Clone RE55639 Report

Search the DGRC for RE55639

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:556
Well:39
Vector:pFlc-1
Associated Gene/TranscriptCG32732-RA
Protein status:RE55639.pep: gold
Preliminary Size:972
Sequenced Size:2169

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3042 2002-01-01 Sim4 clustering to Release 2
CG32732 2002-04-22 Blastp of sequenced clone
CG32732 2003-01-01 Sim4 clustering to Release 3
CG32732 2008-04-29 Release 5.5 accounting
CG32732 2008-08-15 Release 5.9 accounting
CG32732 2008-12-18 5.12 accounting

Clone Sequence Records

RE55639.complete Sequence

2169 bp (2169 high quality bases) assembled on 2002-04-22

GenBank Submission: BT003482

> RE55639.complete
GCAGATTTCTCGACTTTATTTTCCTTATTTGGCTGTTGTTGTTTTGGGCC
GCCGGTACCGCTTAGCTTTCTGTCTTCCTCTCTCTCTGTCTTTCTCTCTC
GCTCCCACCAACGGCACCGCCATGGGTAAGAACACGAAGCGCAACAAGAA
GACAAAACAGCAGCAACAGCAGCCACAACAAAACGGAGTAACTGCATCCG
CATCCGGCACAGCAGTCGAGGATTTTGAGGACCAGCAGGCGGCCAGTTCG
TTGCCCAGTTTAAACGGCAAAAAGAGGAGCCAACTAAACAAGCTCGTCGA
GGAACTGCTTGACTTGGTGGAAAAGCAACCGGCGAATCCCAACGAGGAAT
GGAAGCAGTACGGGCAGCTACAGGAGCTGCTCAAACAAATCATGATCCTG
GAGGAGCCACTCAGCCAAGCAGTGTGTCCGCAGATCAGCGATTCCCCCGA
CGATCAGACCCGTCTGGCCAAAGTGGAGGCGTTCAGTGCGTGGGCCAAAG
ATGGCGGAGTTCACAGTGAGGGACTGGAGATAGCCATCTTTCCCGGCTAC
CAACTGGGTCTGCGGGCCACCCGACCGTTGGCCAAGGATGAGCTGGTGCT
CAGCGTGCCCCGGAAGCTCATCTTATCCGAGGAAAACAACTCCGATTGCC
GCCTATTTGGCAAAATGACGCAGGCCACCCACTTGAACCTGGCCTATGAT
CTGGTCATCGAGAAGATCCGTGGCGAGTTCAGCGAGTGGCGGCCCTACAT
TGATGTTCTGCCTGCCAAATACAACACCGTGCTATACTTTACCACCAAGC
AGATGGAGCTCCTCCGGGGCACCGCTGCAGCCGCTCTGGCAATGCGTCAG
TGTCGCGTCATCGCCAAGCAGTACGCCTTCCTCTACAAGTACGCCCACAC
CATGACTGAGCCGAGCACCGGGAACAGGAGCCATCCGGGCGAAAGAGGCC
TCTTTTTCACGCAGCACGGACTCTGCTACAAGCTATACAGATGGGCCGTT
TCCACAGTGATGACCCGGCAGAATTTGGTGCCCAGCGAAAAACAAGAATC
AGAGGACGGGCCAAAATTGATCTCGGCTTTGATTCCGTACTGGGATATGG
CGAACCATAGGCCGGGCAAGATAACCTCCTTCTATGCCACCGTGTCCAGG
CAACTGGAATGCACCGCTCAGGAAGCTGTTAACACTGGAGAACAGTTTTT
CATCTACTATGGCGATCGGTCGAATACTGATCTTCTAGTGCACAATGGTT
TCGTAGACCCTAACAACACCAAGGACTATGTTAATATTCGTGTAGGCCTG
AGTCTCACGGACGCTCTTGCTGCGAAGAGGGCAAGCATTCTGGACAAGCT
GAACATCCGGCACACCGCAGAGCTGCGTGTGCTGCCTGCGCCGGATTTCA
TTTCCAAGGAGTTGCTGGCATTCGTTCGGGTTTTCAAGATGAGCGCCGAG
CAGTTGGATCACTGGTGCAGCGACTTGGACCGGGCCGGGGACCTGCTGCA
CATCGACTGCGCCCTGGAGACGGATCACGAGACACGAACGTGGCAGTTCC
TGGAGGACAGGTTGAAGCTGCTTCTGGCCGTCTTTAATAAGGAAATGCAT
GAGGCCGACGAAGTGAAGGAGCTGGAACTCAAGGATGGCCAGGAGATCGA
GCTCATGCTCTTCCTGTATCGCCGTTTAGAGCGAAGCATTCTCGCCGGAG
CTTTACAATACGCCCAAGAGCATCGCAAGGTCTAGGGATTTAAGCAGACA
ACCCACAAAATTCGAGTGGCCATCGAAAGCGAAATCAATAACTCAGTCTA
GCATTAGCAATTAGCTATCTATTTTTTTTTTTCTACCATTACTTAACTTA
TTTTAACTGAAAGTTTAAGTCAACAGGTTTTGAAGTTGGATACCAAAATA
ACTTATAATTCTACAACGATGGATTTGTTGTACATTGAGTAACGGAATAT
TCTGCTAGATTTTAAACTCGTGTTCGTCTAGTGTGCTACGCGCATTCTAG
GATATAGCGTTTTATTGTTTTATGTTTGTTTATTTTATTAATTACAATCA
TGACAGTTTTAGTATTTTGGAATTAAAAATGAAGTCTAACAGCGCAATGT
AACCTTTTATAATTTTGTCAAGAAGTTTTTATGACTAAATATAAGATAGG
CCAAAAAAAAAAAAAAAAA

RE55639.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32732-RA 2360 CG32732-RA 188..2356 1..2169 10815 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6859882..6860871 990..1 4950 100 Minus
chrX 22417052 chrX 6850190..6851090 2150..1248 4405 99.4 Minus
chrX 22417052 chrX 6851143..6851403 1248..988 1305 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:03:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6967724..6968713 990..1 4950 100 Minus
X 23542271 X 6958015..6958936 2169..1248 4580 99.8 Minus
X 23542271 X 6958989..6959249 1248..988 1305 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6975822..6976811 990..1 4950 100 Minus
X 23527363 X 6966113..6967034 2169..1248 4580 99.7 Minus
X 23527363 X 6967087..6967347 1248..988 1305 100 Minus
Blast to na_te.dros performed 2019-03-16 12:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6911 106..293 182 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6858 106..214 178 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1076..1155 106..185 165 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2411 106..215 151 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2734..2838 111..213 151 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6814 120..215 150 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6866 106..216 147 62.2 Plus
roo 9092 roo DM_ROO 9092bp 1054..1148 105..204 146 64 Plus
roo 9092 roo DM_ROO 9092bp 1064..1183 106..226 141 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2380 141..214 138 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6851 150..293 130 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2431 106..214 128 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2466..2563 106..201 125 60.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3293..3351 154..213 117 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6792 152..214 116 68.8 Plus
roo 9092 roo DM_ROO 9092bp 1069..1146 136..214 114 65.9 Plus

RE55639.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:36:55 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6850188..6851089 1249..2152 99 <- Minus
chrX 6851143..6851400 991..1248 100 <- Minus
chrX 6859882..6860871 1..990 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:31:13 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
CG32732-RA 1..1614 122..1735 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:57:59 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
CG32732-RA 1..1614 122..1735 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:33:04 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
CG32732-RA 1..1614 122..1735 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:51:22 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
CG32732-RA 1..1614 122..1735 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:05 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
CG32732-RA 1..1614 122..1735 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:31:13 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
CG32732-RA 1..2152 1..2152 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:57:58 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
CG32732-RA 1..2152 1..2152 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:33:04 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
CG32732-RA 38..2189 1..2152 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:51:23 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
CG32732-RA 1..2152 1..2152 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:05 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
CG32732-RA 38..2189 1..2152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:55 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
X 6958032..6958935 1249..2152 99 <- Minus
X 6958989..6959246 991..1248 100 <- Minus
X 6967724..6968713 1..990 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:55 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
X 6958032..6958935 1249..2152 99 <- Minus
X 6958989..6959246 991..1248 100 <- Minus
X 6967724..6968713 1..990 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:55 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
X 6958032..6958935 1249..2152 99 <- Minus
X 6958989..6959246 991..1248 100 <- Minus
X 6967724..6968713 1..990 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:33:04 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6852065..6852968 1249..2152 99 <- Minus
arm_X 6853022..6853279 991..1248 100 <- Minus
arm_X 6861757..6862746 1..990 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:23:16 Download gff for RE55639.complete
Subject Subject Range Query Range Percent Splice Strand
X 6966130..6967033 1249..2152 99 <- Minus
X 6967087..6967344 991..1248 100 <- Minus
X 6975822..6976811 1..990 100   Minus

RE55639.hyp Sequence

Translation from 0 to 1734

> RE55639.hyp
QISRLYFPYLAVVVLGRRYRLAFCLPLSLSFSLAPTNGTAMGKNTKRNKK
TKQQQQQPQQNGVTASASGTAVEDFEDQQAASSLPSLNGKKRSQLNKLVE
ELLDLVEKQPANPNEEWKQYGQLQELLKQIMILEEPLSQAVCPQISDSPD
DQTRLAKVEAFSAWAKDGGVHSEGLEIAIFPGYQLGLRATRPLAKDELVL
SVPRKLILSEENNSDCRLFGKMTQATHLNLAYDLVIEKIRGEFSEWRPYI
DVLPAKYNTVLYFTTKQMELLRGTAAAALAMRQCRVIAKQYAFLYKYAHT
MTEPSTGNRSHPGERGLFFTQHGLCYKLYRWAVSTVMTRQNLVPSEKQES
EDGPKLISALIPYWDMANHRPGKITSFYATVSRQLECTAQEAVNTGEQFF
IYYGDRSNTDLLVHNGFVDPNNTKDYVNIRVGLSLTDALAAKRASILDKL
NIRHTAELRVLPAPDFISKELLAFVRVFKMSAEQLDHWCSDLDRAGDLLH
IDCALETDHETRTWQFLEDRLKLLLAVFNKEMHEADEVKELELKDGQEIE
LMLFLYRRLERSILAGALQYAQEHRKV*

RE55639.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32732-PA 537 CG32732-PA 1..537 41..577 2776 100 Plus

RE55639.pep Sequence

Translation from 121 to 1734

> RE55639.pep
MGKNTKRNKKTKQQQQQPQQNGVTASASGTAVEDFEDQQAASSLPSLNGK
KRSQLNKLVEELLDLVEKQPANPNEEWKQYGQLQELLKQIMILEEPLSQA
VCPQISDSPDDQTRLAKVEAFSAWAKDGGVHSEGLEIAIFPGYQLGLRAT
RPLAKDELVLSVPRKLILSEENNSDCRLFGKMTQATHLNLAYDLVIEKIR
GEFSEWRPYIDVLPAKYNTVLYFTTKQMELLRGTAAAALAMRQCRVIAKQ
YAFLYKYAHTMTEPSTGNRSHPGERGLFFTQHGLCYKLYRWAVSTVMTRQ
NLVPSEKQESEDGPKLISALIPYWDMANHRPGKITSFYATVSRQLECTAQ
EAVNTGEQFFIYYGDRSNTDLLVHNGFVDPNNTKDYVNIRVGLSLTDALA
AKRASILDKLNIRHTAELRVLPAPDFISKELLAFVRVFKMSAEQLDHWCS
DLDRAGDLLHIDCALETDHETRTWQFLEDRLKLLLAVFNKEMHEADEVKE
LELKDGQEIELMLFLYRRLERSILAGALQYAQEHRKV*

RE55639.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21412-PA 1017 GF21412-PA 764..1017 286..537 737 59 Plus
Dana\GF21412-PA 1017 GF21412-PA 47..292 43..290 599 48 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17647-PA 544 GG17647-PA 23..544 21..537 2487 89.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12451-PA 573 GH12451-PA 1..573 1..537 1461 53.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32732-PA 537 CG32732-PA 1..537 1..537 2776 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21676-PA 593 GI21676-PA 98..593 41..537 1521 59.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13316-PA 568 GL13316-PA 37..568 24..537 1669 62 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17108-PA 568 GA17108-PA 37..568 24..537 1668 61.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17489-PA 537 GM17489-PA 21..537 21..537 2633 94.6 Plus
Dsec\GM17493-PA 98 GM17493-PA 1..98 440..537 501 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16174-PA 395 GD16174-PA 1..383 91..473 1995 95.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16703-PA 539 GJ16703-PA 21..539 18..537 1493 57.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16171-PA 511 GK16171-PA 20..511 48..537 1548 60 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17555-PA 548 GE17555-PA 25..548 21..537 2562 91.2 Plus