Clone RE56208 Report

Search the DGRC for RE56208

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:562
Well:8
Vector:pFlc-1
Associated Gene/TranscriptCG31038-RC
Protein status:RE56208.pep: gold
Preliminary Size:1296
Sequenced Size:2053

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7854 2002-01-01 Sim4 clustering to Release 2
CG31038 2002-04-22 Blastp of sequenced clone
CG31038 2008-04-29 Release 5.5 accounting
CG31038 2008-08-15 Release 5.9 accounting
CG31038 2008-12-18 5.12 accounting

Clone Sequence Records

RE56208.complete Sequence

2053 bp (2053 high quality bases) assembled on 2006-06-05

GenBank Submission: AY113500

> RE56208.complete
AGTTGCACGCGAATTTCGCAGCGAAACAAACAATATATTCACGCCAAACG
GAACGAGGAAACACAGATTATATGTTCATTTTTCCCATACTGTTTGTTCA
AATCGTGATTTCTAATGTCATAAGGAGTCTCAAGCGCCGTCTCGCAAAGC
CGCTGAAAATGTCCGAGGACCTGGACGAGCTCTTCCTGACGCCCATTCCG
GCGCCCTCGGCCGTGGAGCTGCAGCAGTGCATACTGTTCGGCTTCCGGCG
CCGCCTTCATCCCGCCCAGATATTCGAGGAGTGCCGCAACGCCTTTGGGC
CCTTCTGCCCCAGTGCGCAGTACGTGGCGAAGTGGTACCAGCGGTTCCAG
GACGGCTTCTTCAATCTGGACGAGAAGGACGACGAGGAGCTGAGGATCGG
GCATGGCGGCACGCCCACCACCTGCAGTGATTACGATGATGACAGTGATT
GCGGGGAGGCGACCGTTCTGCCCCTGATCCTAAGTGAAATGATCCAACGC
AGTGAGGAGGATGACGATGATGATGGTACTGATGGTTTTGAGAAGGAGAG
TGATGATGGTCTAGATGGTCATGTGATTGGTTATTGGCAGGGTTATGGCT
ATTTGGGTGGCAAGCAAAGGTATAGTTGGGCTGGAACTAAACTTGGAAAC
TCGGCTTGCGAGCTGCCCCCGCTGCCGAAATCTCTCATCGGCTTCAACAA
GTTACTGTGCTCCGATTCGGGACTCCTGAGTGATGTGGAAGGAAACAATA
ACAGCAGCGATGGCAGCCGAAAACCAAACGACAATCTTGCTGTGGAGACA
CAGGATACCAAGGAGCATGCCACCGATAAGTCACTGCCCTCCTCGCCGAA
CGGAAACACATCCATACCACCAATGCTGGTGGCCAAATCCGAGGCCAAGT
CCCCCAGCTTATCCGCCAAAGGAAACCCCCAGGCGGTCGAGGCGGGCAGC
ACTCTGGATGCCCAGATTGCGACGCTGCGGAAGGAAATGAACGGACTGCG
TCAACTAGATCTCTCGTTGCTGTCACAACTGTGGGTGCTTAACGAATCGA
TCCAAGAGTTCCGCGCCCTGATCGAAGATCAGGAGAACGAGGATGAGGAC
GACGAGGTGGAGGTGGAGGTGGGAAACGAGCTGGACGAGGAGGGCAACAG
CCGGGTGTCCTCGTCCATCGAGTCGGTGCGATTGGAGGGCGGTGCTGATG
GCACGTCGAAGCATCTGGGAACCATACCAAAGGTCATAACGACGCAGCCA
AAGGTGCTGAGGGACTCACTGGCCACGGCCAGCAAGGACCAGAAGCCGGT
GCCCAGGATGCGGAGTGCCCCGCCACCGCCACCTCCCGCCGTGCTGCAAT
CCTTGTCCCTGGAGCGAAAACCGCCGGCTCCGTCACGACCCACATGATGT
TACCTCTCGGACTTCCTCGCCGGAGTCAGGATGGTCATGTGCAAGGCGAT
CGTGAGCGATGTGCCCGCCTCATCCGCGTCCGCGTCCCTTGGAGGCGATG
GAGCCCCGCTTGGCCGGGACGCGCAGAGCTGTTTGGGCAACCAGACTGGC
CAGGTCCTCCAAGCATAGTTTTAGTTGATATATCCGATAAACAAGGTGTA
CGAGCGATTACGAGCGAACTGATCCAAATTCTGGGTGCACTGGCAGCAGT
TCTCGAAGTGCCCCCACAAAGAATCCCGTTGCGAAGCCTAGATTATCCGC
TGCTTACCTCAATATAGGAAGACCCAACATAATATGTATAATTGGTAGAA
TTCGTGAGACCAGCCTCTGTGGTTAGGAGTCCTTTGTGATCTTCAGTTGT
AAGTTTATTGTACATTTTTCTCTTGTGGTTTGGGCTGATGGGTTTCACCG
ATAACACTTGTTTTTGTTTAATAGCCTTACTCGTTAAGCTTAGCTATCGA
ATGCAGTGTATCCTGGATCGATCTGCGGATCCTGTGCATTTGACCAGTAA
CATTTGTATATAGCGATTTTCCCGGCTAGCTGCTGAACATTTTATAAACC
TAACGAAGAGCATACAGAATAAAAAACTTGAAAGAAGAAAAAAAAAAAAA
AAA

RE56208.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31038-RC 2137 CG31038-RC 99..2135 1..2037 10170 99.9 Plus
CG31038.a 2022 CG31038.a 95..2020 112..2037 9615 99.9 Plus
CG31038-RA 3517 CG31038-RA 2098..3491 644..2037 6955 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25724616..25725650 989..2037 4880 97.9 Plus
chr3R 27901430 chr3R 25719156..25719687 112..643 2600 99.2 Plus
chr3R 27901430 chr3R 25719758..25720103 644..989 1715 99.7 Plus
chr3R 27901430 chr3R 25717438..25717548 1..111 555 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:04:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29902183..29903231 989..2037 5230 99.9 Plus
3R 32079331 3R 29896698..29897229 112..643 2660 100 Plus
3R 32079331 3R 29897300..29897645 644..989 1730 100 Plus
3R 32079331 3R 29894983..29895093 1..111 555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29643014..29644062 989..2037 5230 99.9 Plus
3R 31820162 3R 29637529..29638060 112..643 2660 100 Plus
3R 31820162 3R 29638131..29638476 644..989 1730 100 Plus
3R 31820162 3R 29635814..29635924 1..111 555 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:31:13 has no hits.

RE56208.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:32:14 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25717438..25717548 1..111 100 -> Plus
chr3R 25719156..25719540 112..496 99 == Plus
chr3R 25719622..25719687 578..643 100 -> Plus
chr3R 25719758..25720103 644..989 99 -> Plus
chr3R 25724617..25724707 990..1080 100 == Plus
chr3R 25724771..25725650 1144..2037 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:24:51 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 1..1326 72..1397 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:23:29 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 1..1326 72..1397 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:32 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 1..1326 72..1397 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:42:13 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 1..1326 72..1397 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:31:32 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 1..1326 72..1397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:51:45 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 1..2037 1..2037 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:23:29 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 1..2037 1..2037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:32 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 3..2039 1..2037 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:42:14 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 1..2037 1..2037 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:31:32 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
CG31038-RC 3..2039 1..2037 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:14 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29894983..29895093 1..111 100 -> Plus
3R 29896698..29897229 112..643 100 -> Plus
3R 29897300..29897645 644..989 100 -> Plus
3R 29902184..29903231 990..2037 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:14 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29894983..29895093 1..111 100 -> Plus
3R 29896698..29897229 112..643 100 -> Plus
3R 29897300..29897645 644..989 100 -> Plus
3R 29902184..29903231 990..2037 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:14 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29894983..29895093 1..111 100 -> Plus
3R 29896698..29897229 112..643 100 -> Plus
3R 29897300..29897645 644..989 100 -> Plus
3R 29902184..29903231 990..2037 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:32 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25720705..25720815 1..111 100 -> Plus
arm_3R 25723022..25723367 644..989 100 -> Plus
arm_3R 25722420..25722951 112..643 100 -> Plus
arm_3R 25727906..25728953 990..2037 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:51:24 Download gff for RE56208.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29635814..29635924 1..111 100 -> Plus
3R 29637529..29638060 112..643 100 -> Plus
3R 29638131..29638476 644..989 100 -> Plus
3R 29643015..29644062 990..2037 99   Plus

RE56208.hyp Sequence

Translation from 2 to 1396

> RE56208.hyp
LHANFAAKQTIYSRQTERGNTDYMFIFPILFVQIVISNVIRSLKRRLAKP
LKMSEDLDELFLTPIPAPSAVELQQCILFGFRRRLHPAQIFEECRNAFGP
FCPSAQYVAKWYQRFQDGFFNLDEKDDEELRIGHGGTPTTCSDYDDDSDC
GEATVLPLILSEMIQRSEEDDDDDGTDGFEKESDDGLDGHVIGYWQGYGY
LGGKQRYSWAGTKLGNSACELPPLPKSLIGFNKLLCSDSGLLSDVEGNNN
SSDGSRKPNDNLAVETQDTKEHATDKSLPSSPNGNTSIPPMLVAKSEAKS
PSLSAKGNPQAVEAGSTLDAQIATLRKEMNGLRQLDLSLLSQLWVLNESI
QEFRALIEDQENEDEDDEVEVEVGNELDEEGNSRVSSSIESVRLEGGADG
TSKHLGTIPKVITTQPKVLRDSLATASKDQKPVPRMRSAPPPPPPAVLQS
LSLERKPPAPSRPT*

RE56208.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31038-PC 441 CG31038-PC 1..441 24..464 2298 100 Plus
CG31038-PH 433 CG31038-PH 1..433 24..464 2227 98 Plus
CG31038-PG 412 CG31038-PG 1..412 53..464 2160 100 Plus
CG31038-PE 730 CG31038-PE 479..730 213..464 1269 99.6 Plus
CG31038-PA 730 CG31038-PA 479..730 213..464 1269 99.6 Plus

RE56208.pep Sequence

Translation from 71 to 1396

> RE56208.pep
MFIFPILFVQIVISNVIRSLKRRLAKPLKMSEDLDELFLTPIPAPSAVEL
QQCILFGFRRRLHPAQIFEECRNAFGPFCPSAQYVAKWYQRFQDGFFNLD
EKDDEELRIGHGGTPTTCSDYDDDSDCGEATVLPLILSEMIQRSEEDDDD
DGTDGFEKESDDGLDGHVIGYWQGYGYLGGKQRYSWAGTKLGNSACELPP
LPKSLIGFNKLLCSDSGLLSDVEGNNNSSDGSRKPNDNLAVETQDTKEHA
TDKSLPSSPNGNTSIPPMLVAKSEAKSPSLSAKGNPQAVEAGSTLDAQIA
TLRKEMNGLRQLDLSLLSQLWVLNESIQEFRALIEDQENEDEDDEVEVEV
GNELDEEGNSRVSSSIESVRLEGGADGTSKHLGTIPKVITTQPKVLRDSL
ATASKDQKPVPRMRSAPPPPPPAVLQSLSLERKPPAPSRPT*

RE56208.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18801-PA 718 GF18801-PA 480..718 189..441 596 64.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11705-PA 729 GG11705-PA 481..729 190..441 933 88.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16740-PA 457 GH16740-PA 1..457 1..441 767 51.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31038-PC 441 CG31038-PC 1..441 1..441 2298 100 Plus
CG31038-PH 433 CG31038-PH 1..433 1..441 2227 98 Plus
CG31038-PG 412 CG31038-PG 1..412 30..441 2160 100 Plus
CG31038-PE 730 CG31038-PE 479..730 190..441 1269 99.6 Plus
CG31038-PA 730 CG31038-PA 479..730 190..441 1269 99.6 Plus
CG31038-PD 605 CG31038-PD 479..595 190..306 588 99.1 Plus
CG31038-PB 605 CG31038-PB 479..595 190..306 588 99.1 Plus
lmgB-PD 365 CG34441-PD 16..320 198..422 195 27.6 Plus
lmgB-PC 365 CG34441-PC 16..320 198..422 195 27.6 Plus
lmgB-PB 365 CG34441-PB 16..320 198..422 195 27.6 Plus
lmgB-PA 365 CG34441-PA 16..320 198..422 195 27.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22306-PA 520 GI22306-PA 1..229 1..223 657 57.5 Plus
Dmoj\GI22306-PA 520 GI22306-PA 365..520 291..441 269 60.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14036-PA 804 GL14036-PA 523..804 190..441 356 51.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15957-PD 481 GA15957-PD 1..481 1..441 916 54.2 Plus
Dpse\GA15957-PC 830 GA15957-PC 555..830 190..441 330 51.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12835-PA 730 GM12835-PA 481..730 190..441 1218 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21479-PA 136 GD21479-PA 4..136 307..441 654 97.8 Plus
Dsim\GD21478-PA 580 GD21478-PA 481..577 190..286 437 88.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10492-PA 514 GJ10492-PA 1..235 1..223 629 56.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13363-PA 824 GK13363-PA 659..797 291..415 241 56.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23896-PA 724 GE23896-PA 480..724 190..441 903 86.6 Plus