BDGP Sequence Production Resources |
Search the DGRC for RE55868
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 558 |
Well: | 68 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG33786-RA |
Protein status: | RE55868.pep: gold |
Sequenced Size: | 1261 |
Gene | Date | Evidence |
---|---|---|
CG33005 | 2001-12-14 | Blastp of sequenced clone |
CG10438 | 2002-01-01 | Sim4 clustering to Release 2 |
CG33005 | 2003-01-01 | Sim4 clustering to Release 3 |
CG33786 | 2008-04-29 | Release 5.5 accounting |
CG33786 | 2008-08-15 | Release 5.9 accounting |
CG33785 | 2008-08-15 | Release 5.9 accounting |
CG33785 | 2008-12-18 | 5.12 accounting |
CG33786 | 2008-12-18 | 5.12 accounting |
1261 bp (1261 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071501
> RE55868.complete ATTTAACGTGCTCAAATCAAAAAACTAAACAGCGCGGATTCGGATTCTCC GAAACTATGTTGTTTTTCTGCCCGTCGTGCGGAAATATATTGATTATCGA GGAGGACACCAACTGCCATCGCTTCACGTGCAACACCTGCCCGTACATAT CGAAGATCAGGCGCAAGATCTCCACGAAAACCTTTCCACGCCTCAAGGAG GTGGATCACGTGCTGGGCGGCAAGGCGGCGTGGGAGAACGTAGACTCCAC GGACGCAGAGTGTCCAACGTGCGGCCATAAGCGGGCGTACTTTATGCAAA TCCAGACGCGGTCGGCGGATGAGCCCATGACCACGTTTTACAAGTGCTGC AACCACGAGTGCAACCACACCTGGCGAGACTAATGCGCCGCCTTCAAACG AGCCTTTATCGACTGCTCCGTGCTCACCACACATCCAGCAGAATGCAGCA CCAAGCGAGCGAGCTGAGGACTCCAGTGTGCGCGGTGGGCGACGAGGCTG CTCTCCAGTTGGCCCGCCAGTGCCTGCTTGGTGGCCAAGTGATTGCCCTG CCCACCGATACCGTGTATGGCCTGGCCTGCGATGCCAACAACGAGACAGC CATACAGCAGCTCTACGAGATTAAGGGTCGCGATGAACACAAGCCCGTGG CCATCTGCGTTCACAACATCGATGCGTTGCGACGCTTTGGTCAGGCTGCC CATCTCAGCGACGAGCTGCTAACTCGTTTGCTCCCGGGCCCCCTGACCAT CGTGATCGAGCGGACGTCCCAGCTGAGCAACCGTTTCCTTAATCCCAGCA CCTCCAAAATCGGCATACGCATTCCGGACTTCAACTTCATGCGCGACCTG TGCGCCGTGTGGCAGGAGAAGCCCCTGGCCCTGACCAGCGCCAATCGCTC CAGTGCGCCCAGCAGTCTGCAGGTGTCCGAGTTCCGTTCCCTATGGCCCC AATTGGGCGCCGTCTTCGATGCCGGTCGAATCGGTCTGACCGAGGAGCGA CGACTGGCCTCCACGGTCATTGACCTGGCCACTCCTGGCTACTATGAAAT AGTGCGCGCCGGCGTGGCTCTCAAGCCGACACTCAGCCTCATGGAGGAGT TCGGCATTCGGGAGCTAAAAATGATGTAGTATAAGAGCTATTCCTTTGGC TTTAACTTTAATTTTTACTTTGGAACATCCTACTTTGCTTTGCATGCGGG AACACAACAAATTGTTTATAAAATATACGGTTCAGTATGTACACCAAAAA AAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 16529173..16530220 | 198..1245 | 99 | <- | Minus |
chr2R | 16530296..16530492 | 1..197 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33786-RA | 1..747 | 383..1129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33786-RA | 1..747 | 383..1129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33786-RA | 1..747 | 383..1129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33786-RA | 1..747 | 383..1129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33786-RA | 1..747 | 383..1129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33785-RA | 1..1244 | 1..1245 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33786-RA | 1..1240 | 1..1240 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33785-RA | 6..1245 | 1..1240 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33785-RA | 1..1244 | 1..1245 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33786-RA | 6..1245 | 1..1240 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20642461..20643508 | 198..1245 | 99 | <- | Minus |
2R | 20643584..20643780 | 1..197 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20642461..20643508 | 198..1245 | 99 | <- | Minus |
2R | 20643584..20643780 | 1..197 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20642461..20643508 | 198..1245 | 99 | <- | Minus |
2R | 20643584..20643780 | 1..197 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 16529966..16531013 | 198..1245 | 99 | <- | Minus |
arm_2R | 16531089..16531285 | 1..197 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20643660..20644707 | 198..1245 | 99 | <- | Minus |
2R | 20644783..20644979 | 1..197 | 99 | Minus |
Translation from 382 to 1128
> RE55868.pep MRRLQTSLYRLLRAHHTSSRMQHQASELRTPVCAVGDEAALQLARQCLLG GQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAICVHNIDALR RFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSKIGIRIPDF NFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAGRI GLTEERRLASTVIDLATPGYYEIVRAGVALKPTLSLMEEFGIRELKMM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12752-PA | 342 | GF12752-PA | 112..342 | 18..248 | 1051 | 85.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20842-PA | 251 | GG20842-PA | 1..251 | 1..248 | 1194 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19895-PA | 250 | GH19895-PA | 1..240 | 1..241 | 930 | 74.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33786-PA | 248 | CG33786-PA | 1..248 | 1..248 | 1259 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19851-PA | 228 | GI19851-PA | 2..220 | 23..241 | 913 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17434-PA | 335 | GL17434-PA | 92..329 | 6..246 | 1030 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17233-PA | 335 | GA17233-PA | 92..329 | 6..246 | 1035 | 81.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19771-PA | 325 | GM19771-PA | 96..325 | 19..248 | 1152 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25261-PA | 248 | GD25261-PA | 1..248 | 1..248 | 1252 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18829-PA | 259 | GJ18829-PA | 1..250 | 1..241 | 961 | 75 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21591-PA | 222 | GK21591-PA | 5..220 | 31..246 | 927 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13782-PA | 251 | GE13782-PA | 1..251 | 1..248 | 1194 | 90.4 | Plus |
Translation from 382 to 1128
> RE55868.hyp MRRLQTSLYRLLRAHHTSSRMQHQASELRTPVCAVGDEAALQLARQCLLG GQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAICVHNIDALR RFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSKIGIRIPDF NFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAGRI GLTEERRLASTVIDLATPGYYEIVRAGVALKPTLSLMEEFGIRELKMM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33786-PA | 248 | CG33786-PA | 1..248 | 1..248 | 1259 | 100 | Plus |