BDGP Sequence Production Resources |
Search the DGRC for RE55494
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 554 |
Well: | 94 |
Vector: | pFlc-1 |
Associated Gene/Transcript | cav-RE |
Protein status: | RE55494.pep: gold |
Sequenced Size: | 1289 |
Gene | Date | Evidence |
---|---|---|
cav-RE | 2010-11-11 | Gleaning Pick By Joe Carlson |
1289 bp assembled on 2010-12-09
GenBank Submission: BT125833.1
> RE55494.complete AGTGTTCTGATAAAGTGTGAGACAACGTTTGTTTGTAAAAAGAACTACTC AAATGGGATTTCAGTCAAAACAAAACAAGAGCACATCACACACAAGACGC ACACATACACACAAGACGCACACGCACACAGATGGTCAAAGAGGTTAATA TGTCGGGGACGCAAATGTCTGCCTTCCTGAGAAAGTATCTAGCCGACGAG GACAAAAAAATTCGTGCGCAATTCAAAGAAAGCGATCCTAACAACAAATT GATTCTATGGATGCACGAAAAAACGAGAATAACCGAGGAGGACTTGGCAC GCCCATACACCGAGGACGAGGTAAAGGAGCTTTGTCTACGCACCAAAGTG AAGGTTGATATGACCGCTTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTT TGAAGCAAAAGGACGTTTTGTGAACAAGTCTGAGAGATTCATCAACCGAA TGTATATGAAAGCGGTGCGCAGAAAGATGGTCCAACCGTATCCGGAGGAG TTTGTGGCCCAGCGAAGAGAAATAGTTGCAGCCGAGACTAAGAAGCAGAA CATCAGCCGATTGGATAGATGGCAAAAGAAAAAGAGTCAAAACCTATCAG CACCAGAATCCTCTCCAGACGCTCATGCATCTTCTAATGACGCGGTGCAG AGCCACGAGGACCAAGCAAACACAAATCTTAGTTCACTGTCTCAAATGAA CTTTCAAGTGGAAGCGATGGCTCCGCCAGGCGTGTCGTCATCTGATCTTA GCGGCATCGGAGACGATGAGGACGAACAGCAGCAGTCAGGATTTCAGGAT GAGAACATCAACCGTCCAGAGACAGAGATTAATGAGAATTCGGTGAGATG TGATCCAATTAATTTAGGAAGGATGCGGACTGGATGTATAAATTCGCAAG CAAATAACAGTTTCCGGAATACGGAGTCTGATCCGGACTACTATATGTTT GGCACCCAATTGAGCACATTAGTACGACCCACGTCGACTCAAGAGCCTGA CGATCAGGTAAACTGTCCAGAGACAGAGATGAATGAGAGCTGGGTAAGGT GTGATCAAATTAATTCGGAAAGCTTGTCGATTGGACCGTCAATTGATTCG GAAGGAACTATCACTTTTCAAAATACAGAATCTGAGCCGATCGACGTCAC CTCAATAGCCTGATGTCCATATATTAAACTATATAAAGTTCTTCATTTAT TGGTGTTAATTAATTAAAAACATGTAATCCCTAAAAATGTTATAAAATGT ATAATAAAAATCTTAATTAAAATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20045879..20046877 | 275..1273 | 4995 | 100 | Plus |
chr3R | 27901430 | chr3R | 20044955..20045099 | 1..145 | 725 | 100 | Plus |
chr3R | 27901430 | chr3R | 20045681..20045818 | 138..275 | 675 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24222535..24223534 | 275..1274 | 5000 | 100 | Plus |
3R | 32079331 | 3R | 24221611..24221755 | 1..145 | 725 | 100 | Plus |
3R | 32079331 | 3R | 24222337..24222474 | 138..275 | 675 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23963366..23964365 | 275..1274 | 5000 | 100 | Plus |
3R | 31820162 | 3R | 23962442..23962586 | 1..145 | 725 | 100 | Plus |
3R | 31820162 | 3R | 23963168..23963305 | 138..275 | 675 | 99.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20044955..20045035 | 1..81 | 100 | == | Plus |
chr3R | 20045685..20045818 | 142..275 | 100 | -> | Plus |
chr3R | 20045880..20046833 | 276..1229 | 100 | <- | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RE | 1..1032 | 132..1163 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RE | 1..1032 | 132..1163 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RE | 1..1032 | 132..1163 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RE | 470..1737 | 1..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RE | 509..1776 | 1..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cav-RE | 509..1776 | 1..1268 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24221611..24221753 | 1..143 | 100 | -> | Plus |
3R | 24222343..24222474 | 144..275 | 100 | -> | Plus |
3R | 24222536..24223533 | 276..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24221611..24221753 | 1..143 | 100 | -> | Plus |
3R | 24222343..24222474 | 144..275 | 100 | -> | Plus |
3R | 24222536..24223533 | 276..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24221611..24221753 | 1..143 | 100 | -> | Plus |
3R | 24222343..24222474 | 144..275 | 100 | -> | Plus |
3R | 24222536..24223533 | 276..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20047333..20047475 | 1..143 | 100 | -> | Plus |
arm_3R | 20048065..20048196 | 144..275 | 100 | -> | Plus |
arm_3R | 20048258..20049255 | 276..1273 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23963367..23964364 | 276..1273 | 100 | Plus | |
3R | 23962442..23962584 | 1..143 | 100 | -> | Plus |
3R | 23963174..23963305 | 144..275 | 100 | -> | Plus |
Translation from 131 to 1162
> RE55494.pep MVKEVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKTRI TEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVNKS ERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQKK KSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAPPG VSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRMRT GCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPETEM NESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16116-PA | 313 | GF16116-PA | 29..311 | 42..289 | 347 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11268-PA | 328 | GG11268-PA | 1..328 | 7..343 | 1227 | 73.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18668-PA | 216 | GH18668-PA | 1..78 | 77..154 | 208 | 48.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cav-PE | 343 | CG6219-PE | 1..343 | 1..343 | 1786 | 100 | Plus |
cav-PA | 345 | CG6219-PA | 7..345 | 5..343 | 1767 | 100 | Plus |
cav-PB | 337 | CG6219-PB | 1..337 | 7..343 | 1757 | 100 | Plus |
cav-PD | 337 | CG6219-PD | 1..337 | 7..343 | 1757 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24179-PA | 301 | GI24179-PA | 5..147 | 12..153 | 324 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23417-PA | 282 | GL23417-PA | 1..279 | 7..288 | 359 | 35.4 | Plus |
Dper\GL14051-PA | 186 | GL14051-PA | 1..159 | 7..166 | 264 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27250-PA | 283 | GA27250-PA | 1..280 | 7..288 | 361 | 36.3 | Plus |
Dpse\GA26940-PA | 186 | GA26940-PA | 1..159 | 7..166 | 275 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26573-PA | 336 | GM26573-PA | 1..336 | 7..343 | 1607 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\cav-PA | 336 | GD21077-PA | 1..336 | 7..343 | 1600 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14215-PA | 301 | GJ14215-PA | 1..295 | 7..289 | 364 | 34.7 | Plus |
Dvir\GJ17001-PA | 390 | GJ17001-PA | 9..203 | 12..207 | 213 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24325-PA | 255 | GK24325-PA | 9..248 | 15..288 | 331 | 35.7 | Plus |
Dwil\GK11387-PA | 271 | GK11387-PA | 19..213 | 28..233 | 330 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\anon-EST:fe1G5-PA | 319 | GE23460-PA | 1..316 | 7..339 | 1164 | 67.4 | Plus |
Translation from 131 to 1162
> RE55494.hyp MVKEVNMSGTQMSAFLRKYLADEDKKIRAQFKESDPNNKLILWMHEKTRI TEEDLARPYTEDEVKELCLRTKVKVDMTAWNCLWEAKKRFEAKGRFVNKS ERFINRMYMKAVRRKMVQPYPEEFVAQRREIVAAETKKQNISRLDRWQKK KSQNLSAPESSPDAHASSNDAVQSHEDQANTNLSSLSQMNFQVEAMAPPG VSSSDLSGIGDDEDEQQQSGFQDENINRPETEINENSVRCDPINLGRMRT GCINSQANNSFRNTESDPDYYMFGTQLSTLVRPTSTQEPDDQVNCPETEM NESWVRCDQINSESLSIGPSIDSEGTITFQNTESEPIDVTSIA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cav-PE | 343 | CG6219-PE | 1..343 | 1..343 | 1786 | 100 | Plus |
cav-PA | 345 | CG6219-PA | 7..345 | 5..343 | 1767 | 100 | Plus |
cav-PB | 337 | CG6219-PB | 1..337 | 7..343 | 1757 | 100 | Plus |
cav-PD | 337 | CG6219-PD | 1..337 | 7..343 | 1757 | 100 | Plus |