BDGP Sequence Production Resources |
Search the DGRC for RE55639
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 556 |
Well: | 39 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG32732-RA |
Protein status: | RE55639.pep: gold |
Preliminary Size: | 972 |
Sequenced Size: | 2169 |
Gene | Date | Evidence |
---|---|---|
CG3042 | 2002-01-01 | Sim4 clustering to Release 2 |
CG32732 | 2002-04-22 | Blastp of sequenced clone |
CG32732 | 2003-01-01 | Sim4 clustering to Release 3 |
CG32732 | 2008-04-29 | Release 5.5 accounting |
CG32732 | 2008-08-15 | Release 5.9 accounting |
CG32732 | 2008-12-18 | 5.12 accounting |
2169 bp (2169 high quality bases) assembled on 2002-04-22
GenBank Submission: BT003482
> RE55639.complete GCAGATTTCTCGACTTTATTTTCCTTATTTGGCTGTTGTTGTTTTGGGCC GCCGGTACCGCTTAGCTTTCTGTCTTCCTCTCTCTCTGTCTTTCTCTCTC GCTCCCACCAACGGCACCGCCATGGGTAAGAACACGAAGCGCAACAAGAA GACAAAACAGCAGCAACAGCAGCCACAACAAAACGGAGTAACTGCATCCG CATCCGGCACAGCAGTCGAGGATTTTGAGGACCAGCAGGCGGCCAGTTCG TTGCCCAGTTTAAACGGCAAAAAGAGGAGCCAACTAAACAAGCTCGTCGA GGAACTGCTTGACTTGGTGGAAAAGCAACCGGCGAATCCCAACGAGGAAT GGAAGCAGTACGGGCAGCTACAGGAGCTGCTCAAACAAATCATGATCCTG GAGGAGCCACTCAGCCAAGCAGTGTGTCCGCAGATCAGCGATTCCCCCGA CGATCAGACCCGTCTGGCCAAAGTGGAGGCGTTCAGTGCGTGGGCCAAAG ATGGCGGAGTTCACAGTGAGGGACTGGAGATAGCCATCTTTCCCGGCTAC CAACTGGGTCTGCGGGCCACCCGACCGTTGGCCAAGGATGAGCTGGTGCT CAGCGTGCCCCGGAAGCTCATCTTATCCGAGGAAAACAACTCCGATTGCC GCCTATTTGGCAAAATGACGCAGGCCACCCACTTGAACCTGGCCTATGAT CTGGTCATCGAGAAGATCCGTGGCGAGTTCAGCGAGTGGCGGCCCTACAT TGATGTTCTGCCTGCCAAATACAACACCGTGCTATACTTTACCACCAAGC AGATGGAGCTCCTCCGGGGCACCGCTGCAGCCGCTCTGGCAATGCGTCAG TGTCGCGTCATCGCCAAGCAGTACGCCTTCCTCTACAAGTACGCCCACAC CATGACTGAGCCGAGCACCGGGAACAGGAGCCATCCGGGCGAAAGAGGCC TCTTTTTCACGCAGCACGGACTCTGCTACAAGCTATACAGATGGGCCGTT TCCACAGTGATGACCCGGCAGAATTTGGTGCCCAGCGAAAAACAAGAATC AGAGGACGGGCCAAAATTGATCTCGGCTTTGATTCCGTACTGGGATATGG CGAACCATAGGCCGGGCAAGATAACCTCCTTCTATGCCACCGTGTCCAGG CAACTGGAATGCACCGCTCAGGAAGCTGTTAACACTGGAGAACAGTTTTT CATCTACTATGGCGATCGGTCGAATACTGATCTTCTAGTGCACAATGGTT TCGTAGACCCTAACAACACCAAGGACTATGTTAATATTCGTGTAGGCCTG AGTCTCACGGACGCTCTTGCTGCGAAGAGGGCAAGCATTCTGGACAAGCT GAACATCCGGCACACCGCAGAGCTGCGTGTGCTGCCTGCGCCGGATTTCA TTTCCAAGGAGTTGCTGGCATTCGTTCGGGTTTTCAAGATGAGCGCCGAG CAGTTGGATCACTGGTGCAGCGACTTGGACCGGGCCGGGGACCTGCTGCA CATCGACTGCGCCCTGGAGACGGATCACGAGACACGAACGTGGCAGTTCC TGGAGGACAGGTTGAAGCTGCTTCTGGCCGTCTTTAATAAGGAAATGCAT GAGGCCGACGAAGTGAAGGAGCTGGAACTCAAGGATGGCCAGGAGATCGA GCTCATGCTCTTCCTGTATCGCCGTTTAGAGCGAAGCATTCTCGCCGGAG CTTTACAATACGCCCAAGAGCATCGCAAGGTCTAGGGATTTAAGCAGACA ACCCACAAAATTCGAGTGGCCATCGAAAGCGAAATCAATAACTCAGTCTA GCATTAGCAATTAGCTATCTATTTTTTTTTTTCTACCATTACTTAACTTA TTTTAACTGAAAGTTTAAGTCAACAGGTTTTGAAGTTGGATACCAAAATA ACTTATAATTCTACAACGATGGATTTGTTGTACATTGAGTAACGGAATAT TCTGCTAGATTTTAAACTCGTGTTCGTCTAGTGTGCTACGCGCATTCTAG GATATAGCGTTTTATTGTTTTATGTTTGTTTATTTTATTAATTACAATCA TGACAGTTTTAGTATTTTGGAATTAAAAATGAAGTCTAACAGCGCAATGT AACCTTTTATAATTTTGTCAAGAAGTTTTTATGACTAAATATAAGATAGG CCAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32732-RA | 2360 | CG32732-RA | 188..2356 | 1..2169 | 10815 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 6859882..6860871 | 990..1 | 4950 | 100 | Minus |
chrX | 22417052 | chrX | 6850190..6851090 | 2150..1248 | 4405 | 99.4 | Minus |
chrX | 22417052 | chrX | 6851143..6851403 | 1248..988 | 1305 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6911 | 106..293 | 182 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6858 | 106..214 | 178 | 64.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1155 | 106..185 | 165 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2411 | 106..215 | 151 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2734..2838 | 111..213 | 151 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6814 | 120..215 | 150 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6866 | 106..216 | 147 | 62.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1148 | 105..204 | 146 | 64 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1183 | 106..226 | 141 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2380 | 141..214 | 138 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6851 | 150..293 | 130 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2431 | 106..214 | 128 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2563 | 106..201 | 125 | 60.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3293..3351 | 154..213 | 117 | 68.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6792 | 152..214 | 116 | 68.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1069..1146 | 136..214 | 114 | 65.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 6850188..6851089 | 1249..2152 | 99 | <- | Minus |
chrX | 6851143..6851400 | 991..1248 | 100 | <- | Minus |
chrX | 6859882..6860871 | 1..990 | 95 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32732-RA | 1..1614 | 122..1735 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32732-RA | 1..1614 | 122..1735 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32732-RA | 1..1614 | 122..1735 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32732-RA | 1..1614 | 122..1735 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32732-RA | 1..1614 | 122..1735 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32732-RA | 1..2152 | 1..2152 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32732-RA | 1..2152 | 1..2152 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32732-RA | 38..2189 | 1..2152 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32732-RA | 1..2152 | 1..2152 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG32732-RA | 38..2189 | 1..2152 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6958032..6958935 | 1249..2152 | 99 | <- | Minus |
X | 6958989..6959246 | 991..1248 | 100 | <- | Minus |
X | 6967724..6968713 | 1..990 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6958032..6958935 | 1249..2152 | 99 | <- | Minus |
X | 6958989..6959246 | 991..1248 | 100 | <- | Minus |
X | 6967724..6968713 | 1..990 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6958032..6958935 | 1249..2152 | 99 | <- | Minus |
X | 6958989..6959246 | 991..1248 | 100 | <- | Minus |
X | 6967724..6968713 | 1..990 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 6852065..6852968 | 1249..2152 | 99 | <- | Minus |
arm_X | 6853022..6853279 | 991..1248 | 100 | <- | Minus |
arm_X | 6861757..6862746 | 1..990 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6966130..6967033 | 1249..2152 | 99 | <- | Minus |
X | 6967087..6967344 | 991..1248 | 100 | <- | Minus |
X | 6975822..6976811 | 1..990 | 100 | Minus |
Translation from 0 to 1734
> RE55639.hyp QISRLYFPYLAVVVLGRRYRLAFCLPLSLSFSLAPTNGTAMGKNTKRNKK TKQQQQQPQQNGVTASASGTAVEDFEDQQAASSLPSLNGKKRSQLNKLVE ELLDLVEKQPANPNEEWKQYGQLQELLKQIMILEEPLSQAVCPQISDSPD DQTRLAKVEAFSAWAKDGGVHSEGLEIAIFPGYQLGLRATRPLAKDELVL SVPRKLILSEENNSDCRLFGKMTQATHLNLAYDLVIEKIRGEFSEWRPYI DVLPAKYNTVLYFTTKQMELLRGTAAAALAMRQCRVIAKQYAFLYKYAHT MTEPSTGNRSHPGERGLFFTQHGLCYKLYRWAVSTVMTRQNLVPSEKQES EDGPKLISALIPYWDMANHRPGKITSFYATVSRQLECTAQEAVNTGEQFF IYYGDRSNTDLLVHNGFVDPNNTKDYVNIRVGLSLTDALAAKRASILDKL NIRHTAELRVLPAPDFISKELLAFVRVFKMSAEQLDHWCSDLDRAGDLLH IDCALETDHETRTWQFLEDRLKLLLAVFNKEMHEADEVKELELKDGQEIE LMLFLYRRLERSILAGALQYAQEHRKV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32732-PA | 537 | CG32732-PA | 1..537 | 41..577 | 2776 | 100 | Plus |
Translation from 121 to 1734
> RE55639.pep MGKNTKRNKKTKQQQQQPQQNGVTASASGTAVEDFEDQQAASSLPSLNGK KRSQLNKLVEELLDLVEKQPANPNEEWKQYGQLQELLKQIMILEEPLSQA VCPQISDSPDDQTRLAKVEAFSAWAKDGGVHSEGLEIAIFPGYQLGLRAT RPLAKDELVLSVPRKLILSEENNSDCRLFGKMTQATHLNLAYDLVIEKIR GEFSEWRPYIDVLPAKYNTVLYFTTKQMELLRGTAAAALAMRQCRVIAKQ YAFLYKYAHTMTEPSTGNRSHPGERGLFFTQHGLCYKLYRWAVSTVMTRQ NLVPSEKQESEDGPKLISALIPYWDMANHRPGKITSFYATVSRQLECTAQ EAVNTGEQFFIYYGDRSNTDLLVHNGFVDPNNTKDYVNIRVGLSLTDALA AKRASILDKLNIRHTAELRVLPAPDFISKELLAFVRVFKMSAEQLDHWCS DLDRAGDLLHIDCALETDHETRTWQFLEDRLKLLLAVFNKEMHEADEVKE LELKDGQEIELMLFLYRRLERSILAGALQYAQEHRKV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21412-PA | 1017 | GF21412-PA | 764..1017 | 286..537 | 737 | 59 | Plus |
Dana\GF21412-PA | 1017 | GF21412-PA | 47..292 | 43..290 | 599 | 48 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17647-PA | 544 | GG17647-PA | 23..544 | 21..537 | 2487 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12451-PA | 573 | GH12451-PA | 1..573 | 1..537 | 1461 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG32732-PA | 537 | CG32732-PA | 1..537 | 1..537 | 2776 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21676-PA | 593 | GI21676-PA | 98..593 | 41..537 | 1521 | 59.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13316-PA | 568 | GL13316-PA | 37..568 | 24..537 | 1669 | 62 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17108-PA | 568 | GA17108-PA | 37..568 | 24..537 | 1668 | 61.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17489-PA | 537 | GM17489-PA | 21..537 | 21..537 | 2633 | 94.6 | Plus |
Dsec\GM17493-PA | 98 | GM17493-PA | 1..98 | 440..537 | 501 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16174-PA | 395 | GD16174-PA | 1..383 | 91..473 | 1995 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16703-PA | 539 | GJ16703-PA | 21..539 | 18..537 | 1493 | 57.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16171-PA | 511 | GK16171-PA | 20..511 | 48..537 | 1548 | 60 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17555-PA | 548 | GE17555-PA | 25..548 | 21..537 | 2562 | 91.2 | Plus |