BDGP Sequence Production Resources |
Search the DGRC for RE56208
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 562 |
Well: | 8 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31038-RC |
Protein status: | RE56208.pep: gold |
Preliminary Size: | 1296 |
Sequenced Size: | 2053 |
Gene | Date | Evidence |
---|---|---|
CG7854 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31038 | 2002-04-22 | Blastp of sequenced clone |
CG31038 | 2008-04-29 | Release 5.5 accounting |
CG31038 | 2008-08-15 | Release 5.9 accounting |
CG31038 | 2008-12-18 | 5.12 accounting |
2053 bp (2053 high quality bases) assembled on 2006-06-05
GenBank Submission: AY113500
> RE56208.complete AGTTGCACGCGAATTTCGCAGCGAAACAAACAATATATTCACGCCAAACG GAACGAGGAAACACAGATTATATGTTCATTTTTCCCATACTGTTTGTTCA AATCGTGATTTCTAATGTCATAAGGAGTCTCAAGCGCCGTCTCGCAAAGC CGCTGAAAATGTCCGAGGACCTGGACGAGCTCTTCCTGACGCCCATTCCG GCGCCCTCGGCCGTGGAGCTGCAGCAGTGCATACTGTTCGGCTTCCGGCG CCGCCTTCATCCCGCCCAGATATTCGAGGAGTGCCGCAACGCCTTTGGGC CCTTCTGCCCCAGTGCGCAGTACGTGGCGAAGTGGTACCAGCGGTTCCAG GACGGCTTCTTCAATCTGGACGAGAAGGACGACGAGGAGCTGAGGATCGG GCATGGCGGCACGCCCACCACCTGCAGTGATTACGATGATGACAGTGATT GCGGGGAGGCGACCGTTCTGCCCCTGATCCTAAGTGAAATGATCCAACGC AGTGAGGAGGATGACGATGATGATGGTACTGATGGTTTTGAGAAGGAGAG TGATGATGGTCTAGATGGTCATGTGATTGGTTATTGGCAGGGTTATGGCT ATTTGGGTGGCAAGCAAAGGTATAGTTGGGCTGGAACTAAACTTGGAAAC TCGGCTTGCGAGCTGCCCCCGCTGCCGAAATCTCTCATCGGCTTCAACAA GTTACTGTGCTCCGATTCGGGACTCCTGAGTGATGTGGAAGGAAACAATA ACAGCAGCGATGGCAGCCGAAAACCAAACGACAATCTTGCTGTGGAGACA CAGGATACCAAGGAGCATGCCACCGATAAGTCACTGCCCTCCTCGCCGAA CGGAAACACATCCATACCACCAATGCTGGTGGCCAAATCCGAGGCCAAGT CCCCCAGCTTATCCGCCAAAGGAAACCCCCAGGCGGTCGAGGCGGGCAGC ACTCTGGATGCCCAGATTGCGACGCTGCGGAAGGAAATGAACGGACTGCG TCAACTAGATCTCTCGTTGCTGTCACAACTGTGGGTGCTTAACGAATCGA TCCAAGAGTTCCGCGCCCTGATCGAAGATCAGGAGAACGAGGATGAGGAC GACGAGGTGGAGGTGGAGGTGGGAAACGAGCTGGACGAGGAGGGCAACAG CCGGGTGTCCTCGTCCATCGAGTCGGTGCGATTGGAGGGCGGTGCTGATG GCACGTCGAAGCATCTGGGAACCATACCAAAGGTCATAACGACGCAGCCA AAGGTGCTGAGGGACTCACTGGCCACGGCCAGCAAGGACCAGAAGCCGGT GCCCAGGATGCGGAGTGCCCCGCCACCGCCACCTCCCGCCGTGCTGCAAT CCTTGTCCCTGGAGCGAAAACCGCCGGCTCCGTCACGACCCACATGATGT TACCTCTCGGACTTCCTCGCCGGAGTCAGGATGGTCATGTGCAAGGCGAT CGTGAGCGATGTGCCCGCCTCATCCGCGTCCGCGTCCCTTGGAGGCGATG GAGCCCCGCTTGGCCGGGACGCGCAGAGCTGTTTGGGCAACCAGACTGGC CAGGTCCTCCAAGCATAGTTTTAGTTGATATATCCGATAAACAAGGTGTA CGAGCGATTACGAGCGAACTGATCCAAATTCTGGGTGCACTGGCAGCAGT TCTCGAAGTGCCCCCACAAAGAATCCCGTTGCGAAGCCTAGATTATCCGC TGCTTACCTCAATATAGGAAGACCCAACATAATATGTATAATTGGTAGAA TTCGTGAGACCAGCCTCTGTGGTTAGGAGTCCTTTGTGATCTTCAGTTGT AAGTTTATTGTACATTTTTCTCTTGTGGTTTGGGCTGATGGGTTTCACCG ATAACACTTGTTTTTGTTTAATAGCCTTACTCGTTAAGCTTAGCTATCGA ATGCAGTGTATCCTGGATCGATCTGCGGATCCTGTGCATTTGACCAGTAA CATTTGTATATAGCGATTTTCCCGGCTAGCTGCTGAACATTTTATAAACC TAACGAAGAGCATACAGAATAAAAAACTTGAAAGAAGAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31038-RC | 2137 | CG31038-RC | 99..2135 | 1..2037 | 10170 | 99.9 | Plus |
CG31038.a | 2022 | CG31038.a | 95..2020 | 112..2037 | 9615 | 99.9 | Plus |
CG31038-RA | 3517 | CG31038-RA | 2098..3491 | 644..2037 | 6955 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25724616..25725650 | 989..2037 | 4880 | 97.9 | Plus |
chr3R | 27901430 | chr3R | 25719156..25719687 | 112..643 | 2600 | 99.2 | Plus |
chr3R | 27901430 | chr3R | 25719758..25720103 | 644..989 | 1715 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 25717438..25717548 | 1..111 | 555 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 29902183..29903231 | 989..2037 | 5230 | 99.9 | Plus |
3R | 32079331 | 3R | 29896698..29897229 | 112..643 | 2660 | 100 | Plus |
3R | 32079331 | 3R | 29897300..29897645 | 644..989 | 1730 | 100 | Plus |
3R | 32079331 | 3R | 29894983..29895093 | 1..111 | 555 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 29643014..29644062 | 989..2037 | 5230 | 99.9 | Plus |
3R | 31820162 | 3R | 29637529..29638060 | 112..643 | 2660 | 100 | Plus |
3R | 31820162 | 3R | 29638131..29638476 | 644..989 | 1730 | 100 | Plus |
3R | 31820162 | 3R | 29635814..29635924 | 1..111 | 555 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25717438..25717548 | 1..111 | 100 | -> | Plus |
chr3R | 25719156..25719540 | 112..496 | 99 | == | Plus |
chr3R | 25719622..25719687 | 578..643 | 100 | -> | Plus |
chr3R | 25719758..25720103 | 644..989 | 99 | -> | Plus |
chr3R | 25724617..25724707 | 990..1080 | 100 | == | Plus |
chr3R | 25724771..25725650 | 1144..2037 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31038-RC | 1..1326 | 72..1397 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31038-RC | 1..1326 | 72..1397 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31038-RC | 1..1326 | 72..1397 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31038-RC | 1..1326 | 72..1397 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31038-RC | 1..1326 | 72..1397 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31038-RC | 1..2037 | 1..2037 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31038-RC | 1..2037 | 1..2037 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31038-RC | 3..2039 | 1..2037 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31038-RC | 1..2037 | 1..2037 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31038-RC | 3..2039 | 1..2037 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29894983..29895093 | 1..111 | 100 | -> | Plus |
3R | 29896698..29897229 | 112..643 | 100 | -> | Plus |
3R | 29897300..29897645 | 644..989 | 100 | -> | Plus |
3R | 29902184..29903231 | 990..2037 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29894983..29895093 | 1..111 | 100 | -> | Plus |
3R | 29896698..29897229 | 112..643 | 100 | -> | Plus |
3R | 29897300..29897645 | 644..989 | 100 | -> | Plus |
3R | 29902184..29903231 | 990..2037 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29894983..29895093 | 1..111 | 100 | -> | Plus |
3R | 29896698..29897229 | 112..643 | 100 | -> | Plus |
3R | 29897300..29897645 | 644..989 | 100 | -> | Plus |
3R | 29902184..29903231 | 990..2037 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25720705..25720815 | 1..111 | 100 | -> | Plus |
arm_3R | 25723022..25723367 | 644..989 | 100 | -> | Plus |
arm_3R | 25722420..25722951 | 112..643 | 100 | -> | Plus |
arm_3R | 25727906..25728953 | 990..2037 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29635814..29635924 | 1..111 | 100 | -> | Plus |
3R | 29637529..29638060 | 112..643 | 100 | -> | Plus |
3R | 29638131..29638476 | 644..989 | 100 | -> | Plus |
3R | 29643015..29644062 | 990..2037 | 99 | Plus |
Translation from 2 to 1396
> RE56208.hyp LHANFAAKQTIYSRQTERGNTDYMFIFPILFVQIVISNVIRSLKRRLAKP LKMSEDLDELFLTPIPAPSAVELQQCILFGFRRRLHPAQIFEECRNAFGP FCPSAQYVAKWYQRFQDGFFNLDEKDDEELRIGHGGTPTTCSDYDDDSDC GEATVLPLILSEMIQRSEEDDDDDGTDGFEKESDDGLDGHVIGYWQGYGY LGGKQRYSWAGTKLGNSACELPPLPKSLIGFNKLLCSDSGLLSDVEGNNN SSDGSRKPNDNLAVETQDTKEHATDKSLPSSPNGNTSIPPMLVAKSEAKS PSLSAKGNPQAVEAGSTLDAQIATLRKEMNGLRQLDLSLLSQLWVLNESI QEFRALIEDQENEDEDDEVEVEVGNELDEEGNSRVSSSIESVRLEGGADG TSKHLGTIPKVITTQPKVLRDSLATASKDQKPVPRMRSAPPPPPPAVLQS LSLERKPPAPSRPT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31038-PC | 441 | CG31038-PC | 1..441 | 24..464 | 2298 | 100 | Plus |
CG31038-PH | 433 | CG31038-PH | 1..433 | 24..464 | 2227 | 98 | Plus |
CG31038-PG | 412 | CG31038-PG | 1..412 | 53..464 | 2160 | 100 | Plus |
CG31038-PE | 730 | CG31038-PE | 479..730 | 213..464 | 1269 | 99.6 | Plus |
CG31038-PA | 730 | CG31038-PA | 479..730 | 213..464 | 1269 | 99.6 | Plus |
Translation from 71 to 1396
> RE56208.pep MFIFPILFVQIVISNVIRSLKRRLAKPLKMSEDLDELFLTPIPAPSAVEL QQCILFGFRRRLHPAQIFEECRNAFGPFCPSAQYVAKWYQRFQDGFFNLD EKDDEELRIGHGGTPTTCSDYDDDSDCGEATVLPLILSEMIQRSEEDDDD DGTDGFEKESDDGLDGHVIGYWQGYGYLGGKQRYSWAGTKLGNSACELPP LPKSLIGFNKLLCSDSGLLSDVEGNNNSSDGSRKPNDNLAVETQDTKEHA TDKSLPSSPNGNTSIPPMLVAKSEAKSPSLSAKGNPQAVEAGSTLDAQIA TLRKEMNGLRQLDLSLLSQLWVLNESIQEFRALIEDQENEDEDDEVEVEV GNELDEEGNSRVSSSIESVRLEGGADGTSKHLGTIPKVITTQPKVLRDSL ATASKDQKPVPRMRSAPPPPPPAVLQSLSLERKPPAPSRPT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18801-PA | 718 | GF18801-PA | 480..718 | 189..441 | 596 | 64.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11705-PA | 729 | GG11705-PA | 481..729 | 190..441 | 933 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16740-PA | 457 | GH16740-PA | 1..457 | 1..441 | 767 | 51.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31038-PC | 441 | CG31038-PC | 1..441 | 1..441 | 2298 | 100 | Plus |
CG31038-PH | 433 | CG31038-PH | 1..433 | 1..441 | 2227 | 98 | Plus |
CG31038-PG | 412 | CG31038-PG | 1..412 | 30..441 | 2160 | 100 | Plus |
CG31038-PE | 730 | CG31038-PE | 479..730 | 190..441 | 1269 | 99.6 | Plus |
CG31038-PA | 730 | CG31038-PA | 479..730 | 190..441 | 1269 | 99.6 | Plus |
CG31038-PD | 605 | CG31038-PD | 479..595 | 190..306 | 588 | 99.1 | Plus |
CG31038-PB | 605 | CG31038-PB | 479..595 | 190..306 | 588 | 99.1 | Plus |
lmgB-PD | 365 | CG34441-PD | 16..320 | 198..422 | 195 | 27.6 | Plus |
lmgB-PC | 365 | CG34441-PC | 16..320 | 198..422 | 195 | 27.6 | Plus |
lmgB-PB | 365 | CG34441-PB | 16..320 | 198..422 | 195 | 27.6 | Plus |
lmgB-PA | 365 | CG34441-PA | 16..320 | 198..422 | 195 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22306-PA | 520 | GI22306-PA | 1..229 | 1..223 | 657 | 57.5 | Plus |
Dmoj\GI22306-PA | 520 | GI22306-PA | 365..520 | 291..441 | 269 | 60.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14036-PA | 804 | GL14036-PA | 523..804 | 190..441 | 356 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15957-PD | 481 | GA15957-PD | 1..481 | 1..441 | 916 | 54.2 | Plus |
Dpse\GA15957-PC | 830 | GA15957-PC | 555..830 | 190..441 | 330 | 51.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12835-PA | 730 | GM12835-PA | 481..730 | 190..441 | 1218 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21479-PA | 136 | GD21479-PA | 4..136 | 307..441 | 654 | 97.8 | Plus |
Dsim\GD21478-PA | 580 | GD21478-PA | 481..577 | 190..286 | 437 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10492-PA | 514 | GJ10492-PA | 1..235 | 1..223 | 629 | 56.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13363-PA | 824 | GK13363-PA | 659..797 | 291..415 | 241 | 56.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23896-PA | 724 | GE23896-PA | 480..724 | 190..441 | 903 | 86.6 | Plus |