Clone RE56001 Report

Search the DGRC for RE56001

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:560
Well:1
Vector:pFlc-1
Associated Gene/TranscriptCG3530-RB
Protein status:RE56001.pep: gold
Preliminary Size:3169
Sequenced Size:2825

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3530 2004-12-16 Blastp of sequenced clone
CG3530 2008-04-29 Release 5.5 accounting
CG3530 2008-08-15 Release 5.9 accounting
CG3530 2008-12-18 5.12 accounting

Clone Sequence Records

RE56001.complete Sequence

2825 bp (2825 high quality bases) assembled on 2004-12-16

GenBank Submission: BT021258

> RE56001.complete
ATCGACTGGAGCACATCCCTAGTTCGTACAATCGCCTCGAAGAATTTATT
ATTATTCGGGAATAATTACAAAAAAAATGCAATAAAAAAGCAAACACGAG
TGCAGTTCTACCAAATTAACGAGGCTCCCTTGCGTGAGCTTGTGAACCGC
TGGGCGAATCAGTGCACAGTGACTTTGTGGCTCGTTTTCACGTGAGGCAA
CAGGAAAACCCAATCAAAACGTAAACAATGGACGAAATAAAGCTCGCCAA
GGTGGAAAATGTGCGGATGATAGATCGCTACAATACCAAAAATCCCACGG
TTGGCACACTCTATCTAACGGCCACCCATCTGATATTCGTGGAGCCCGAC
AGCAACAAGGAGACCTGGATCCTGCACATGCACGTGGCCAGCATTGAGAA
GCTTCCCTTGAGCACGACAGGATCTCCGCTACTCATCCGCTGCAAGACCT
TCCTCTCCGTAACTTTCGTCATTCCCAAGGACTCCGAATGCCACGATGTC
TACACTTCGCTGCTGAAACTCTTCCAGCCGGTGTCCATCAACAAATTGTA
CTGCTTCAACTACCAGCCGAACAAGGATGATTTCCCCAAGAACGCTGGCT
GGGATTACTTTAAACTGGAGGCGGAGTTCAAGCACATGCTGGTGCCCAAC
GAGGCCTGGACGCTGTGCTCCATGAACGAGAAGTACGAGCTGTGCGACAC
CTATCCGCGTCAGATTTACGTGCCCAAGGAGGCCACCACGCTGATGCTCA
TCAGCAGCTCGCGATTCCGCTCCAAGGGGCGGCTGCCAGTGCTCACCTAT
CTGCACAACAACAAGGCTTCCATCTGCCGCTGCAGTCAGCCCCTGTCCGG
ATTCAGTGCCCGCTGTCTGGAGGATGAGCAGATGCTGGAGGCCATACGCA
AGACGAATTCCAACACGGACTACATGTATGTGGTGGACACGCGACCGCGG
ATTAATGCCATGGCAAACAGAGCCGCCGGCAAGGGATACGAGAACGAGGC
CTTCTACGAGAACATCAAATTCCACTTCCTCGGCATTGAGAACATCCACG
TCCAGCGTGCCAGTCTGCAAAAGGTGCTTGAGGCCTGCGAACAGAAGTCG
CCCACGATGAGCGCCTTCATAAATGCCCTGGAGTCATCCGGCTGGCTGAA
GCACATTCGCTCCATATTGGACACGTCGAGCTTCATCGCCAACGCCGTGG
ACAAGGGCGTCTCGGTGGTGGTCCACTGCTCCGACGGCTGGGACCGCACG
GCCCAGGTCTGTTCACTGGCGCAGCTGATGCTGAACCCCTACTACCGAAC
CATCAAGGGCTTCCAGGCGCTAATCGAGAAGGACTGGCTGGCATTCGGGC
ACAAGTTCAGCGAGCGCTGCGGTCACATCCAGACGGATGCCCGCGAGGTG
TCGCCGATCTTCACACAGTTCCTGGACTGTACCTGGCAGCTAATGTCGCA
GCGCAGCGAGGCCTTCGAGTTCAACGAGCGGTTCCTGCTCATCCTGCACG
ACCATGTGCACTCATGTCAATTCGGCACCTTCGTGGGCAACTGCGAGAAG
GATCGCTTGGACCTAAAGCTGGCCGAGCGCACCTTCTCGCTGTGGGGCTA
TATGGCCAATCACCTGAACGAGTATATCAACCCGCTGTACAAACCAAATG
TAGACGAGGCCATTAAGGCCAACCTGGCACCGCAGTGCATCAAGTTCTGG
CGCGGCATGTACAGTCGCTTCGAGAGCGGCATTCATCCGCGGGAGCCACT
GGGCGACGTGCTGCTCGATAGCAAGGAGCACTGCAACTCGCTGGAGGACC
ACGTGCAGCATCTGACCAAGCGCATAGCCAGCTTCAAGAACTACATTTCC
AAGTCGGCCAAGAAACTGCAAGACGCCACCAGCGCCCCTGGCAAAGTGAA
CAAGGAGCTCTCCAGCAACGAGATCAATGACAACAAATACAACTACGATA
AGAAGCTTAGCGAACTGTCTGCCGCCGACGACGATCATCCGCTGAAGGCC
AGCAACATGTCCTTCGCCAGTCTGTCGCTGAGCGCGGAACAATCCAGTCC
GCCGCAGGCGCTGCCCGAGGAGATCAACTCCGTGGCCGTAGACTGGAAGC
CCATGCGCAACGTAACCACCTGCTCCTGCTCCACGCCCTTCGATCAGTTC
AGCAAAAAGACTCACTGCTGGCGCTGCGGGGACATCTTCTGCGAGCGCTG
CATAGACAAGAACGTGGCTCTGCCAGGACACGACAGTGGAAAGCCGGTGC
CGGTGTGCCGGGGCTGCTTCCGGCAAATGCAAAAGCAAAGCCCGTAGAGG
CAAGGCAGGCAGGATCGAGGAATGGAGCGGAGCTAGGGTGTGCAATCGAT
ATGGAAACGCTATTAAATTTATTGTGTGTATTTATTGTTGCATTTGTAGA
CTTAGCTGCTTGTAGAAGCTCATTCAAGTTGTTGCAAATGGAAATCAAAA
GAGCAAAACCAAATCAATCCACCAGCGATTGGCTTCCAGGCATCGTCCTA
GTCTATAAGCCGGGCACAAAACTGTATTTTGTTATTAGAATCTAGAGCTA
CATATTTGCTAATCCCAGCCCCACCCGCACGGAAAGTACAATTGCATGTC
AGAGCGCAGACTTGCTCTTGATCAAAATATTTATAATTTCCGAGGAACTC
GGCGGTCTGCCGGATGTACAGACACTTGGGCCTAGCCCTCCTTCGCAGCA
GCGGTCCCTGGCATCAAGCATATTCCACTAGCATACCCGTAAATTATGAA
CTACGCATCAATCTTGTTTGTCGATTTGATCAAAGTGTAATAAAACTTAT
TTATTCAACAAAAAAAAAAAAAAAA

RE56001.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3530-RB 2824 CG3530-RB 13..2823 1..2811 14040 99.9 Plus
CG3530-RC 3183 CG3530-RC 734..3177 368..2811 12205 99.9 Plus
CG3530.a 2762 CG3530.a 13..2349 1..2337 11670 99.9 Plus
CG3530.a 2762 CG3530.a 2349..2761 2399..2811 2065 100 Plus
CG3530-RC 3183 CG3530-RC 1..351 18..368 1755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19275320..19275971 2809..2158 3260 100 Minus
chr2R 21145070 chr2R 19276614..19277130 1695..1179 2570 99.8 Minus
chr2R 21145070 chr2R 19277700..19277985 816..531 1400 99.3 Minus
chr2R 21145070 chr2R 19276317..19276559 1936..1694 1200 99.6 Minus
chr2R 21145070 chr2R 19282732..19282983 253..1 1200 99.2 Minus
chr2R 21145070 chr2R 19277206..19277436 1180..950 1155 100 Minus
chr2R 21145070 chr2R 19276030..19276252 2159..1937 1100 99.6 Minus
chr2R 21145070 chr2R 19278052..19278215 531..368 805 99.4 Minus
chr2R 21145070 chr2R 19277503..19277639 950..814 655 98.5 Minus
chr2R 21145070 chr2R 19279676..19279794 368..250 595 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:04:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23389007..23389660 2811..2158 3270 100 Minus
2R 25286936 2R 23390303..23390819 1695..1179 2585 100 Minus
2R 25286936 2R 23391389..23391674 816..531 1430 100 Minus
2R 25286936 2R 23396427..23396679 253..1 1265 100 Minus
2R 25286936 2R 23390006..23390248 1936..1694 1215 100 Minus
2R 25286936 2R 23390895..23391125 1180..950 1155 100 Minus
2R 25286936 2R 23389719..23389941 2159..1937 1115 100 Minus
2R 25286936 2R 23391741..23391904 531..368 805 99.4 Minus
2R 25286936 2R 23391192..23391328 950..814 685 100 Minus
2R 25286936 2R 23393364..23393482 368..250 595 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23390206..23390859 2811..2158 3270 100 Minus
2R 25260384 2R 23391502..23392018 1695..1179 2585 100 Minus
2R 25260384 2R 23392588..23392873 816..531 1430 100 Minus
2R 25260384 2R 23397626..23397878 253..1 1265 100 Minus
2R 25260384 2R 23391205..23391447 1936..1694 1215 100 Minus
2R 25260384 2R 23392094..23392324 1180..950 1155 100 Minus
2R 25260384 2R 23390918..23391140 2159..1937 1115 100 Minus
2R 25260384 2R 23392940..23393103 531..368 805 99.3 Minus
2R 25260384 2R 23392391..23392527 950..814 685 100 Minus
2R 25260384 2R 23394563..23394681 368..250 595 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:41:53 has no hits.

RE56001.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:43:00 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19279676..19279792 252..368 100 <- Minus
chr2R 19282734..19282983 1..251 99   Minus
chr2R 19275320..19275969 2160..2809 100 <- Minus
chr2R 19276030..19276252 1937..2159 99 <- Minus
chr2R 19276317..19276559 1694..1936 99 <- Minus
chr2R 19276616..19277128 1181..1693 99 <- Minus
chr2R 19277206..19277435 951..1180 100 <- Minus
chr2R 19277503..19277637 816..950 98 <- Minus
chr2R 19277701..19277984 532..815 99 <- Minus
chr2R 19278052..19278214 369..531 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:24:41 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 1..2070 228..2297 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:21:50 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 1..2070 228..2297 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:48:02 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 1..2070 228..2297 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:05:50 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 1..2070 228..2297 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:11:56 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 1..2070 228..2297 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:22:56 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 1..2809 1..2809 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:21:50 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 1..2809 1..2809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:48:02 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 2..2810 1..2809 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:05:50 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 1..2809 1..2809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:11:56 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
CG3530-RB 2..2810 1..2809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:00 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23393364..23393480 252..368 100 <- Minus
2R 23396429..23396679 1..251 100   Minus
2R 23389009..23389658 2160..2809 100 <- Minus
2R 23389719..23389941 1937..2159 100 <- Minus
2R 23390006..23390248 1694..1936 100 <- Minus
2R 23390305..23390817 1181..1693 100 <- Minus
2R 23390895..23391124 951..1180 100 <- Minus
2R 23391192..23391326 816..950 100 <- Minus
2R 23391390..23391673 532..815 100 <- Minus
2R 23391741..23391903 369..531 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:00 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23393364..23393480 252..368 100 <- Minus
2R 23396429..23396679 1..251 100   Minus
2R 23389009..23389658 2160..2809 100 <- Minus
2R 23389719..23389941 1937..2159 100 <- Minus
2R 23390006..23390248 1694..1936 100 <- Minus
2R 23390305..23390817 1181..1693 100 <- Minus
2R 23390895..23391124 951..1180 100 <- Minus
2R 23391192..23391326 816..950 100 <- Minus
2R 23391390..23391673 532..815 100 <- Minus
2R 23391741..23391903 369..531 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:00 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23393364..23393480 252..368 100 <- Minus
2R 23396429..23396679 1..251 100   Minus
2R 23389009..23389658 2160..2809 100 <- Minus
2R 23389719..23389941 1937..2159 100 <- Minus
2R 23390006..23390248 1694..1936 100 <- Minus
2R 23390305..23390817 1181..1693 100 <- Minus
2R 23390895..23391124 951..1180 100 <- Minus
2R 23391192..23391326 816..950 100 <- Minus
2R 23391390..23391673 532..815 100 <- Minus
2R 23391741..23391903 369..531 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:48:02 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19280887..19281003 252..368 100 <- Minus
arm_2R 19283952..19284202 1..251 100   Minus
arm_2R 19278715..19278849 816..950 100 <- Minus
arm_2R 19276532..19277181 2160..2809 100 <- Minus
arm_2R 19277242..19277464 1937..2159 100 <- Minus
arm_2R 19277529..19277771 1694..1936 100 <- Minus
arm_2R 19277828..19278340 1181..1693 100 <- Minus
arm_2R 19278418..19278647 951..1180 100 <- Minus
arm_2R 19278913..19279196 532..815 100 <- Minus
arm_2R 19279264..19279426 369..531 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:10 Download gff for RE56001.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23390226..23390875 2160..2809 100 <- Minus
2R 23390936..23391158 1937..2159 100 <- Minus
2R 23391223..23391465 1694..1936 100 <- Minus
2R 23391522..23392034 1181..1693 100 <- Minus
2R 23392112..23392341 951..1180 100 <- Minus
2R 23392409..23392543 816..950 100 <- Minus
2R 23392607..23392890 532..815 100 <- Minus
2R 23392958..23393120 369..531 99 <- Minus
2R 23394581..23394697 252..368 100 <- Minus
2R 23397646..23397896 1..251 100   Minus

RE56001.pep Sequence

Translation from 227 to 2296

> RE56001.pep
MDEIKLAKVENVRMIDRYNTKNPTVGTLYLTATHLIFVEPDSNKETWILH
MHVASIEKLPLSTTGSPLLIRCKTFLSVTFVIPKDSECHDVYTSLLKLFQ
PVSINKLYCFNYQPNKDDFPKNAGWDYFKLEAEFKHMLVPNEAWTLCSMN
EKYELCDTYPRQIYVPKEATTLMLISSSRFRSKGRLPVLTYLHNNKASIC
RCSQPLSGFSARCLEDEQMLEAIRKTNSNTDYMYVVDTRPRINAMANRAA
GKGYENEAFYENIKFHFLGIENIHVQRASLQKVLEACEQKSPTMSAFINA
LESSGWLKHIRSILDTSSFIANAVDKGVSVVVHCSDGWDRTAQVCSLAQL
MLNPYYRTIKGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLD
CTWQLMSQRSEAFEFNERFLLILHDHVHSCQFGTFVGNCEKDRLDLKLAE
RTFSLWGYMANHLNEYINPLYKPNVDEAIKANLAPQCIKFWRGMYSRFES
GIHPREPLGDVLLDSKEHCNSLEDHVQHLTKRIASFKNYISKSAKKLQDA
TSAPGKVNKELSSNEINDNKYNYDKKLSELSAADDDHPLKASNMSFASLS
LSAEQSSPPQALPEEINSVAVDWKPMRNVTTCSCSTPFDQFSKKTHCWRC
GDIFCERCIDKNVALPGHDSGKPVPVCRGCFRQMQKQSP*

RE56001.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11853-PA 761 GF11853-PA 78..761 6..689 3603 96.3 Plus
Dana\GF14283-PA 619 GF14283-PA 185..570 124..502 900 44.9 Plus
Dana\GF19035-PA 1120 GF19035-PA 206..611 143..495 550 31.7 Plus
Dana\GF24368-PA 622 GF24368-PA 216..570 144..498 533 34.9 Plus
Dana\GF16615-PA 1966 GF16615-PA 1335..1549 241..449 334 36.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20035-PA 761 GG20035-PA 78..761 6..689 3693 99.1 Plus
Dere\GG10145-PA 619 GG10145-PA 69..570 21..502 893 39.2 Plus
Dere\GG14362-PA 622 GG14362-PA 216..570 144..498 526 34.2 Plus
Dere\GG17949-PA 1075 GG17949-PA 218..566 143..436 496 32.6 Plus
Dere\GG17190-PA 1974 GG17190-PA 1338..1552 241..449 342 37.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20661-PA 764 GH20661-PA 77..764 6..689 3479 93 Plus
Dgri\GH10708-PA 613 GH10708-PA 68..564 21..502 904 39.3 Plus
Dgri\GH12561-PA 1219 GH12561-PA 205..598 143..495 602 33.2 Plus
Dgri\GH16535-PA 622 GH16535-PA 216..570 144..498 508 33.7 Plus
Dgri\GH23138-PA 1972 GH23138-PA 1368..1553 272..449 341 38.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3530-PB 689 CG3530-PB 1..689 1..689 3691 100 Plus
CG3530-PA 761 CG3530-PA 78..761 6..689 3661 99.9 Plus
CG3530-PC 639 CG3530-PC 1..639 51..689 3428 100 Plus
mtm-PB 619 CG9115-PB 106..570 53..502 857 40.3 Plus
mtm-PA 619 CG9115-PA 106..570 53..502 857 40.3 Plus
CG3632-PJ 1119 CG3632-PJ 227..632 143..495 562 32 Plus
CG3632-PI 1241 CG3632-PI 227..632 143..495 562 32 Plus
CG3632-PH 1241 CG3632-PH 227..632 143..495 562 32 Plus
CG3632-PG 1241 CG3632-PG 227..632 143..495 562 32 Plus
CG3632-PF 1241 CG3632-PF 227..632 143..495 562 32 Plus
CG3632-PE 1250 CG3632-PE 236..641 143..495 562 32 Plus
CG5026-PC 620 CG5026-PC 214..568 144..498 522 34.5 Plus
CG5026-PB 620 CG5026-PB 214..568 144..498 522 34.5 Plus
CG5026-PA 620 CG5026-PA 214..568 144..498 522 34.5 Plus
Sbf-PB 1973 CG6939-PB 1338..1566 241..463 334 35.8 Plus
Sbf-PA 1993 CG6939-PA 1358..1586 241..463 334 35.8 Plus
CG14411-PD 843 CG14411-PD 317..623 158..472 297 26 Plus
CG14411-PC 843 CG14411-PC 317..623 158..472 297 26 Plus
CG14411-PB 843 CG14411-PB 317..623 158..472 297 26 Plus
CG14411-PA 843 CG14411-PA 317..623 158..472 297 26 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19024-PA 760 GI19024-PA 77..760 6..689 3515 94.9 Plus
Dmoj\GI11288-PA 624 GI11288-PA 176..575 113..502 904 44.2 Plus
Dmoj\GI13823-PA 614 GI13823-PA 208..562 144..498 510 34 Plus
Dmoj\GI11214-PA 766 GI11214-PA 2..264 233..495 501 37.2 Plus
Dmoj\GI10301-PA 1974 GI10301-PA 1368..1553 272..449 355 41.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17566-PA 760 GL17566-PA 78..760 6..689 3506 93.7 Plus
Dper\GL19086-PA 579 GL19086-PA 185..530 124..502 724 39.4 Plus
Dper\GL21339-PA 1215 GL21339-PA 362..634 216..495 507 36.7 Plus
Dper\GL15069-PA 570 GL15069-PA 211..518 144..498 408 30.6 Plus
Dper\GL12246-PA 1978 GL12246-PA 1372..1557 272..449 347 41.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17504-PA 762 GA17504-PA 78..762 6..689 3518 93.9 Plus
Dpse\GA17504-PB 677 GA17504-PB 1..677 14..689 3492 94.1 Plus
Dpse\GA21553-PA 619 GA21553-PA 185..570 124..502 887 44.5 Plus
Dpse\GA18604-PA 617 GA18604-PA 211..565 144..498 537 34.5 Plus
Dpse\GA22870-PB 1178 GA22870-PB 362..634 216..495 506 36.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15548-PA 689 GM15548-PA 1..689 1..689 3726 99.3 Plus
Dsec\GM13033-PA 165 GM13033-PA 1..165 48..212 885 98.8 Plus
Dsec\GM17970-PA 416 GM17970-PA 2..367 144..502 846 45.3 Plus
Dsec\GM25107-PA 616 GM25107-PA 210..564 144..498 532 34.8 Plus
Dsec\GM13419-PA 1010 GM13419-PA 236..643 143..489 502 31.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25052-PA 761 GD25052-PA 78..761 6..689 3689 99 Plus
Dsim\GD22607-PA 556 GD22607-PA 122..507 124..502 888 44.8 Plus
Dsim\GD14143-PA 620 GD14143-PA 214..568 144..498 541 34.8 Plus
Dsim\GD17273-PA 1012 GD17273-PA 236..643 143..480 501 31.5 Plus
Dsim\GD20634-PA 1973 GD20634-PA 1338..1552 241..449 339 36.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19990-PA 760 GJ19990-PA 77..760 6..689 3489 94.3 Plus
Dvir\GJ12474-PA 623 GJ12474-PA 189..574 124..502 894 45 Plus
Dvir\GJ18508-PA 1150 GJ18508-PA 186..599 128..495 594 32.1 Plus
Dvir\GJ11690-PA 611 GJ11690-PA 5..559 2..498 544 28.9 Plus
Dvir\GJ10154-PA 1979 GJ10154-PA 1344..1558 241..449 360 37.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23060-PA 762 GK23060-PA 78..762 6..689 3540 94.3 Plus
Dwil\GK15399-PA 620 GK15399-PA 186..571 124..502 895 45 Plus
Dwil\GK12345-PA 623 GK12345-PA 209..570 137..498 548 34.9 Plus
Dwil\GK25720-PA 1287 GK25720-PA 359..631 216..495 508 36.7 Plus
Dwil\GK14310-PA 2000 GK14310-PA 1324..1560 221..445 338 35 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11572-PA 689 GE11572-PA 1..689 1..689 3729 99.3 Plus
Dyak\GE18955-PA 619 GE18955-PA 69..570 21..502 895 39.2 Plus
Dyak\GE11013-PA 857 GE11013-PA 234..826 143..681 566 29.1 Plus
Dyak\GE20794-PA 621 GE20794-PA 215..569 144..498 527 34.2 Plus
Dyak\GE10084-PA 1973 GE10084-PA 1338..1552 241..449 341 37.2 Plus

RE56001.hyp Sequence

Translation from 227 to 2296

> RE56001.hyp
MDEIKLAKVENVRMIDRYNTKNPTVGTLYLTATHLIFVEPDSNKETWILH
MHVASIEKLPLSTTGSPLLIRCKTFLSVTFVIPKDSECHDVYTSLLKLFQ
PVSINKLYCFNYQPNKDDFPKNAGWDYFKLEAEFKHMLVPNEAWTLCSMN
EKYELCDTYPRQIYVPKEATTLMLISSSRFRSKGRLPVLTYLHNNKASIC
RCSQPLSGFSARCLEDEQMLEAIRKTNSNTDYMYVVDTRPRINAMANRAA
GKGYENEAFYENIKFHFLGIENIHVQRASLQKVLEACEQKSPTMSAFINA
LESSGWLKHIRSILDTSSFIANAVDKGVSVVVHCSDGWDRTAQVCSLAQL
MLNPYYRTIKGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLD
CTWQLMSQRSEAFEFNERFLLILHDHVHSCQFGTFVGNCEKDRLDLKLAE
RTFSLWGYMANHLNEYINPLYKPNVDEAIKANLAPQCIKFWRGMYSRFES
GIHPREPLGDVLLDSKEHCNSLEDHVQHLTKRIASFKNYISKSAKKLQDA
TSAPGKVNKELSSNEINDNKYNYDKKLSELSAADDDHPLKASNMSFASLS
LSAEQSSPPQALPEEINSVAVDWKPMRNVTTCSCSTPFDQFSKKTHCWRC
GDIFCERCIDKNVALPGHDSGKPVPVCRGCFRQMQKQSP*

RE56001.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3530-PB 689 CG3530-PB 1..689 1..689 3691 100 Plus
CG3530-PA 761 CG3530-PA 78..761 6..689 3661 99.9 Plus
CG3530-PC 639 CG3530-PC 1..639 51..689 3428 100 Plus
mtm-PB 619 CG9115-PB 106..570 53..502 857 40.3 Plus
mtm-PA 619 CG9115-PA 106..570 53..502 857 40.3 Plus