BDGP Sequence Production Resources |
Search the DGRC for RE55814
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 558 |
Well: | 14 |
Vector: | pFlc-1 |
Associated Gene/Transcript | GstO1-RA |
Protein status: | RE55814.pep: gold |
Preliminary Size: | 954 |
Sequenced Size: | 965 |
Gene | Date | Evidence |
---|---|---|
CG6662 | 2001-12-14 | Blastp of sequenced clone |
CG6662 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6662 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6662 | 2008-04-29 | Release 5.5 accounting |
CG6662 | 2008-08-15 | Release 5.9 accounting |
CG6662 | 2008-12-18 | 5.12 accounting |
965 bp (965 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071499
> RE55814.complete AATTGTCATAACCCGCAAAACAGGTTGTGTTCCTTTCCAGAAGAAATTGT ATTGCCAATATGAGCAATACTCAGCACTTAACTATTGGCTCGCCAAAGCC CGTATTTCCGGATGATGGGATCTTAAAGCTGTATTCGATGCGCTTTTGCC CCTATGCACACCGTGTGCACCTGGTCCTGGATGCCAAAAAGATTCCCTAC CACGCTATCTACATCAATCTTCGCGACAAACCCGAGTGGTTCTCCCTGGT GAGCAGCTCCACAAAGGTGCCGGCACTGGAGCTGGTCAAGGAACAGGGAA ATCCTGTGCTGATCGAGTCGCTCATTATTTGTGACTACTTGGACGAAAAG TATCCGGAGGTGCCATTGTATCCCAAGGATCTGCTTAAAAAAGCCCAGGA GAAGATTTTAATCGAACGTTTCGGACAGTTCATCAATGCCTTCTACTACC TGTTGCTGCACGACAATCCCGAGCAGCTGGTTGACACCGATCACTATGCC GGATTGGTCGTTTATGAGGAGGAACTGAAGCGACGTTGTACCAAGTTCTT TGGTGGCGACAGCCCAGGCATGCTTGACTACATGATGTGGCCCTGGTGCG AGCGCTTTGACTCTCTGAAATACACTTTTGAACAAAAATTCGAATTGAGT CCGGAACGTTTTCCCACTTTGATTAAGTGGCGCGACTTGATGATCCAGGA TCGTGCTGTCAAGTGTTTCTATCTGGATGGACAGACCCATGCCAAATACA TGAACTCCCGGCGATCGGGCCAGGCCGATTATAATATGCTATACAATGAG GCCAAACGTGTCAAATTGGGGTAGTCTACGGGATGATGGCGTTTCCACTT CAGCATTGTACCTTTTGCACATATAACATGTAACACATGTACCTACTACG GCAGCATTATTGTGATTGAAAAATAAATCTTTGCATTTTCATTGTTTACA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 8516108..8516692 | 671..87 | 2910 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 8515717..8515871 | 948..794 | 775 | 100 | Minus |
chr3L | 24539361 | chr3L | 8515927..8516049 | 793..671 | 615 | 100 | Minus |
chr3L | 24539361 | chr3L | 8516748..8516835 | 88..1 | 380 | 95.5 | Minus |
chr3L | 24539361 | chr3L | 8512688..8512798 | 129..239 | 195 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 8524134..8524718 | 671..87 | 2925 | 100 | Minus |
3L | 28110227 | 3L | 8523743..8523897 | 948..794 | 775 | 100 | Minus |
3L | 28110227 | 3L | 8523953..8524075 | 793..671 | 615 | 100 | Minus |
3L | 28110227 | 3L | 8524774..8524861 | 88..1 | 425 | 98.9 | Minus |
3L | 28110227 | 3L | 8520715..8520825 | 129..239 | 195 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 8517234..8517818 | 671..87 | 2925 | 100 | Minus |
3L | 28103327 | 3L | 8516843..8516997 | 948..794 | 775 | 100 | Minus |
3L | 28103327 | 3L | 8517053..8517175 | 793..671 | 615 | 100 | Minus |
3L | 28103327 | 3L | 8517874..8517961 | 88..1 | 425 | 98.8 | Minus |
3L | 28103327 | 3L | 8513815..8513925 | 129..239 | 195 | 78.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8515716..8515871 | 794..949 | 99 | <- | Minus |
chr3L | 8515927..8516048 | 672..793 | 100 | <- | Minus |
chr3L | 8516108..8516691 | 88..671 | 99 | <- | Minus |
chr3L | 8516749..8516835 | 1..87 | 95 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6662-RA | 1..765 | 60..824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6662-RA | 1..765 | 60..824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GstO1-RA | 1..765 | 60..824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6662-RA | 1..765 | 60..824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GstO1-RA | 1..765 | 60..824 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6662-RA | 1..948 | 1..949 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6662-RA | 1..948 | 1..949 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GstO1-RA | 6..953 | 1..949 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6662-RA | 1..948 | 1..949 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GstO1-RA | 6..953 | 1..949 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8523742..8523897 | 794..949 | 99 | <- | Minus |
3L | 8523953..8524074 | 672..793 | 100 | <- | Minus |
3L | 8524134..8524717 | 88..671 | 100 | <- | Minus |
3L | 8524775..8524861 | 1..87 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8523742..8523897 | 794..949 | 99 | <- | Minus |
3L | 8523953..8524074 | 672..793 | 100 | <- | Minus |
3L | 8524134..8524717 | 88..671 | 100 | <- | Minus |
3L | 8524775..8524861 | 1..87 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8523742..8523897 | 794..949 | 99 | <- | Minus |
3L | 8523953..8524074 | 672..793 | 100 | <- | Minus |
3L | 8524134..8524717 | 88..671 | 100 | <- | Minus |
3L | 8524775..8524861 | 1..87 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8516842..8516997 | 794..949 | 99 | <- | Minus |
arm_3L | 8517053..8517174 | 672..793 | 100 | <- | Minus |
arm_3L | 8517234..8517817 | 88..671 | 100 | <- | Minus |
arm_3L | 8517875..8517961 | 1..87 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8517234..8517817 | 88..671 | 100 | <- | Minus |
3L | 8517875..8517961 | 1..87 | 98 | Minus | |
3L | 8516842..8516997 | 794..949 | 99 | <- | Minus |
3L | 8517053..8517174 | 672..793 | 100 | <- | Minus |
Translation from 59 to 823
> RE55814.pep MSNTQHLTIGSPKPVFPDDGILKLYSMRFCPYAHRVHLVLDAKKIPYHAI YINLRDKPEWFSLVSSSTKVPALELVKEQGNPVLIESLIICDYLDEKYPE VPLYPKDLLKKAQEKILIERFGQFINAFYYLLLHDNPEQLVDTDHYAGLV VYEEELKRRCTKFFGGDSPGMLDYMMWPWCERFDSLKYTFEQKFELSPER FPTLIKWRDLMIQDRAVKCFYLDGQTHAKYMNSRRSGQADYNMLYNEAKR VKLG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10159-PA | 252 | GF10159-PA | 1..251 | 1..253 | 1024 | 75.1 | Plus |
Dana\GF24331-PA | 243 | GF24331-PA | 1..243 | 1..248 | 718 | 54.8 | Plus |
Dana\GF10160-PA | 250 | GF10160-PA | 7..248 | 6..246 | 638 | 47.1 | Plus |
Dana\GF24330-PA | 243 | GF24330-PA | 1..240 | 1..244 | 630 | 48.2 | Plus |
Dana\GF10161-PA | 223 | GF10161-PA | 1..220 | 27..246 | 517 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15073-PA | 254 | GG15073-PA | 1..254 | 1..254 | 1207 | 87.4 | Plus |
Dere\GG14321-PA | 243 | GG14321-PA | 1..243 | 1..248 | 699 | 53.2 | Plus |
Dere\GG14320-PA | 241 | GG14320-PA | 1..240 | 1..244 | 695 | 51.6 | Plus |
Dere\GG15074-PA | 250 | GG15074-PA | 6..248 | 5..246 | 636 | 48.6 | Plus |
Dere\GG15075-PA | 248 | GG15075-PA | 9..245 | 11..246 | 600 | 49.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15265-PA | 243 | GH15265-PA | 1..243 | 1..248 | 709 | 53.6 | Plus |
Dgri\GH15264-PA | 241 | GH15264-PA | 1..240 | 1..244 | 658 | 48.8 | Plus |
Dgri\GH16193-PA | 249 | GH16193-PA | 6..248 | 5..247 | 603 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GstO1-PA | 254 | CG6662-PA | 1..254 | 1..254 | 1370 | 100 | Plus |
se-PA | 243 | CG6781-PA | 1..243 | 1..248 | 692 | 52.8 | Plus |
GstO3-PA | 241 | CG6776-PA | 1..240 | 1..244 | 684 | 50.8 | Plus |
GstO2-PB | 250 | CG6673-PB | 6..247 | 5..245 | 637 | 48.8 | Plus |
GstO2-PA | 251 | CG6673-PA | 6..247 | 5..245 | 572 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11974-PA | 243 | GI11974-PA | 1..243 | 1..248 | 697 | 52.8 | Plus |
Dmoj\GI11973-PA | 241 | GI11973-PA | 1..240 | 1..244 | 665 | 49.8 | Plus |
Dmoj\GI13342-PA | 251 | GI13342-PA | 1..248 | 1..248 | 632 | 48.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15565-PA | 253 | GL15565-PA | 1..251 | 1..252 | 940 | 68.3 | Plus |
Dper\GL15504-PA | 243 | GL15504-PA | 1..243 | 1..248 | 709 | 53.6 | Plus |
Dper\GL15503-PA | 241 | GL15503-PA | 1..240 | 1..244 | 670 | 51.2 | Plus |
Dper\GL15567-PA | 246 | GL15567-PA | 5..245 | 7..246 | 648 | 50.6 | Plus |
Dper\GL15566-PA | 250 | GL15566-PA | 6..248 | 5..246 | 638 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19760-PA | 243 | GA19760-PA | 1..243 | 1..244 | 914 | 68.4 | Plus |
Dpse\GA19859-PA | 243 | GA19859-PA | 1..243 | 1..248 | 711 | 53.6 | Plus |
Dpse\GA23844-PA | 241 | GA23844-PA | 1..240 | 1..244 | 661 | 50.8 | Plus |
Dpse\GA23449-PA | 246 | GA23449-PA | 5..245 | 7..246 | 654 | 51 | Plus |
Dpse\GA19769-PA | 250 | GA19769-PA | 6..248 | 5..246 | 636 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24930-PA | 254 | GM24930-PA | 1..254 | 1..254 | 1299 | 94.9 | Plus |
Dsec\GM25061-PA | 241 | GM25061-PA | 1..240 | 1..244 | 687 | 50.8 | Plus |
Dsec\GM24931-PA | 250 | GM24931-PA | 6..248 | 5..246 | 637 | 48.6 | Plus |
Dsec\GM25062-PA | 204 | GM25062-PA | 1..204 | 1..248 | 589 | 48.4 | Plus |
Dsec\GM24932-PA | 224 | GM24932-PA | 1..220 | 27..245 | 523 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12978-PA | 254 | GD12978-PA | 1..254 | 1..254 | 1283 | 93.7 | Plus |
Dsim\GD14100-PA | 243 | GD14100-PA | 1..243 | 1..248 | 700 | 53.2 | Plus |
Dsim\GD14099-PA | 241 | GD14099-PA | 1..240 | 1..244 | 683 | 51.2 | Plus |
Dsim\GD12979-PA | 250 | GD12979-PA | 6..248 | 5..246 | 636 | 48.6 | Plus |
Dsim\GD12980-PA | 212 | GD12980-PA | 1..208 | 39..245 | 473 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12198-PA | 241 | GJ12198-PA | 1..240 | 1..244 | 694 | 51.4 | Plus |
Dvir\GJ12199-PA | 243 | GJ12199-PA | 1..243 | 1..248 | 681 | 52.4 | Plus |
Dvir\GJ13170-PA | 249 | GJ13170-PA | 6..247 | 5..246 | 640 | 47.5 | Plus |
Dvir\GJ13171-PA | 222 | GJ13171-PA | 1..222 | 27..247 | 553 | 49.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20538-PA | 259 | GK20538-PA | 1..258 | 1..253 | 968 | 69.4 | Plus |
Dwil\GK20355-PA | 243 | GK20355-PA | 1..243 | 1..248 | 680 | 52 | Plus |
Dwil\GK20539-PA | 251 | GK20539-PA | 7..249 | 5..246 | 666 | 50.2 | Plus |
Dwil\GK20354-PA | 238 | GK20354-PA | 6..237 | 3..238 | 628 | 50 | Plus |
Dwil\GK20540-PA | 239 | GK20540-PA | 1..238 | 10..246 | 616 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21296-PA | 254 | GE21296-PA | 1..254 | 1..254 | 1157 | 84.3 | Plus |
Dyak\GE20749-PA | 243 | GE20749-PA | 1..243 | 1..248 | 697 | 53.2 | Plus |
Dyak\GE20748-PA | 241 | GE20748-PA | 1..240 | 1..244 | 696 | 52.5 | Plus |
Dyak\GE21297-PA | 250 | GE21297-PA | 6..248 | 5..246 | 633 | 48.1 | Plus |
Dyak\GE21298-PA | 224 | GE21298-PA | 1..221 | 27..246 | 539 | 47.7 | Plus |
Translation from 59 to 823
> RE55814.hyp MSNTQHLTIGSPKPVFPDDGILKLYSMRFCPYAHRVHLVLDAKKIPYHAI YINLRDKPEWFSLVSSSTKVPALELVKEQGNPVLIESLIICDYLDEKYPE VPLYPKDLLKKAQEKILIERFGQFINAFYYLLLHDNPEQLVDTDHYAGLV VYEEELKRRCTKFFGGDSPGMLDYMMWPWCERFDSLKYTFEQKFELSPER FPTLIKWRDLMIQDRAVKCFYLDGQTHAKYMNSRRSGQADYNMLYNEAKR VKLG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GstO1-PA | 254 | CG6662-PA | 1..254 | 1..254 | 1370 | 100 | Plus |
se-PA | 243 | CG6781-PA | 1..243 | 1..248 | 692 | 52.8 | Plus |
GstO3-PA | 241 | CG6776-PA | 1..240 | 1..244 | 684 | 50.8 | Plus |
GstO2-PB | 250 | CG6673-PB | 6..247 | 5..245 | 637 | 48.8 | Plus |
GstO2-PA | 251 | CG6673-PA | 6..247 | 5..245 | 572 | 45.9 | Plus |