Clone RE55992 Report

Search the DGRC for RE55992

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:559
Well:92
Vector:pFlc-1
Associated Gene/TranscriptSrpRbeta-RA
Protein status:RE55992.pep: gold
Sequenced Size:1014

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33162 2004-04-27 Blastp of sequenced clone
SrpRbeta 2008-04-29 Release 5.5 accounting
SrpRbeta 2008-08-15 Release 5.9 accounting
SrpRbeta 2008-12-18 5.12 accounting

Clone Sequence Records

RE55992.complete Sequence

1014 bp (1014 high quality bases) assembled on 2004-04-27

GenBank Submission: BT014643

> RE55992.complete
GTTGCGCTGTGCTCACTCTAGATGAGTGCGTGTCATTTTCCCCATCCAAT
TTGTTTGGTGTTTTGTTAGCCGAAATGGACAAACTAAATGAAAATGCTCG
ACAGCGGAAGCAGATCAAGCTGGGAGAGATCGACACGGGCCCCATTATAG
TGGCCCTCCTGCTAGGCTTCATTGCAGTGGCCATATTTGTGATCCTGCGA
AGACGCTCTGCTGGTCGCAAGGACTTTCTGCTTACTGGGCTCAGTGAATC
CGGCAAAAGTGCCATCTTCATGCAGCTGATCCACGGCAAATTCCCGGCCA
CTTTTACTTCCATCAAGGAGAACGTGGGAGATTACCGGACGGGCAGCGCG
TCTGCCAGGTTAGTGGATATACCCGGACATTATAGGGTGCGCGACAAGTG
CTTGGAGCTATATAAACACCGTGCCAAGGGCATTGTCTTTGTGGTGGACT
CGGTTACTGCCCACAAGGATATCCGGGATGTGGCAGACTTTCTGTACACC
ATCCTATCAGACAGTGCCACACAACCCTGCTCTGTGCTAGTCCTTTGCAA
CAAGCAGGATCAAACCACCGCCAAGAGTGCCCAGGTCATTAAAAGCTTAT
TGGAGTCGGAACTGCACACAGTGCGCGACACCAGAAGCCGCAAACTTCAA
TCCGTGGGCGACGAGGATGGCAGCAAATCCATCACATTGGGCAAGCCAGG
CCGTGACTTCGAATTCTCACACATCGCACAGAATATCCAGTTTGCGGAAG
CCTCCGCCAAGGACACTGAACTTGATCCCCTCACCGATTGGCTCGCTCGG
TTGCTGTGAATTGGGCACACAAGGCTCTCAGACTGATAAAAAACTGGAGT
CCTGAAGGAAAGAATGCGGAACAAAAAAACAACAGATTGATATTTATTTT
AACGTTTAGCGCTCTGAATGTCGTATTTATTATGCTAAGCCGATATACAC
CGCTGAGTATAAATCCGTGCATTGTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

RE55992.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
SrpRbeta-RA 1149 SrpRbeta-RA 23..1001 1..979 4895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8711129..8711617 976..488 2400 99.4 Minus
chr3L 24539361 chr3L 8711675..8711982 487..180 1540 100 Minus
chr3L 24539361 chr3L 8712067..8712246 180..1 885 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:04:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8719097..8719588 979..488 2460 100 Minus
3L 28110227 3L 8719646..8719953 487..180 1540 100 Minus
3L 28110227 3L 8720038..8720217 180..1 900 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8712197..8712688 979..488 2460 100 Minus
3L 28103327 3L 8712746..8713053 487..180 1540 100 Minus
3L 28103327 3L 8713138..8713317 180..1 900 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:24:22 has no hits.

RE55992.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:25:19 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8711129..8711617 488..976 99 <- Minus
chr3L 8711675..8711981 181..487 100 <- Minus
chr3L 8712067..8712246 1..180 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:24:40 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
SrpRbeta-RA 1..735 75..809 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:36:31 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
SrpRbeta-RA 1..735 75..809 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:12:16 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
SrpRbeta-RA 1..735 75..809 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:20:21 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
SrpRbeta-RA 1..735 75..809 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:59 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
SrpRbeta-RA 1..735 75..809 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:43:45 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
SrpRbeta-RA 1..976 1..976 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:36:31 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
SrpRbeta-RA 1..976 1..976 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:16 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
SrpRbeta-RA 9..984 1..976 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:20:21 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
SrpRbeta-RA 1..976 1..976 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:59 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
SrpRbeta-RA 9..984 1..976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:19 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8719100..8719588 488..976 100 <- Minus
3L 8719646..8719952 181..487 100 <- Minus
3L 8720038..8720217 1..180 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:19 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8719100..8719588 488..976 100 <- Minus
3L 8719646..8719952 181..487 100 <- Minus
3L 8720038..8720217 1..180 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:19 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8719100..8719588 488..976 100 <- Minus
3L 8719646..8719952 181..487 100 <- Minus
3L 8720038..8720217 1..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:16 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8712200..8712688 488..976 100 <- Minus
arm_3L 8712746..8713052 181..487 100 <- Minus
arm_3L 8713138..8713317 1..180 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:57:38 Download gff for RE55992.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8713138..8713317 1..180 100   Minus
3L 8712200..8712688 488..976 100 <- Minus
3L 8712746..8713052 181..487 100 <- Minus

RE55992.hyp Sequence

Translation from 2 to 808

> RE55992.hyp
CAVLTLDECVSFSPSNLFGVLLAEMDKLNENARQRKQIKLGEIDTGPIIV
ALLLGFIAVAIFVILRRRSAGRKDFLLTGLSESGKSAIFMQLIHGKFPAT
FTSIKENVGDYRTGSASARLVDIPGHYRVRDKCLELYKHRAKGIVFVVDS
VTAHKDIRDVADFLYTILSDSATQPCSVLVLCNKQDQTTAKSAQVIKSLL
ESELHTVRDTRSRKLQSVGDEDGSKSITLGKPGRDFEFSHIAQNIQFAEA
SAKDTELDPLTDWLARLL*

RE55992.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
SrpRbeta-PB 244 CG33162-PB 1..244 25..268 1225 100 Plus
SrpRbeta-PA 244 CG33162-PA 1..244 25..268 1225 100 Plus

RE55992.pep Sequence

Translation from 74 to 808

> RE55992.pep
MDKLNENARQRKQIKLGEIDTGPIIVALLLGFIAVAIFVILRRRSAGRKD
FLLTGLSESGKSAIFMQLIHGKFPATFTSIKENVGDYRTGSASARLVDIP
GHYRVRDKCLELYKHRAKGIVFVVDSVTAHKDIRDVADFLYTILSDSATQ
PCSVLVLCNKQDQTTAKSAQVIKSLLESELHTVRDTRSRKLQSVGDEDGS
KSITLGKPGRDFEFSHIAQNIQFAEASAKDTELDPLTDWLARLL*

RE55992.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10151-PA 244 GF10151-PA 1..244 1..244 1157 88.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15064-PA 243 GG15064-PA 1..243 1..244 1197 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16144-PA 244 GH16144-PA 1..244 1..244 994 75.4 Plus
Dgri\GH22512-PA 244 GH22512-PA 1..244 1..244 994 75.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
SrpRbeta-PB 244 CG33162-PB 1..244 1..244 1225 100 Plus
SrpRbeta-PA 244 CG33162-PA 1..244 1..244 1225 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12413-PA 244 GI12413-PA 1..244 1..244 1012 76.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10289-PA 247 GL10289-PA 1..216 1..227 959 80.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17335-PA 245 GA17335-PA 1..245 1..244 1098 83.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24921-PA 244 GM24921-PA 1..244 1..244 1222 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12967-PA 244 GD12967-PA 1..244 1..244 1243 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12305-PA 244 GJ12305-PA 1..244 1..244 1037 77.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17473-PA 244 GK17473-PA 1..244 1..244 1093 83.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\SrpRbeta-PA 244 GE21287-PA 1..244 1..244 1239 96.3 Plus