BDGP Sequence Production Resources |
Search the DGRC for RE55916
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 559 |
Well: | 16 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG7685-RA |
Protein status: | RE55916.pep: gold |
Preliminary Size: | 642 |
Sequenced Size: | 885 |
Gene | Date | Evidence |
---|---|---|
CG7685 | 2001-12-14 | Blastp of sequenced clone |
CG7685 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7685 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7685 | 2008-04-29 | Release 5.5 accounting |
CG7685 | 2008-08-15 | Release 5.9 accounting |
CG7685 | 2008-12-18 | 5.12 accounting |
885 bp (885 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071502
> RE55916.complete ATTACTTGGCCAGAGCGAAAAAACAAGGACAATATGCGTAAGACGTGGGT GAAGCGAGAGAATATATACTTCAAGCCCTTCTACAAGCAGAAGTCGAAGA TGTTCCTGCTGCTGATCTTCCTGGTCGGAATTTCGTTCATCGCGTATCAG GCCTTCTCGCTGAACCAGCTGCCCGGAGTGCCTGCTCCGTGGAATCTGCA GCAGATCAAGCGCAAGCACCAGCAGATGATGCAGTCCCTGGGCAGCAAAC AGCGCGACGTGGACGATTTCGATGGCGGAGGCGCCGATGCAGTTGCTCCG GCAGGCGGGGAAACCTCACCTGTTGCGGGTCACGAGGATCCCATCAAGAT TGTCAGGGGCACACGGCTCTTCGACTACGACGCCTACAAGCCCAACTTCG AGGGCAAGTTCCGGTGTCTGGACGGCTCCAAAGAGATCCCGTTCGACCAC CTGAACGACAACTACTGCGACTGTGAGGAGGACGGCAGCGACGAGCCCAG CACGAATGCCTGCGCCAAGGGGCGATTCTACTGTCGCTACCAGAAGCGTC ACATCACGGGCCGGGGCCTGGATATCTACGTGGCCAGCAGCCGCATTAAT GACCACGTGTGCGACTGCTGCGACGGCAGCGATGAGTGGAGCACGGCGAC CAAGTGTCCCAACGACTGTGCGTAGTCGCAGGCCGACGGGACCCCGTTCC CACTCCCATTCCTCTTCCATCTCCTCCACCTGTGCACCTAGGACACCAAT CTCAAGGATGAAGATGTCGGGCGGCGCATCACAAGCGATATTTTTTGTAC GAGTACAATAGAATTGTAATTTATTTTAAAATAAGTAGATTGAATAAAAG AAACGAATTCCAAGAAACACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7685-RA | 1021 | CG7685-RA | 115..986 | 1..872 | 4360 | 100 | Plus |
CG7685.c | 926 | CG7685.c | 67..926 | 11..870 | 4300 | 100 | Plus |
CG7685.b | 1003 | CG7685.b | 262..968 | 166..872 | 3535 | 100 | Plus |
CG7685.b | 1003 | CG7685.b | 115..264 | 1..150 | 750 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 14229685..14230200 | 355..870 | 2580 | 100 | Plus |
chr3R | 27901430 | chr3R | 14229416..14229624 | 149..357 | 1030 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 14229208..14229358 | 1..151 | 755 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 18405487..18406004 | 355..872 | 2590 | 100 | Plus |
3R | 32079331 | 3R | 18405218..18405426 | 149..357 | 1045 | 100 | Plus |
3R | 32079331 | 3R | 18405010..18405160 | 1..151 | 755 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 18146318..18146835 | 355..872 | 2590 | 100 | Plus |
3R | 31820162 | 3R | 18146049..18146257 | 149..357 | 1045 | 100 | Plus |
3R | 31820162 | 3R | 18145841..18145991 | 1..151 | 755 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 14229418..14229623 | 151..356 | 99 | -> | Plus |
chr3R | 14229208..14229357 | 1..150 | 100 | -> | Plus |
chr3R | 14229687..14230200 | 357..870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7685-RA | 1..642 | 34..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7685-RA | 1..642 | 34..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7685-RA | 1..642 | 34..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7685-RA | 1..642 | 34..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7685-RA | 1..642 | 34..675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7685-RA | 1..870 | 1..870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7685-RA | 1..870 | 1..870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7685-RA | 71..940 | 1..870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7685-RA | 1..870 | 1..870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7685-RA | 71..940 | 1..870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18405010..18405159 | 1..150 | 100 | -> | Plus |
3R | 18405220..18405425 | 151..356 | 100 | -> | Plus |
3R | 18405489..18406002 | 357..870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18405010..18405159 | 1..150 | 100 | -> | Plus |
3R | 18405220..18405425 | 151..356 | 100 | -> | Plus |
3R | 18405489..18406002 | 357..870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18405010..18405159 | 1..150 | 100 | -> | Plus |
3R | 18405220..18405425 | 151..356 | 100 | -> | Plus |
3R | 18405489..18406002 | 357..870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 14230732..14230881 | 1..150 | 100 | -> | Plus |
arm_3R | 14230942..14231147 | 151..356 | 100 | -> | Plus |
arm_3R | 14231211..14231724 | 357..870 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18146320..18146833 | 357..870 | 100 | Plus | |
3R | 18145841..18145990 | 1..150 | 100 | -> | Plus |
3R | 18146051..18146256 | 151..356 | 100 | -> | Plus |
Translation from 0 to 674
> RE55916.hyp ITWPERKNKDNMRKTWVKRENIYFKPFYKQKSKMFLLLIFLVGISFIAYQ AFSLNQLPGVPAPWNLQQIKRKHQQMMQSLGSKQRDVDDFDGGGADAVAP AGGETSPVAGHEDPIKIVRGTRLFDYDAYKPNFEGKFRCLDGSKEIPFDH LNDNYCDCEEDGSDEPSTNACAKGRFYCRYQKRHITGRGLDIYVASSRIN DHVCDCCDGSDEWSTATKCPNDCA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7685-PA | 213 | CG7685-PA | 1..213 | 12..224 | 1177 | 100 | Plus |
CG7685-PB | 207 | CG7685-PB | 1..207 | 12..224 | 1131 | 97.2 | Plus |
CG6453-PB | 548 | CG6453-PB | 34..130 | 120..223 | 250 | 48.6 | Plus |
CG6453-PA | 548 | CG6453-PA | 34..130 | 120..223 | 250 | 48.6 | Plus |
Translation from 33 to 674
> RE55916.pep MRKTWVKRENIYFKPFYKQKSKMFLLLIFLVGISFIAYQAFSLNQLPGVP APWNLQQIKRKHQQMMQSLGSKQRDVDDFDGGGADAVAPAGGETSPVAGH EDPIKIVRGTRLFDYDAYKPNFEGKFRCLDGSKEIPFDHLNDNYCDCEED GSDEPSTNACAKGRFYCRYQKRHITGRGLDIYVASSRINDHVCDCCDGSD EWSTATKCPNDCA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16904-PA | 213 | GF16904-PA | 1..213 | 1..213 | 948 | 82.8 | Plus |
Dana\GF15099-PA | 553 | GF15099-PA | 36..131 | 109..212 | 244 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22902-PA | 213 | GG22902-PA | 1..213 | 1..213 | 1143 | 98.6 | Plus |
Dere\GG21740-PA | 548 | GG21740-PA | 27..130 | 104..212 | 245 | 48.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18343-PA | 208 | GH18343-PA | 1..208 | 1..213 | 815 | 74.8 | Plus |
Dgri\GH10155-PA | 549 | GH10155-PA | 28..128 | 104..212 | 250 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7685-PA | 213 | CG7685-PA | 1..213 | 1..213 | 1177 | 100 | Plus |
CG7685-PB | 207 | CG7685-PB | 1..207 | 1..213 | 1131 | 97.2 | Plus |
GCS2beta-PB | 548 | CG6453-PB | 34..130 | 109..212 | 250 | 48.6 | Plus |
GCS2beta-PA | 548 | CG6453-PA | 34..130 | 109..212 | 250 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23324-PA | 207 | GI23324-PA | 1..207 | 1..213 | 800 | 73.7 | Plus |
Dmoj\GI22410-PA | 545 | GI22410-PA | 30..126 | 108..212 | 251 | 46.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24345-PA | 215 | GL24345-PA | 1..215 | 1..213 | 902 | 79.8 | Plus |
Dper\GL15951-PA | 551 | GL15951-PA | 33..131 | 108..213 | 242 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20519-PA | 215 | GA20519-PA | 1..215 | 1..213 | 902 | 79.8 | Plus |
Dpse\GA19606-PA | 551 | GA19606-PA | 33..131 | 108..213 | 242 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17869-PA | 191 | GM17869-PA | 1..191 | 23..213 | 1026 | 99.5 | Plus |
Dsec\GM17123-PA | 548 | GM17123-PA | 19..130 | 94..212 | 244 | 45 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19231-PA | 213 | GD19231-PA | 1..213 | 1..213 | 1146 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10327-PA | 205 | GJ10327-PA | 1..205 | 1..213 | 808 | 72.3 | Plus |
Dvir\GJ20305-PA | 531 | GJ20305-PA | 11..107 | 108..212 | 241 | 48.1 | Plus |