![]() | BDGP Sequence Production Resources |
Search the DGRC for RE55455
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 554 |
Well: | 55 |
Vector: | pFlc-1 |
Associated Gene/Transcript | pall-RA |
Protein status: | RE55455.pep: gold |
Sequenced Size: | 1198 |
Gene | Date | Evidence |
---|---|---|
CG3428 | 2003-01-01 | Sim4 clustering to Release 3 |
pall | 2008-04-29 | Release 5.5 accounting |
pall | 2008-08-15 | Release 5.9 accounting |
pall | 2008-12-18 | 5.12 accounting |
1198 bp (1198 high quality bases) assembled on 2004-12-16
GenBank Submission: BT021260
> RE55455.complete AATAGCAATATTCTCGACTATAATCGCTCCGCTCGAAACTAGTAATAAGT ATAAACGAGAAATATGAATCTGTTAGACTTGCCACAAACACTAATTCAGG ACATTTTGGAGTTGCTCCCCTACGACGAGGTGGCAAAAAAACGAGAGGTG TGCACTCTATTTAATTATCTTGGGCAGCAAATATTAAACAAGGGTTTTAA CAAGATCATTATGGCCCATGCCAAGAACTTCAAGCGCATCAAATCCATGC TGCCACGACGGGAATCGGAACGCAGGAACCACATTCTATCCCGCCACTCG GACATACTTACCTCGATCGAAACACGGATCTCGATGCTGACCATGACGTA CTCCAAGTTTATTGACCTCAACATCTGCTGTTTCATACCTGGTCGCGTTC TGGACGAGATCAACAGCATCCTGCGCATTTTGAGCACCTCCACTAAACAG CTGCGACCACATGAAGTGCTGCAGGAGCTGCGCGACATCTCCTCCATGGC CATTGAGCATTTCGACGAAAAGATTGCTGTGAATTTCAAATTGGAACACC GAAAACAATTGGCGGAATCCACGGCGGCCGGAGCTCGACTTGTGGTTTGC AGTGCCTTGGGCGACATAAGCTTTAGTGGCGTAAGGCGAACCGGAATCAG TCGTCCCGTAGATCATGGGCTCGTCCAGCAGGCTATCGTTCAGTTGGCCC CCATATCTGCCAGCAAATCACACTCTGATTCCTCTCAAAAGGATCGCATG TCTAAACAACTGTTCAAGCAATACCAGCTCCAAAGGTCACTTTCGCAAAA GATTCGCCTCTTGGAAGTGTCGCGCAAGGTGCAGGATCGCCGATTGCAGG AAGCCCTATCCAGCATCACCGAACTGACCACCCAAGTGTCCGAACTTAAG CGCCAAATGGAGGATGTGGTGGCCAATATGCCCAGTTGCGCTGTTAAACG TCAGGCTGTCGCCAGCGCGGACTGCTTACCACCGGCCCTGAAAAAACCCA AGGTGTAGCCAAGGATTAGCAATACTAAATAGCTTTTAAATAAAACTTCC CTCCAGATGGTGTAGCTGGAGTACGTAGCATTAATTAGGCAGTGCATCTT CGATATATCGCGTTAAGATTTATTGTTGCACTTGTTACTTAAATATTGTA TTACTACTATATAAATACATTGAACATCTAGTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9478331..9479240 | 1182..273 | 4550 | 100 | Minus |
chr3L | 24539361 | chr3L | 9479500..9479649 | 150..1 | 750 | 100 | Minus |
chr3L | 24539361 | chr3L | 9479306..9479436 | 276..146 | 655 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9479544..9480458 | 1187..273 | 4560 | 99.8 | Minus |
3L | 28103327 | 3L | 9480718..9480867 | 150..1 | 750 | 100 | Minus |
3L | 28103327 | 3L | 9480524..9480654 | 276..146 | 655 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 2968..3071 | 927..1033 | 113 | 60.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9478331..9479237 | 276..1182 | 100 | <- | Minus |
chr3L | 9479307..9479434 | 148..275 | 100 | <- | Minus |
chr3L | 9479503..9479649 | 1..147 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pall-RA | 1..945 | 64..1008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pall-RA | 1..945 | 64..1008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pall-RA | 1..945 | 64..1008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pall-RA | 1..945 | 64..1008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pall-RA | 1..945 | 64..1008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pall-RA | 1..1182 | 1..1182 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pall-RA | 1..1182 | 1..1182 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pall-RA | 24..1205 | 1..1182 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pall-RA | 1..1182 | 1..1182 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pall-RA | 24..1205 | 1..1182 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9487621..9487767 | 1..147 | 100 | Minus | |
3L | 9486449..9487355 | 276..1182 | 100 | <- | Minus |
3L | 9487425..9487552 | 148..275 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9487621..9487767 | 1..147 | 100 | Minus | |
3L | 9486449..9487355 | 276..1182 | 100 | <- | Minus |
3L | 9487425..9487552 | 148..275 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9487621..9487767 | 1..147 | 100 | Minus | |
3L | 9486449..9487355 | 276..1182 | 100 | <- | Minus |
3L | 9487425..9487552 | 148..275 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9479549..9480455 | 276..1182 | 100 | <- | Minus |
arm_3L | 9480525..9480652 | 148..275 | 100 | <- | Minus |
arm_3L | 9480721..9480867 | 1..147 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9480721..9480867 | 1..147 | 100 | Minus | |
3L | 9480525..9480652 | 148..275 | 100 | <- | Minus |
3L | 9479549..9480455 | 276..1182 | 100 | <- | Minus |
Translation from 63 to 1007
> RE55455.pep MNLLDLPQTLIQDILELLPYDEVAKKREVCTLFNYLGQQILNKGFNKIIM AHAKNFKRIKSMLPRRESERRNHILSRHSDILTSIETRISMLTMTYSKFI DLNICCFIPGRVLDEINSILRILSTSTKQLRPHEVLQELRDISSMAIEHF DEKIAVNFKLEHRKQLAESTAAGARLVVCSALGDISFSGVRRTGISRPVD HGLVQQAIVQLAPISASKSHSDSSQKDRMSKQLFKQYQLQRSLSQKIRLL EVSRKVQDRRLQEALSSITELTTQVSELKRQMEDVVANMPSCAVKRQAVA SADCLPPALKKPKV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24660-PA | 316 | GF24660-PA | 1..316 | 1..314 | 1371 | 81 | Plus |
Dana\GF13725-PA | 605 | GF13725-PA | 124..276 | 2..154 | 327 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14032-PA | 314 | GG14032-PA | 1..314 | 1..314 | 1577 | 95.5 | Plus |
Dere\GG24142-PA | 604 | GG24142-PA | 123..274 | 3..154 | 306 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16208-PA | 313 | GH16208-PA | 1..311 | 1..313 | 941 | 59.5 | Plus |
Dgri\GH22835-PA | 595 | GH22835-PA | 71..224 | 1..154 | 302 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pall-PA | 314 | CG3428-PA | 1..314 | 1..314 | 1556 | 100 | Plus |
dmpd-PB | 603 | CG11866-PB | 121..382 | 2..284 | 305 | 30.2 | Plus |
dmpd-PA | 603 | CG11866-PA | 121..382 | 2..284 | 305 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13354-PA | 351 | GI13354-PA | 1..351 | 1..314 | 965 | 56.3 | Plus |
Dmoj\GI21213-PA | 559 | GI21213-PA | 66..219 | 1..154 | 308 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20033-PA | 579 | GL20033-PA | 95..247 | 2..154 | 325 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11246-PA | 579 | GA11246-PA | 95..247 | 2..154 | 326 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24866-PA | 307 | GM24866-PA | 1..307 | 1..314 | 1587 | 97.1 | Plus |
Dsec\GM21188-PA | 601 | GM21188-PA | 118..271 | 1..154 | 311 | 40.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12918-PA | 475 | GD12918-PA | 190..475 | 29..314 | 1470 | 97.9 | Plus |
Dsim\GD12918-PA | 475 | GD12918-PA | 1..190 | 1..190 | 1010 | 98.9 | Plus |
Dsim\GD10716-PA | 601 | GD10716-PA | 118..271 | 1..154 | 312 | 40.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13184-PA | 342 | GJ13184-PA | 1..342 | 1..314 | 1030 | 61.3 | Plus |
Dvir\GJ20816-PA | 577 | GJ20816-PA | 56..209 | 1..154 | 297 | 39.6 | Plus |
Translation from 63 to 1007
> RE55455.hyp MNLLDLPQTLIQDILELLPYDEVAKKREVCTLFNYLGQQILNKGFNKIIM AHAKNFKRIKSMLPRRESERRNHILSRHSDILTSIETRISMLTMTYSKFI DLNICCFIPGRVLDEINSILRILSTSTKQLRPHEVLQELRDISSMAIEHF DEKIAVNFKLEHRKQLAESTAAGARLVVCSALGDISFSGVRRTGISRPVD HGLVQQAIVQLAPISASKSHSDSSQKDRMSKQLFKQYQLQRSLSQKIRLL EVSRKVQDRRLQEALSSITELTTQVSELKRQMEDVVANMPSCAVKRQAVA SADCLPPALKKPKV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pall-PA | 314 | CG3428-PA | 1..314 | 1..314 | 1556 | 100 | Plus |
dmpd-PB | 603 | CG11866-PB | 121..382 | 2..284 | 305 | 30.2 | Plus |
dmpd-PA | 603 | CG11866-PA | 121..382 | 2..284 | 305 | 30.2 | Plus |