BDGP Sequence Production Resources |
Search the DGRC for RE55741
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 557 |
Well: | 41 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Mp20-RA |
Protein status: | RE55741.pep: gold |
Sequenced Size: | 891 |
Gene | Date | Evidence |
---|---|---|
CG4696 | 2001-12-14 | Blastp of sequenced clone |
CG4696 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4696 | 2003-01-01 | Sim4 clustering to Release 3 |
Mp20 | 2008-04-29 | Release 5.5 accounting |
Mp20 | 2008-08-15 | Release 5.9 accounting |
Mp20 | 2008-12-18 | 5.12 accounting |
891 bp (891 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071496
> RE55741.complete GTCAGTGTTAGCTTGTCAGAGCTTTAGTGAAGATCCCGCAGGACCCGAAA CCAAAAACCAAGAATCAAACATGTCTCTTGAGCGTGCCGTTCGTGCCAAG ATTGCCAGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGAT CGAGGCCATCATTGCCGAGAAGTTCCCCGCCGGCCAGTCCTACGAGGATG TGCTCAAGGACGGTCAGGTGCTGTGCAAACTGATCAACGTGCTGTCGCCC AATGCCGTGCCCAAGGTCAACTCCTCGGGCGGCCAGTTCAAGTTCATGGA GAACATCAACAACTTCCAGAAGGCCCTGAAGGAGTACGGTGTGCCCGACA TCGATGTCTTCCAGACCGTCGATCTGTACGAGAAGAAGGATATTGCCAAC GTTACCAACACCATCTTCGCTTTGGGCCGTGCCACCTACAAGCATGCCGA CTTCAAGGGTCCCTTCCTGGGCCCCAAGCCCGCCGATGAGTGCAAGCGCG ATTTCACCGAAGAGCAGCTGAAGGCTGGCCAGACCATTGTGGGTCTGCAG GCCGGTTCCAACAAGGGAGCCACCCAGGCTGGCCAGAACCTCGGCGCTGG CCGCAAGATCCTGCTCGGCAAGTAAGCGCCAAAGGATGGCCAGGATGTCC ACACCCTTTTCTACACTTATGCTAAGTGAACACACCCATATATATTTTGT ATGATGAAAAACATGAAGAACACAATGATATTCCTCACCAAAGCAAAACT CAACACCAATGAACACACACTCACACAAAACAACACATAAAAGCAACGCA AAGGCTTGTCGCCTTATATTAAGTATACGCCTAAGTTAATCTATTTATGA GTACAATAAAGTAATTCAAAGAACCCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9134678..9135120 | 434..876 | 2200 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 9134276..9134610 | 99..433 | 1645 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 9134035..9134133 | 2..100 | 495 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13247317..13247760 | 434..877 | 2220 | 100 | Plus |
2R | 25286936 | 2R | 13246915..13247249 | 99..433 | 1675 | 100 | Plus |
2R | 25286936 | 2R | 13246674..13246772 | 2..100 | 495 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13248516..13248959 | 434..877 | 2220 | 100 | Plus |
2R | 25260384 | 2R | 13248114..13248448 | 99..433 | 1675 | 100 | Plus |
2R | 25260384 | 2R | 13247873..13247971 | 2..100 | 495 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9134034..9134133 | 1..100 | 99 | -> | Plus |
chr2R | 9134278..9134610 | 101..433 | 99 | -> | Plus |
chr2R | 9134678..9135120 | 434..876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mp20-RB | 1..555 | 71..625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mp20-RB | 1..555 | 71..625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mp20-RA | 1..555 | 71..625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mp20-RB | 1..555 | 71..625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mp20-RA | 1..555 | 71..625 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mp20-RA | 22..897 | 1..876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mp20-RA | 22..897 | 1..876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mp20-RA | 4..879 | 1..876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mp20-RA | 22..897 | 1..876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mp20-RA | 4..879 | 1..876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13246673..13246772 | 1..100 | 99 | -> | Plus |
2R | 13247317..13247759 | 434..876 | 100 | Plus | |
2R | 13246917..13247249 | 101..433 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13246673..13246772 | 1..100 | 99 | -> | Plus |
2R | 13247317..13247759 | 434..876 | 100 | Plus | |
2R | 13246917..13247249 | 101..433 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13246673..13246772 | 1..100 | 99 | -> | Plus |
2R | 13247317..13247759 | 434..876 | 100 | Plus | |
2R | 13246917..13247249 | 101..433 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9134178..9134277 | 1..100 | 99 | -> | Plus |
arm_2R | 9134422..9134754 | 101..433 | 100 | -> | Plus |
arm_2R | 9134822..9135264 | 434..876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13248116..13248448 | 101..433 | 100 | -> | Plus |
2R | 13248516..13248958 | 434..876 | 100 | Plus | |
2R | 13247872..13247971 | 1..100 | 99 | -> | Plus |
Translation from 0 to 624
> RE55741.hyp SVLACQSFSEDPAGPETKNQESNMSLERAVRAKIASKRNPEMDKEAQEWI EAIIAEKFPAGQSYEDVLKDGQVLCKLINVLSPNAVPKVNSSGGQFKFME NINNFQKALKEYGVPDIDVFQTVDLYEKKDIANVTNTIFALGRATYKHAD FKGPFLGPKPADECKRDFTEEQLKAGQTIVGLQAGSNKGATQAGQNLGAG RKILLGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mp20-PA | 184 | CG4696-PA | 1..184 | 24..207 | 945 | 100 | Plus |
Mp20-PC | 189 | CG4696-PC | 1..184 | 24..207 | 945 | 100 | Plus |
CG5023-PA | 169 | CG5023-PA | 4..159 | 38..194 | 441 | 53.5 | Plus |
Chd64-PB | 188 | CG14996-PB | 4..186 | 19..201 | 365 | 41.4 | Plus |
Chd64-PC | 175 | CG14996-PC | 3..173 | 31..201 | 364 | 43.7 | Plus |
Translation from 70 to 624
> RE55741.pep MSLERAVRAKIASKRNPEMDKEAQEWIEAIIAEKFPAGQSYEDVLKDGQV LCKLINVLSPNAVPKVNSSGGQFKFMENINNFQKALKEYGVPDIDVFQTV DLYEKKDIANVTNTIFALGRATYKHADFKGPFLGPKPADECKRDFTEEQL KAGQTIVGLQAGSNKGATQAGQNLGAGRKILLGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13684-PA | 184 | GF13684-PA | 1..184 | 1..184 | 889 | 90.2 | Plus |
Dana\GF17639-PA | 169 | GF17639-PA | 4..160 | 15..172 | 442 | 52.5 | Plus |
Dana\GF23888-PA | 188 | GF23888-PA | 18..188 | 10..180 | 388 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20371-PA | 184 | GG20371-PA | 1..184 | 1..184 | 957 | 98.9 | Plus |
Dere\GG23757-PA | 169 | GG23757-PA | 4..160 | 15..172 | 449 | 53.2 | Plus |
Dere\GG14221-PA | 188 | GG14221-PA | 18..188 | 10..180 | 372 | 43.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21621-PA | 184 | GH21621-PA | 1..184 | 1..184 | 899 | 91.3 | Plus |
Dgri\GH23202-PA | 243 | GH23202-PA | 78..234 | 15..172 | 448 | 52.5 | Plus |
Dgri\GH15556-PA | 188 | GH15556-PA | 18..188 | 10..180 | 376 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mp20-PA | 184 | CG4696-PA | 1..184 | 1..184 | 945 | 100 | Plus |
Mp20-PC | 189 | CG4696-PC | 1..184 | 1..184 | 945 | 100 | Plus |
CG5023-PA | 169 | CG5023-PA | 4..159 | 15..171 | 441 | 53.5 | Plus |
Chd64-PC | 175 | CG14996-PC | 3..173 | 8..178 | 364 | 43.7 | Plus |
Chd64-PB | 188 | CG14996-PB | 18..186 | 10..178 | 362 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20073-PA | 184 | GI20073-PA | 1..184 | 1..184 | 903 | 91.8 | Plus |
Dmoj\GI22717-PA | 169 | GI22717-PA | 4..160 | 15..172 | 452 | 53.2 | Plus |
Dmoj\GI16831-PA | 188 | GI16831-PA | 18..188 | 10..180 | 384 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11002-PA | 184 | GL11002-PA | 1..184 | 1..184 | 940 | 95.7 | Plus |
Dper\GL12090-PA | 266 | GL12090-PA | 4..158 | 15..170 | 429 | 51.3 | Plus |
Dper\GL12739-PA | 188 | GL12739-PA | 18..188 | 10..180 | 383 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18362-PA | 184 | GA18362-PA | 1..184 | 1..184 | 940 | 95.7 | Plus |
Dpse\GA18602-PA | 169 | GA18602-PA | 4..160 | 15..172 | 440 | 51.9 | Plus |
Dpse\GA13413-PA | 188 | GA13413-PA | 18..188 | 10..180 | 383 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21458-PA | 216 | GM21458-PA | 1..196 | 1..184 | 799 | 81.1 | Plus |
Dsec\GM23099-PA | 182 | GM23099-PA | 17..173 | 15..172 | 448 | 53.2 | Plus |
Dsec\GM14014-PA | 188 | GM14014-PA | 18..188 | 10..180 | 372 | 43.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10956-PA | 184 | GD10956-PA | 1..184 | 1..184 | 958 | 98.4 | Plus |
Dsim\GD19339-PA | 106 | GD19339-PA | 1..97 | 76..172 | 294 | 55.7 | Plus |
Dsim\GD13293-PA | 74 | GD13293-PA | 15..74 | 121..180 | 156 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21167-PA | 184 | GJ21167-PA | 1..184 | 1..184 | 898 | 91.8 | Plus |
Dvir\GJ23442-PA | 214 | GJ23442-PA | 49..205 | 15..172 | 450 | 53.8 | Plus |
Dvir\GJ12578-PA | 188 | GJ12578-PA | 18..188 | 10..180 | 388 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17978-PA | 184 | GK17978-PA | 1..184 | 1..184 | 950 | 97.8 | Plus |
Dwil\GK22375-PA | 169 | GK22375-PA | 4..160 | 15..172 | 438 | 51.9 | Plus |
Dwil\GK10106-PA | 188 | GK10106-PA | 18..188 | 10..180 | 387 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Mp20-PA | 184 | GE12530-PA | 1..184 | 1..184 | 949 | 97.8 | Plus |
Dyak\GE20649-PA | 188 | GE20649-PA | 18..188 | 10..180 | 372 | 43.7 | Plus |
Dyak\GE25653-PA | 117 | GE25653-PA | 4..108 | 15..120 | 293 | 50.9 | Plus |