BDGP Sequence Production Resources |
Search the DGRC for RE55992
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 559 |
Well: | 92 |
Vector: | pFlc-1 |
Associated Gene/Transcript | SrpRbeta-RA |
Protein status: | RE55992.pep: gold |
Sequenced Size: | 1014 |
Gene | Date | Evidence |
---|---|---|
CG33162 | 2004-04-27 | Blastp of sequenced clone |
SrpRbeta | 2008-04-29 | Release 5.5 accounting |
SrpRbeta | 2008-08-15 | Release 5.9 accounting |
SrpRbeta | 2008-12-18 | 5.12 accounting |
1014 bp (1014 high quality bases) assembled on 2004-04-27
GenBank Submission: BT014643
> RE55992.complete GTTGCGCTGTGCTCACTCTAGATGAGTGCGTGTCATTTTCCCCATCCAAT TTGTTTGGTGTTTTGTTAGCCGAAATGGACAAACTAAATGAAAATGCTCG ACAGCGGAAGCAGATCAAGCTGGGAGAGATCGACACGGGCCCCATTATAG TGGCCCTCCTGCTAGGCTTCATTGCAGTGGCCATATTTGTGATCCTGCGA AGACGCTCTGCTGGTCGCAAGGACTTTCTGCTTACTGGGCTCAGTGAATC CGGCAAAAGTGCCATCTTCATGCAGCTGATCCACGGCAAATTCCCGGCCA CTTTTACTTCCATCAAGGAGAACGTGGGAGATTACCGGACGGGCAGCGCG TCTGCCAGGTTAGTGGATATACCCGGACATTATAGGGTGCGCGACAAGTG CTTGGAGCTATATAAACACCGTGCCAAGGGCATTGTCTTTGTGGTGGACT CGGTTACTGCCCACAAGGATATCCGGGATGTGGCAGACTTTCTGTACACC ATCCTATCAGACAGTGCCACACAACCCTGCTCTGTGCTAGTCCTTTGCAA CAAGCAGGATCAAACCACCGCCAAGAGTGCCCAGGTCATTAAAAGCTTAT TGGAGTCGGAACTGCACACAGTGCGCGACACCAGAAGCCGCAAACTTCAA TCCGTGGGCGACGAGGATGGCAGCAAATCCATCACATTGGGCAAGCCAGG CCGTGACTTCGAATTCTCACACATCGCACAGAATATCCAGTTTGCGGAAG CCTCCGCCAAGGACACTGAACTTGATCCCCTCACCGATTGGCTCGCTCGG TTGCTGTGAATTGGGCACACAAGGCTCTCAGACTGATAAAAAACTGGAGT CCTGAAGGAAAGAATGCGGAACAAAAAAACAACAGATTGATATTTATTTT AACGTTTAGCGCTCTGAATGTCGTATTTATTATGCTAAGCCGATATACAC CGCTGAGTATAAATCCGTGCATTGTTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SrpRbeta-RA | 1149 | SrpRbeta-RA | 23..1001 | 1..979 | 4895 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 8711129..8711617 | 976..488 | 2400 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 8711675..8711982 | 487..180 | 1540 | 100 | Minus |
chr3L | 24539361 | chr3L | 8712067..8712246 | 180..1 | 885 | 99.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8711129..8711617 | 488..976 | 99 | <- | Minus |
chr3L | 8711675..8711981 | 181..487 | 100 | <- | Minus |
chr3L | 8712067..8712246 | 1..180 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SrpRbeta-RA | 1..735 | 75..809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SrpRbeta-RA | 1..735 | 75..809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SrpRbeta-RA | 1..735 | 75..809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SrpRbeta-RA | 1..735 | 75..809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SrpRbeta-RA | 1..735 | 75..809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SrpRbeta-RA | 1..976 | 1..976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SrpRbeta-RA | 1..976 | 1..976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SrpRbeta-RA | 9..984 | 1..976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SrpRbeta-RA | 1..976 | 1..976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SrpRbeta-RA | 9..984 | 1..976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8719100..8719588 | 488..976 | 100 | <- | Minus |
3L | 8719646..8719952 | 181..487 | 100 | <- | Minus |
3L | 8720038..8720217 | 1..180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8719100..8719588 | 488..976 | 100 | <- | Minus |
3L | 8719646..8719952 | 181..487 | 100 | <- | Minus |
3L | 8720038..8720217 | 1..180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8719100..8719588 | 488..976 | 100 | <- | Minus |
3L | 8719646..8719952 | 181..487 | 100 | <- | Minus |
3L | 8720038..8720217 | 1..180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8712200..8712688 | 488..976 | 100 | <- | Minus |
arm_3L | 8712746..8713052 | 181..487 | 100 | <- | Minus |
arm_3L | 8713138..8713317 | 1..180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8713138..8713317 | 1..180 | 100 | Minus | |
3L | 8712200..8712688 | 488..976 | 100 | <- | Minus |
3L | 8712746..8713052 | 181..487 | 100 | <- | Minus |
Translation from 2 to 808
> RE55992.hyp CAVLTLDECVSFSPSNLFGVLLAEMDKLNENARQRKQIKLGEIDTGPIIV ALLLGFIAVAIFVILRRRSAGRKDFLLTGLSESGKSAIFMQLIHGKFPAT FTSIKENVGDYRTGSASARLVDIPGHYRVRDKCLELYKHRAKGIVFVVDS VTAHKDIRDVADFLYTILSDSATQPCSVLVLCNKQDQTTAKSAQVIKSLL ESELHTVRDTRSRKLQSVGDEDGSKSITLGKPGRDFEFSHIAQNIQFAEA SAKDTELDPLTDWLARLL*
Translation from 74 to 808
> RE55992.pep MDKLNENARQRKQIKLGEIDTGPIIVALLLGFIAVAIFVILRRRSAGRKD FLLTGLSESGKSAIFMQLIHGKFPATFTSIKENVGDYRTGSASARLVDIP GHYRVRDKCLELYKHRAKGIVFVVDSVTAHKDIRDVADFLYTILSDSATQ PCSVLVLCNKQDQTTAKSAQVIKSLLESELHTVRDTRSRKLQSVGDEDGS KSITLGKPGRDFEFSHIAQNIQFAEASAKDTELDPLTDWLARLL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10151-PA | 244 | GF10151-PA | 1..244 | 1..244 | 1157 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15064-PA | 243 | GG15064-PA | 1..243 | 1..244 | 1197 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16144-PA | 244 | GH16144-PA | 1..244 | 1..244 | 994 | 75.4 | Plus |
Dgri\GH22512-PA | 244 | GH22512-PA | 1..244 | 1..244 | 994 | 75.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SrpRbeta-PB | 244 | CG33162-PB | 1..244 | 1..244 | 1225 | 100 | Plus |
SrpRbeta-PA | 244 | CG33162-PA | 1..244 | 1..244 | 1225 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12413-PA | 244 | GI12413-PA | 1..244 | 1..244 | 1012 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10289-PA | 247 | GL10289-PA | 1..216 | 1..227 | 959 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17335-PA | 245 | GA17335-PA | 1..245 | 1..244 | 1098 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24921-PA | 244 | GM24921-PA | 1..244 | 1..244 | 1222 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12967-PA | 244 | GD12967-PA | 1..244 | 1..244 | 1243 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12305-PA | 244 | GJ12305-PA | 1..244 | 1..244 | 1037 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17473-PA | 244 | GK17473-PA | 1..244 | 1..244 | 1093 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\SrpRbeta-PA | 244 | GE21287-PA | 1..244 | 1..244 | 1239 | 96.3 | Plus |