BDGP Sequence Production Resources |
Search the DGRC for RE55542
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 555 |
Well: | 42 |
Vector: | pFlc-1 |
Associated Gene/Transcript | yellow-e-RA |
Protein status: | RE55542.pep: gold |
Preliminary Size: | 1695 |
Sequenced Size: | 1857 |
Gene | Date | Evidence |
---|---|---|
CG9792 | 2001-12-14 | Blastp of sequenced clone |
CG9792 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9792 | 2003-01-01 | Sim4 clustering to Release 3 |
yellow-e | 2008-04-29 | Release 5.5 accounting |
yellow-e | 2008-08-15 | Release 5.9 accounting |
yellow-e | 2008-12-18 | 5.12 accounting |
1857 bp (1857 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071489
> RE55542.complete ACGCAGTCGCAAAACGGCAACCGCTACGCTCGGACGTGTCGCGCGATCAG TAAAAAGAAAAAGAGCAGTAATTTAGGATTAAGTAAAATATAAAGCAGCC ACTACTACTCAACAACCAGCTCCAGCAAGCTCAAAGTGTATCAAAAACCT CCTCTTGCCATGATTCGCATCCTAGTTGGAGTGATTTGTGCGGTCCTTTG GTCGCCGGTTAGCCAGGCTCTAACCCCTGGCTTGCAGGTGGCCAAGCAGT GGAAACTCCTGCGCTATAACTTCGAACCTCAGGCTCCGGTCTCCGATCCT AATTTCTATAATCCTCAAAATGTTCTCATCACCGGCCTGGCTGTTACGGA TGATCGGATATTTGTGGCCACACCAAAGCTCTTCTCAGGAGTGCCCTCGA CTGTGAGCTGGGTTTCCAAGGCCCAGTTTGGGGATTCCCCCACCCTGAAC GCCTTTCCCGATTGGACATTCTCCAACACAGGACGCAGTGACTTCAACTG CAGCGATCTCATCCTGACTTCGGTTTACCGCCTGCGTGTGGATTCCTGCA ATCGCATTTGGCTGCTGGATGCTGGAATATCGAGATCCCTGGAGGATTAC GAAATCACTTGCCCGCCAAAGATCTTGGTCGTGGATCTGGCGACGGATCG AGTGGTGAGACGTATTGATTTTCCTCCGGAGGTCCTGCGAGGAGAGTCCC TGTTCACCAACATGGTGATTGATGAGACGACGGCCAAGGGATGCGATGAT GTGTTCGTCTATATTACCGACACCGTGGAGCCGGGAATTATTGTGTACGA CAGTGGAAAGGACGTCACCTGGCGGGTATCCCATCCAGCCATGTATCCTG ATCCGGACTTCGCACAGTCCGAGATTCATGAGCACCGCTTTGTTCTGATG GATGGAGTGGTCGGTTTGACTTTCGATGAGCGCACCGGTGTGGTTTACTT CCAGCCATTGGCCACGGATAGAGTTTTCTCCGTGCATAAGAATGTCCTGC GTGCGGGTCCTTTGCCAGATGGCAAAATGCTGGATGTGAAGCTGGTGGGC AAGAAGAGCTCCCAGGGCATTGGCCTCGCCGTATCCCCGTTCGACAGCAG CCTGATCTTCAGTCCCCTGAGTGAAACAGCCATCGCCTCGTGGAATCCAA CGACAAACCAGCAATCGGTATTGGCCTTCGATCGCGATCAGTTGCAGTTT GTGGCCGATATCACCACCACAAAATCGGAGCCGGGTGTAATCTATGCCAT AGCCTCGAAGTTCCATCGCTTCTTCCTCAAGAACCTGAATCCCAATGAGT TTAACAATCGCATTGTTAGGCTAGAACTGCCCGCTGGGAACTCGCTGCTG GGTCATCGAGTCGCCCTACCCGCACCACCCACTCACAATAGTTTGTTGAA CTACGGCGTTTTCAATACTCACGGTCAGGCCTCGACGAATGCCCTGCAAA CGTACTTCACCAGTCCGGCGCTGACCACGCCCTTTACGACCAAATCGCCC TTTAAGTTCGAGACCGGCGGCATTGTCAACTATTCTGCTCGCAATCCGTT TACCGCTTTGAATCAGGGAGAGGCCTTCCCGCCCAGCAAGGCGACCAGGG ACAACTTCCAGCGGTCCTATTTGGACACCCTGGTGGGCACCACCTCTCCG GCGGCCACCACCCGAGTGGTTTCGGTGCCACCCACCGCCTTCAGCGGCCG CCACAGTGGTTACTACTATCAGCGGACCACGAGGTCGGTGGATCAGCAGT GAAAGACAACTCGCGTACACTCTGCGTATACGCAATGCTCGCATCAGCTG ATGTAAATATAAAATGTAAATTGAATAAATTATTTTTATGACAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 9234775..9235647 | 1842..970 | 4365 | 100 | Minus |
chr3R | 27901430 | chr3R | 9236023..9236847 | 971..147 | 4110 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 9240372..9240517 | 146..1 | 730 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 13409542..13410415 | 1843..970 | 4370 | 100 | Minus |
3R | 32079331 | 3R | 13410791..13411615 | 971..147 | 4125 | 100 | Minus |
3R | 32079331 | 3R | 13415139..13415284 | 146..1 | 730 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 13150373..13151246 | 1843..970 | 4370 | 100 | Minus |
3R | 31820162 | 3R | 13151622..13152446 | 971..147 | 4125 | 100 | Minus |
3R | 31820162 | 3R | 13155970..13156115 | 146..1 | 730 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9240372..9240517 | 1..146 | 100 | Minus | |
chr3R | 9234814..9235645 | 972..1803 | 100 | <- | Minus |
chr3R | 9236023..9236847 | 147..971 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-e-RA | 1..1593 | 160..1752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-e-RA | 1..1593 | 160..1752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-e-RA | 1..1593 | 160..1752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-e-RA | 1..1593 | 160..1752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-e-RA | 1..1593 | 160..1752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-e-RA | 1..1842 | 1..1842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-e-RA | 1..1842 | 1..1842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-e-RA | 1..1842 | 1..1842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-e-RA | 1..1842 | 1..1842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
yellow-e-RA | 3..1844 | 1..1842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13409543..13410413 | 972..1842 | 100 | <- | Minus |
3R | 13410791..13411615 | 147..971 | 100 | <- | Minus |
3R | 13415139..13415284 | 1..146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13409543..13410413 | 972..1842 | 100 | <- | Minus |
3R | 13410791..13411615 | 147..971 | 100 | <- | Minus |
3R | 13415139..13415284 | 1..146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13409543..13410413 | 972..1842 | 100 | <- | Minus |
3R | 13410791..13411615 | 147..971 | 100 | <- | Minus |
3R | 13415139..13415284 | 1..146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9235265..9236135 | 972..1842 | 100 | <- | Minus |
arm_3R | 9236513..9237337 | 147..971 | 100 | <- | Minus |
arm_3R | 9240861..9241006 | 1..146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13150374..13151244 | 972..1842 | 100 | <- | Minus |
3R | 13151622..13152446 | 147..971 | 100 | <- | Minus |
3R | 13155970..13156115 | 1..146 | 100 | Minus |
Translation from 159 to 1751
> RE55542.pep MIRILVGVICAVLWSPVSQALTPGLQVAKQWKLLRYNFEPQAPVSDPNFY NPQNVLITGLAVTDDRIFVATPKLFSGVPSTVSWVSKAQFGDSPTLNAFP DWTFSNTGRSDFNCSDLILTSVYRLRVDSCNRIWLLDAGISRSLEDYEIT CPPKILVVDLATDRVVRRIDFPPEVLRGESLFTNMVIDETTAKGCDDVFV YITDTVEPGIIVYDSGKDVTWRVSHPAMYPDPDFAQSEIHEHRFVLMDGV VGLTFDERTGVVYFQPLATDRVFSVHKNVLRAGPLPDGKMLDVKLVGKKS SQGIGLAVSPFDSSLIFSPLSETAIASWNPTTNQQSVLAFDRDQLQFVAD ITTTKSEPGVIYAIASKFHRFFLKNLNPNEFNNRIVRLELPAGNSLLGHR VALPAPPTHNSLLNYGVFNTHGQASTNALQTYFTSPALTTPFTTKSPFKF ETGGIVNYSARNPFTALNQGEAFPPSKATRDNFQRSYLDTLVGTTSPAAT TRVVSVPPTAFSGRHSGYYYQRTTRSVDQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17380-PA | 524 | GF17380-PA | 1..524 | 1..524 | 2499 | 90.8 | Plus |
Dana\GF11856-PA | 428 | GF11856-PA | 1..406 | 1..390 | 418 | 29.1 | Plus |
Dana\GF11858-PA | 411 | GF11858-PA | 48..398 | 49..387 | 387 | 29.2 | Plus |
Dana\GF15359-PA | 453 | GF15359-PA | 22..388 | 25..385 | 379 | 28.1 | Plus |
Dana\GF14904-PA | 438 | GF14904-PA | 12..423 | 8..386 | 371 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17050-PA | 530 | GG17050-PA | 1..530 | 1..530 | 2649 | 95.3 | Plus |
Dere\GG16380-PA | 459 | GG16380-PA | 38..444 | 14..414 | 416 | 27.3 | Plus |
Dere\GG22849-PA | 429 | GG22849-PA | 79..406 | 66..390 | 402 | 30.4 | Plus |
Dere\GG22769-PA | 453 | GG22769-PA | 14..389 | 17..386 | 371 | 27.2 | Plus |
Dere\GG22850-PA | 412 | GG22850-PA | 1..409 | 1..400 | 369 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18542-PA | 554 | GH18542-PA | 1..552 | 1..521 | 2052 | 72.7 | Plus |
Dgri\GH21214-PA | 428 | GH21214-PA | 22..418 | 5..390 | 425 | 29.4 | Plus |
Dgri\GH21215-PA | 446 | GH21215-PA | 53..424 | 30..390 | 399 | 28.8 | Plus |
Dgri\GH21216-PA | 431 | GH21216-PA | 8..421 | 2..390 | 380 | 28.1 | Plus |
Dgri\GH23996-PA | 455 | GH23996-PA | 46..420 | 25..387 | 368 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
yellow-e-PA | 530 | CG9792-PA | 1..530 | 1..530 | 2773 | 100 | Plus |
yellow-b-PB | 453 | CG17914-PB | 1..389 | 1..386 | 381 | 27.6 | Plus |
yellow-b-PA | 453 | CG17914-PA | 1..389 | 1..386 | 381 | 27.6 | Plus |
yellow-h-PA | 463 | CG1629-PA | 53..448 | 25..414 | 378 | 27.1 | Plus |
yellow-d-PA | 432 | CG9889-PA | 83..410 | 66..390 | 375 | 28.2 | Plus |
yellow-c-PB | 438 | CG4182-PB | 20..423 | 18..386 | 368 | 27.3 | Plus |
yellow-c-PA | 438 | CG4182-PA | 20..423 | 18..386 | 368 | 27.3 | Plus |
yellow-d2-PA | 412 | CG9891-PA | 73..397 | 67..385 | 341 | 27.9 | Plus |
y-PA | 541 | CG3757-PA | 25..391 | 25..385 | 330 | 26.9 | Plus |
yellow-f2-PA | 452 | CG8063-PA | 86..437 | 41..385 | 312 | 26.8 | Plus |
yellow-f-PC | 413 | CG18550-PC | 54..400 | 47..387 | 298 | 27.1 | Plus |
yellow-f-PA | 429 | CG18550-PA | 53..416 | 44..387 | 297 | 26.7 | Plus |
yellow-f-PB | 418 | CG18550-PB | 78..405 | 66..387 | 296 | 27.7 | Plus |
yellow-e2-PB | 435 | CG17044-PB | 46..425 | 30..390 | 295 | 24.9 | Plus |
yellow-g2-PA | 382 | CG13804-PA | 65..318 | 52..329 | 240 | 29.1 | Plus |
yellow-e3-PA | 409 | CG17045-PA | 1..384 | 1..386 | 229 | 25.9 | Plus |
yellow-g-PA | 393 | CG5717-PA | 73..370 | 50..371 | 227 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23241-PA | 533 | GI23241-PA | 5..532 | 4..520 | 2105 | 75.3 | Plus |
Dmoj\GI20501-PA | 443 | GI20501-PA | 21..421 | 6..390 | 425 | 29.7 | Plus |
Dmoj\GI13248-PA | 432 | GI13248-PA | 1..417 | 1..386 | 392 | 26.8 | Plus |
Dmoj\GI20502-PA | 429 | GI20502-PA | 63..416 | 48..387 | 386 | 30.1 | Plus |
Dmoj\GI17054-PA | 454 | GI17054-PA | 23..387 | 25..385 | 360 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23985-PA | 533 | GL23985-PA | 1..527 | 1..530 | 2418 | 86.8 | Plus |
Dper\GL18156-PA | 466 | GL18156-PA | 55..457 | 25..429 | 396 | 26 | Plus |
Dper\GL17570-PA | 434 | GL17570-PA | 40..411 | 30..390 | 393 | 29.9 | Plus |
Dper\GL17571-PA | 418 | GL17571-PA | 35..414 | 36..393 | 381 | 29.8 | Plus |
Dper\GL26025-PA | 438 | GL26025-PA | 4..423 | 2..386 | 373 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22039-PA | 533 | GA22039-PA | 1..527 | 1..530 | 2420 | 87 | Plus |
Dpse\GA22103-PA | 434 | GA22103-PA | 40..411 | 30..390 | 393 | 29.9 | Plus |
Dpse\GA27858-PA | 427 | GA27858-PA | 16..407 | 25..405 | 390 | 26.4 | Plus |
Dpse\GA22105-PA | 422 | GA22105-PA | 39..418 | 36..393 | 375 | 29.5 | Plus |
Dpse\GA18010-PA | 438 | GA18010-PA | 4..423 | 2..386 | 373 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25935-PA | 530 | GM25935-PA | 1..530 | 1..530 | 2787 | 98.9 | Plus |
Dsec\GM16007-PA | 430 | GM16007-PA | 81..408 | 66..390 | 400 | 29.3 | Plus |
Dsec\GM17203-PA | 453 | GM17203-PA | 14..389 | 17..386 | 378 | 27.5 | Plus |
Dsec\GM16008-PA | 412 | GM16008-PA | 5..399 | 4..387 | 374 | 27 | Plus |
Dsec\GM15882-PA | 438 | GM15882-PA | 12..423 | 8..386 | 368 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20497-PA | 530 | GD20497-PA | 1..530 | 1..530 | 2802 | 99.2 | Plus |
Dsim\GD11758-PA | 432 | GD11758-PA | 83..410 | 66..390 | 400 | 29.3 | Plus |
Dsim\GD24079-PA | 453 | GD24079-PA | 14..389 | 17..386 | 378 | 27.5 | Plus |
Dsim\GD11759-PA | 412 | GD11759-PA | 5..399 | 4..387 | 369 | 26.7 | Plus |
Dsim\GD23989-PA | 438 | GD23989-PA | 12..423 | 8..386 | 369 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10736-PA | 531 | GJ10736-PA | 1..531 | 1..521 | 2146 | 78.8 | Plus |
Dvir\GJ14923-PA | 455 | GJ14923-PA | 40..425 | 23..392 | 411 | 27.8 | Plus |
Dvir\GJ22351-PA | 453 | GJ22351-PA | 41..431 | 18..390 | 408 | 29 | Plus |
Dvir\GJ22352-PA | 430 | GJ22352-PA | 55..417 | 39..387 | 375 | 29.3 | Plus |
Dvir\GJ11869-PA | 435 | GJ11869-PA | 30..420 | 31..386 | 363 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13342-PA | 538 | GK13342-PA | 1..532 | 1..530 | 2359 | 83.2 | Plus |
Dwil\GK23284-PA | 446 | GK23284-PA | 48..424 | 25..390 | 414 | 29.4 | Plus |
Dwil\GK13672-PA | 468 | GK13672-PA | 43..431 | 13..387 | 408 | 28.5 | Plus |
Dwil\GK18310-PA | 436 | GK18310-PA | 9..421 | 6..386 | 373 | 26.6 | Plus |
Dwil\GK18231-PA | 415 | GK18231-PA | 6..392 | 5..388 | 371 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24438-PA | 530 | GE24438-PA | 1..530 | 1..530 | 2773 | 97.7 | Plus |
Dyak\GE14284-PA | 430 | GE14284-PA | 81..408 | 66..390 | 401 | 29.6 | Plus |
Dyak\GE14541-PA | 463 | GE14541-PA | 40..442 | 18..404 | 388 | 26.9 | Plus |
Dyak\GE12764-PA | 453 | GE12764-PA | 14..389 | 17..386 | 378 | 27.5 | Plus |
Dyak\GE14285-PA | 412 | GE14285-PA | 1..410 | 1..395 | 371 | 26.3 | Plus |
Translation from 159 to 1751
> RE55542.hyp MIRILVGVICAVLWSPVSQALTPGLQVAKQWKLLRYNFEPQAPVSDPNFY NPQNVLITGLAVTDDRIFVATPKLFSGVPSTVSWVSKAQFGDSPTLNAFP DWTFSNTGRSDFNCSDLILTSVYRLRVDSCNRIWLLDAGISRSLEDYEIT CPPKILVVDLATDRVVRRIDFPPEVLRGESLFTNMVIDETTAKGCDDVFV YITDTVEPGIIVYDSGKDVTWRVSHPAMYPDPDFAQSEIHEHRFVLMDGV VGLTFDERTGVVYFQPLATDRVFSVHKNVLRAGPLPDGKMLDVKLVGKKS SQGIGLAVSPFDSSLIFSPLSETAIASWNPTTNQQSVLAFDRDQLQFVAD ITTTKSEPGVIYAIASKFHRFFLKNLNPNEFNNRIVRLELPAGNSLLGHR VALPAPPTHNSLLNYGVFNTHGQASTNALQTYFTSPALTTPFTTKSPFKF ETGGIVNYSARNPFTALNQGEAFPPSKATRDNFQRSYLDTLVGTTSPAAT TRVVSVPPTAFSGRHSGYYYQRTTRSVDQQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
yellow-e-PA | 530 | CG9792-PA | 1..530 | 1..530 | 2773 | 100 | Plus |
yellow-b-PB | 453 | CG17914-PB | 1..389 | 1..386 | 381 | 27.6 | Plus |
yellow-b-PA | 453 | CG17914-PA | 1..389 | 1..386 | 381 | 27.6 | Plus |
yellow-h-PA | 463 | CG1629-PA | 53..448 | 25..414 | 378 | 27.1 | Plus |
yellow-d-PA | 432 | CG9889-PA | 83..410 | 66..390 | 375 | 28.2 | Plus |