA ACGAAGTGCATTCCTTGGACACGTCCCTTCGCCAGATCAGCGCCTCGCTG ATTCAGCAGGGCAATGATCTAGTGCGGGCCCGTCAGATCGAATCCAATCT GGCCAGCGCCATCGAGGCACTCAAATCCTGTCTGCCCGCATTGGAGTGCT ACATGAAGTTCACACAGCAGGCAAAGAACAAGCAGTACTACCAGGCGCTG AGAACTCTGGAGACTCTGGAGACGGAGCACCTAACGCGCTTGAAGACACA CAACTACCGATTCGCCACCCAGATGCAGATACAGATTCCCATAATCAAGG AAAACATCCGTCGCTCTTCCGCCTCGGACTTTCGAGAGTTCCTCGAGAAC ATCCGGAAGTTTTCACCCCGCATCGGCGAGCTGGCCATCACACACACAAA ACAGCTCCAAAAGCGTGATATCAACGCCATCATTGCCGAGCACATGCAGC AGATGAATGGCGGCGAAGCCGGCGGAGCAGGTGCTGGCGGGGATGATGAT GGTGCCAACGTTAGTGCCCAGGATCTCATTGACTTCTCCCCCATCTACCG CTGCCTACACATCTACATGGTGCTGGGTCAGCGGGAGTACTTCGAGAAGG ACTATCGTCAGCAGCGCAGGGATCAGGCCAAACTGGTGCTTCAACCGCCG CCCAACATGCACGACAATTTGGAGGCCTACAAAACGTACATCTGTGCCAT CGTTGGCTTCTTCGTGGTTGAGGATCACGTTAAAAACACGGCGGGCGATG TCGTGACCAGCAGTTATTTGGAGGATCTGTGGTCCAGCTCGTTAACCAAG TTTGTCAACGAAATCAGCATGAGTTCTTCGTCCTGCACCGATCCTAATAT CCTTCTGCGCATTAAGAACCTCATTATGCTGTCCATCAACACCTTTAAGT GCTACGGTTACACCGTGAACATCCTCTGGGAACTATTGCACAACATGCGG GATCATTATAATGAGGTTTTACTGCAACGCTGGGTACATGTGTTCCGCGA AATTCTCGACAAGGAACAGTTCCTGCCCATGGTTGTACAAAACACGGAAG AGTATGAATGCATCATCGAACGATTCCCCTTCCACTCGGAACAGCTTGAA AATGCTCCGTTTCCGAAGAAATTCCCCTTTTCGAGAATGGTGCCGGAGGT TTATCACCAGGCCAAGGAATTCATGTACGCCTGCATGAAGTTCGCCGAGG AGCTCACCCTATCGCCCAACGAGGTGGCCGCCATGGTGCGCAAGGCGGCC AATCTGCTGCTCACACGAAGTTTCAGTGGCTGTCTATCTGTGGTGTTCCG CCAGCCGAGCATCACGCTGACGCAGCTCATTCAGATCATAATCGACACGC AGTACTTGGAGAAGGCAGGGCCGTTTCTGGACGAGTTCGTGTGTCACATG ACCAACACGGAGAGGAGCGTATCTCAGACACCATCGGCCATGTTCCACGT GGCCCGGCAAGATGCCGAGAAGCAGGTGGGCCTACGTATTTGCTCGAAGA TCGATGAGTTCTTCGAACTAAGCGCCTATGACTGGTTACTAGTAGAGCCG CCGGGAATAGCCTCCGCCTTCATTACGGACATGATTTCCTACCTTAAGAG CACCTTTGACAGCTTTGCCTTCAAGCTGCCCCACATCGCCCAGGCGGCCT GCCGACGCACCTTCGAGCACATTGCAGAGAAGATTTACTCGATCATGTAT GACGAGGATGTGAAGCAGATTTCCACGGGAGCACTCACACAAATCAACTT GGATCTGATGCAGTGCGAGTTTTTTGCGGCCTCGGAACCTGTGCCTGGTC TAAAGGAAGGAGAGCTGAGCAAGTACTTCCTACGTAACCGTCAGCTGTTG GACCTGCTCATTCTAGAGGAATGGAGCACGTATTTCCATGACTATGGCAA GCAAGAGAACCGCTACCATCTGGTGCAACCGCAGTCCATTATTGTGATAC TGGAAAAGATCCGCGAGGCGGACAAAAAGCCAATTTTCTCGTTGGTGCGA AAGAATGACAAGAAGAAGCTTTTGGAGACGGTGCTCAAGCAGCTTAAGCA CATTGCCGATAGACAGAATTAGAAATATCAGGCTTGTAGTTAGTCGCTTT AAGTCCTTGTTGAATTCGTGTAATCATAAACTATAGCTTTTCATCTTTAT TGTTTAGGCTAATTTGAATTTTCACATGGAAAAAGTATTTAGTTCTCATT ACATTTGATTCGATTTGTTTTTATAAAAGACAAATTTCAATTGAAACAGC TCGACCCGTTGAACGTGTAAAATTGTATTTTGAATTTTTGATTCTTATGT ACAAAAAGCGCAGAACTTTAGCGGTTGCCTACGTACGGATTGTTGATAAA TACAAAACGAAAACGACATAGAATGAAAACAAACGGAGAGGAACGTCTAA ATAACAAATTGTATATAATTATTAGATGTATGTAGCGTACGTGTATTGTG TAGGTATATTCCGCAAATCGTAATAAACTAACTTCTAAGTTAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16928917..16930444 | 2791..1264 | 7535 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 16930505..16931626 | 1267..146 | 5475 | 99.2 | Minus |
chr3R | 27901430 | chr3R | 16931687..16931834 | 148..1 | 650 | 95.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 21105045..21106573 | 2792..1264 | 7645 | 100 | Minus |
3R | 32079331 | 3R | 21106634..21107755 | 1267..146 | 5610 | 100 | Minus |
3R | 32079331 | 3R | 21107817..21107964 | 148..1 | 740 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20845876..20847404 | 2792..1264 | 7645 | 100 | Minus |
3R | 31820162 | 3R | 20847465..20848586 | 1267..146 | 5610 | 100 | Minus |
3R | 31820162 | 3R | 20848648..20848795 | 148..1 | 740 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16928917..16930442 | 1266..2791 | 99 | <- | Minus |
chr3R | 16930507..16931624 | 148..1265 | 99 | <- | Minus |
chr3R | 16931688..16931834 | 1..147 | 95 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec15-RA | 1..2301 | 72..2372 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec15-RA | 1..2301 | 72..2372 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec15-RA | 1..2301 | 72..2372 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec15-RA | 1..2301 | 72..2372 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec15-RA | 1..2301 | 72..2372 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec15-RA | 1..2616 | 1..2616 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec15-RA | 1..2616 | 1..2616 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec15-RA | 9..2799 | 1..2791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sec15-RA | 1..2616 | 1..2616 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sec15-RA | 9..2799 | 1..2791 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21105046..21106571 | 1266..2791 | 100 | <- | Minus |
3R | 21106636..21107753 | 148..1265 | 100 | <- | Minus |
3R | 21107818..21107964 | 1..147 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21105046..21106571 | 1266..2791 | 100 | <- | Minus |
3R | 21106636..21107753 | 148..1265 | 100 | <- | Minus |
3R | 21107818..21107964 | 1..147 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21105046..21106571 | 1266..2791 | 100 | <- | Minus |
3R | 21106636..21107753 | 148..1265 | 100 | <- | Minus |
3R | 21107818..21107964 | 1..147 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16933540..16933686 | 1..147 | 100 | Minus | |
arm_3R | 16930768..16932293 | 1266..2791 | 100 | <- | Minus |
arm_3R | 16932358..16933475 | 148..1265 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20845877..20847402 | 1266..2791 | 100 | <- | Minus |
3R | 20847467..20848584 | 148..1265 | 100 | <- | Minus |
3R | 20848649..20848795 | 1..147 | 100 | Minus |
Translation from 71 to 2371
> RE55430.pep MSKVTVQDIEAVDDYWGPTFRSILEGNNTKQIGDQLEQRIRSHDKEIERI CNLYYQGFIDSIQELLQVRTQAQQLHNEVHSLDTSLRQISASLIQQGNDL VRARQIESNLASAIEALKSCLPALECYMKFTQQAKNKQYYQALRTLETLE TEHLTRLKTHNYRFATQMQIQIPIIKENIRRSSASDFREFLENIRKFSPR IGELAITHTKQLQKRDINAIIAEHMQQMNGGEAGGAGAGGDDDGANVSAQ DLIDFSPIYRCLHIYMVLGQREYFEKDYRQQRRDQAKLVLQPPPNMHDNL EAYKTYICAIVGFFVVEDHVKNTAGDVVTSSYLEDLWSSSLTKFVNEISM SSSSCTDPNILLRIKNLIMLSINTFKCYGYTVNILWELLHNMRDHYNEVL LQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKK FPFSRMVPEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRS FSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSV SQTPSAMFHVARQDAEKQVGLRICSKIDEFFELSAYDWLLVEPPGIASAF ITDMISYLKSTFDSFAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQI STGALTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLILEE WSTYFHDYGKQENRYHLVQPQSIIVILEKIREADKKPIFSLVRKNDKKKL LETVLKQLKHIADRQN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18516-PA | 758 | GF18516-PA | 1..758 | 1..766 | 3955 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14883-PA | 766 | GG14883-PA | 1..766 | 1..766 | 4110 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19328-PA | 758 | GH19328-PA | 1..758 | 1..766 | 3832 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sec15-PA | 766 | CG7034-PA | 1..766 | 1..766 | 3959 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23938-PA | 760 | GI23938-PA | 1..760 | 1..766 | 3715 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22033-PA | 763 | GL22033-PA | 1..763 | 1..766 | 3993 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20047-PA | 763 | GA20047-PA | 1..763 | 1..766 | 3993 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15101-PA | 766 | GM15101-PA | 1..766 | 1..766 | 4128 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20007-PA | 766 | GD20007-PA | 1..766 | 1..766 | 4132 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23727-PA | 762 | GJ23727-PA | 1..762 | 1..766 | 3729 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13077-PA | 761 | GK13077-PA | 1..761 | 1..766 | 3799 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25017-PA | 766 | GE25017-PA | 1..766 | 1..766 | 4103 | 99 | Plus |
Translation from 71 to 2371
> RE55430.hyp MSKVTVQDIEAVDDYWGPTFRSILEGNNTKQIGDQLEQRIRSHDKEIERI CNLYYQGFIDSIQELLQVRTQAQQLHNEVHSLDTSLRQISASLIQQGNDL VRARQIESNLASAIEALKSCLPALECYMKFTQQAKNKQYYQALRTLETLE TEHLTRLKTHNYRFATQMQIQIPIIKENIRRSSASDFREFLENIRKFSPR IGELAITHTKQLQKRDINAIIAEHMQQMNGGEAGGAGAGGDDDGANVSAQ DLIDFSPIYRCLHIYMVLGQREYFEKDYRQQRRDQAKLVLQPPPNMHDNL EAYKTYICAIVGFFVVEDHVKNTAGDVVTSSYLEDLWSSSLTKFVNEISM SSSSCTDPNILLRIKNLIMLSINTFKCYGYTVNILWELLHNMRDHYNEVL LQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKK FPFSRMVPEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRS FSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSV SQTPSAMFHVARQDAEKQVGLRICSKIDEFFELSAYDWLLVEPPGIASAF ITDMISYLKSTFDSFAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQI STGALTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLILEE WSTYFHDYGKQENRYHLVQPQSIIVILEKIREADKKPIFSLVRKNDKKKL LETVLKQLKHIADRQN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sec15-PA | 766 | CG7034-PA | 1..766 | 1..766 | 3959 | 100 | Plus |