Clone RE55868 Report

Search the DGRC for RE55868

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:558
Well:68
Vector:pFlc-1
Associated Gene/TranscriptCG33786-RA
Protein status:RE55868.pep: gold
Sequenced Size:1261

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33005 2001-12-14 Blastp of sequenced clone
CG10438 2002-01-01 Sim4 clustering to Release 2
CG33005 2003-01-01 Sim4 clustering to Release 3
CG33786 2008-04-29 Release 5.5 accounting
CG33786 2008-08-15 Release 5.9 accounting
CG33785 2008-08-15 Release 5.9 accounting
CG33785 2008-12-18 5.12 accounting
CG33786 2008-12-18 5.12 accounting

Clone Sequence Records

RE55868.complete Sequence

1261 bp (1261 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071501

> RE55868.complete
ATTTAACGTGCTCAAATCAAAAAACTAAACAGCGCGGATTCGGATTCTCC
GAAACTATGTTGTTTTTCTGCCCGTCGTGCGGAAATATATTGATTATCGA
GGAGGACACCAACTGCCATCGCTTCACGTGCAACACCTGCCCGTACATAT
CGAAGATCAGGCGCAAGATCTCCACGAAAACCTTTCCACGCCTCAAGGAG
GTGGATCACGTGCTGGGCGGCAAGGCGGCGTGGGAGAACGTAGACTCCAC
GGACGCAGAGTGTCCAACGTGCGGCCATAAGCGGGCGTACTTTATGCAAA
TCCAGACGCGGTCGGCGGATGAGCCCATGACCACGTTTTACAAGTGCTGC
AACCACGAGTGCAACCACACCTGGCGAGACTAATGCGCCGCCTTCAAACG
AGCCTTTATCGACTGCTCCGTGCTCACCACACATCCAGCAGAATGCAGCA
CCAAGCGAGCGAGCTGAGGACTCCAGTGTGCGCGGTGGGCGACGAGGCTG
CTCTCCAGTTGGCCCGCCAGTGCCTGCTTGGTGGCCAAGTGATTGCCCTG
CCCACCGATACCGTGTATGGCCTGGCCTGCGATGCCAACAACGAGACAGC
CATACAGCAGCTCTACGAGATTAAGGGTCGCGATGAACACAAGCCCGTGG
CCATCTGCGTTCACAACATCGATGCGTTGCGACGCTTTGGTCAGGCTGCC
CATCTCAGCGACGAGCTGCTAACTCGTTTGCTCCCGGGCCCCCTGACCAT
CGTGATCGAGCGGACGTCCCAGCTGAGCAACCGTTTCCTTAATCCCAGCA
CCTCCAAAATCGGCATACGCATTCCGGACTTCAACTTCATGCGCGACCTG
TGCGCCGTGTGGCAGGAGAAGCCCCTGGCCCTGACCAGCGCCAATCGCTC
CAGTGCGCCCAGCAGTCTGCAGGTGTCCGAGTTCCGTTCCCTATGGCCCC
AATTGGGCGCCGTCTTCGATGCCGGTCGAATCGGTCTGACCGAGGAGCGA
CGACTGGCCTCCACGGTCATTGACCTGGCCACTCCTGGCTACTATGAAAT
AGTGCGCGCCGGCGTGGCTCTCAAGCCGACACTCAGCCTCATGGAGGAGT
TCGGCATTCGGGAGCTAAAAATGATGTAGTATAAGAGCTATTCCTTTGGC
TTTAACTTTAATTTTTACTTTGGAACATCCTACTTTGCTTTGCATGCGGG
AACACAACAAATTGTTTATAAAATATACGGTTCAGTATGTACACCAAAAA
AAAAAAAAAAA

RE55868.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG33786-RA 1245 CG33786-RA 1..1244 1..1244 6205 99.9 Plus
CG33785-RA 1246 CG33785-RA 1..1244 1..1244 6205 99.9 Plus
CG11110-RA 761 CG11110-RA 688..761 1244..1171 370 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16529174..16530222 1244..196 5245 100 Minus
chr2R 21145070 chr2R 16530295..16530492 198..1 975 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:04:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20642462..20643510 1244..196 5245 100 Minus
2R 25286936 2R 20643583..20643780 198..1 975 99.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20643661..20644709 1244..196 5245 100 Minus
2R 25260384 2R 20644782..20644979 198..1 975 99.4 Minus
Blast to na_te.dros performed on 2019-03-16 12:36:22 has no hits.

RE55868.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:37:11 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16529173..16530220 198..1245 99 <- Minus
chr2R 16530296..16530492 1..197 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:24:33 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..747 383..1129 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:13:20 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..747 383..1129 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:35:01 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..747 383..1129 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:37:27 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..747 383..1129 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:34 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..747 383..1129 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:44:32 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
CG33785-RA 1..1244 1..1245 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:13:20 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..1240 1..1240 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:35:01 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
CG33785-RA 6..1245 1..1240 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:37:27 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
CG33785-RA 1..1244 1..1245 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:34 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 6..1245 1..1240 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:37:11 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20642461..20643508 198..1245 99 <- Minus
2R 20643584..20643780 1..197 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:37:11 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20642461..20643508 198..1245 99 <- Minus
2R 20643584..20643780 1..197 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:37:11 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20642461..20643508 198..1245 99 <- Minus
2R 20643584..20643780 1..197 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:35:01 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16529966..16531013 198..1245 99 <- Minus
arm_2R 16531089..16531285 1..197 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:15:07 Download gff for RE55868.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20643660..20644707 198..1245 99 <- Minus
2R 20644783..20644979 1..197 99   Minus

RE55868.pep Sequence

Translation from 382 to 1128

> RE55868.pep
MRRLQTSLYRLLRAHHTSSRMQHQASELRTPVCAVGDEAALQLARQCLLG
GQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAICVHNIDALR
RFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSKIGIRIPDF
NFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAGRI
GLTEERRLASTVIDLATPGYYEIVRAGVALKPTLSLMEEFGIRELKMM*

RE55868.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12752-PA 342 GF12752-PA 112..342 18..248 1051 85.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20842-PA 251 GG20842-PA 1..251 1..248 1194 90.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19895-PA 250 GH19895-PA 1..240 1..241 930 74.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33786-PA 248 CG33786-PA 1..248 1..248 1259 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19851-PA 228 GI19851-PA 2..220 23..241 913 77.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17434-PA 335 GL17434-PA 92..329 6..246 1030 81.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17233-PA 335 GA17233-PA 92..329 6..246 1035 81.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19771-PA 325 GM19771-PA 96..325 19..248 1152 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25261-PA 248 GD25261-PA 1..248 1..248 1252 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18829-PA 259 GJ18829-PA 1..250 1..241 961 75 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21591-PA 222 GK21591-PA 5..220 31..246 927 80.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13782-PA 251 GE13782-PA 1..251 1..248 1194 90.4 Plus

RE55868.hyp Sequence

Translation from 382 to 1128

> RE55868.hyp
MRRLQTSLYRLLRAHHTSSRMQHQASELRTPVCAVGDEAALQLARQCLLG
GQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAICVHNIDALR
RFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSKIGIRIPDF
NFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAGRI
GLTEERRLASTVIDLATPGYYEIVRAGVALKPTLSLMEEFGIRELKMM*

RE55868.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG33786-PA 248 CG33786-PA 1..248 1..248 1259 100 Plus