BDGP Sequence Production Resources |
Search the DGRC for RE56218
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 562 |
Well: | 18 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10195-RB |
Protein status: | RE56218.pep: gold |
Preliminary Size: | 1041 |
Sequenced Size: | 1487 |
Gene | Date | Evidence |
---|---|---|
CG10195 | 2001-12-14 | Blastp of sequenced clone |
CG10195 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10195 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10195 | 2008-04-29 | Release 5.5 accounting |
CG10195 | 2008-08-15 | Release 5.9 accounting |
CG10195 | 2008-12-18 | 5.12 accounting |
1487 bp (1487 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071509
> RE56218.complete GCAATCAGCTGATTGGAGGGAACAAAACAACCTTTTGATTTCGTTTTCTT TGTGGATGGAACTAAACAGTTTTGCTACTCATTTGGCTAAATAAAAGCAG ATATGAGCCAACCTGCATCTCCTACCAAGTGGCGCACCTCGGCCAGTGTA ATCCTGGTGTCCAGAGATGATGGCAATAACAAAGATTACAAGGTGCTTAT GCTAAAACGCAGTGATGCCACGGCGATTGCGCTCAATCAGACTGTATTTC CCGGTGGCCTCTTGGACTCTGGGGCCGATGAAAGCGTCGCCTGGCTGCAC TACCTCGAGGAGTTTGGTGTTCCACAAGAGGCACTACGCCGCCTGGTTCT CATCCGCGAAGATCGTCCTGCCATTCTGGCGCCCCAGGGCACTGGCTGCT ACGATCGGTTCTTTAAGCGTTCCCGCATTTGGGCTCGGGAGATTACGCTG CGACTAACCGCCGTGAGGGAATGCTTTGAAGAGGTGGGTCTGTTGCTTTG CCGGAGTCGGAGTCAACTGGATTTTGGTGCGGTAACTTGCGCTCAGGCTG TTCCAGACCTGGAGTCGTGGCAGCGAAGGGTGCACAACAAGCCGGCTGAG TTTCTAACTCTCTGCCGCGAGCTAAATGTAGTTCCAGATTTGTGGGCTCT GCATGAGTGGTCTGCCTGGGCGAGTCCAGGATTCATACGCAAAGGGCATG AAACCGTTTTCTTCATGGCTTTTGTGGACAAGCAGCCCGAATTGCTGGAA GAACCTTCCGAGGTCAAGGAAACGCTGTGGCTGACACCCGTTGAACTGCT GCGACTGGCTGATTTGGGCAATGTTTGGTTCATGCCACCACAGGTCTACG AATTGTCCCGGTTGATGGGAATTAAGGCGTATCAATCCCTGTTGGAATTT GCCATCAAGCGCAGCGGATTGGGAACGACCATGTTCTTGCCGATTGGTTA TAACTGCCAGGGCTCTATGGTTTTCGTCTTACCTGGCGATGACTTCTATG TTCCCGAACCTCACTTGGTTCACGAAATAATCAGTTTTCCGGGATCAGAA GAAGAGTTTAGGGCTCGTTCAAAGCATCTGCATCGCTATACCTATGGTCC TGGTGTTCGAAACTTGGAGTTAAATATTGCGCCGCCAAATGGACACTTGA AACCGCTGAAATTTCAGGCGGAGCGCCAAAAGCTGTAATCACATTCCGTA GCTGGACGGGTGGTGACCCCAGCTGCTAAGCTCTGATAAGATGCTAAATG TGAATCCTGAAATGGGGCAGTCACAAATTGGTGTTTTGAAATTATTTTAA GCGGCTTTAGCTGGCCATCAAATTATCACGACGGTGTCTCCTAAGAGCAT TAATTATTATTTTATGGGACAATTTTAATTAAAAAATGTACAGTTTAATT TAAAGTTAAGTAAAGGCACTTAGCTTAAGATGAAGGTGGTCCCGTTCGGG AATAAACTCTTTATGGCTAGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 19481419..19481905 | 1471..985 | 2435 | 100 | Minus |
chr2L | 23010047 | chr2L | 19482430..19482689 | 696..437 | 1300 | 100 | Minus |
chr2L | 23010047 | chr2L | 19482755..19483002 | 438..191 | 1225 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 19481968..19482177 | 986..777 | 1050 | 100 | Minus |
chr2L | 23010047 | chr2L | 19483053..19483244 | 193..2 | 960 | 100 | Minus |
chr2L | 23010047 | chr2L | 19482234..19482316 | 777..695 | 415 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19482876..19483363 | 1472..985 | 2440 | 100 | Minus |
2L | 23513712 | 2L | 19483888..19484147 | 696..437 | 1300 | 100 | Minus |
2L | 23513712 | 2L | 19484213..19484460 | 438..191 | 1240 | 100 | Minus |
2L | 23513712 | 2L | 19483426..19483635 | 986..777 | 1050 | 100 | Minus |
2L | 23513712 | 2L | 19484511..19484702 | 193..2 | 960 | 100 | Minus |
2L | 23513712 | 2L | 19483692..19483774 | 777..695 | 415 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 19482876..19483363 | 1472..985 | 2440 | 100 | Minus |
2L | 23513712 | 2L | 19483888..19484147 | 696..437 | 1300 | 100 | Minus |
2L | 23513712 | 2L | 19484213..19484460 | 438..191 | 1240 | 100 | Minus |
2L | 23513712 | 2L | 19483426..19483635 | 986..777 | 1050 | 100 | Minus |
2L | 23513712 | 2L | 19484511..19484702 | 193..2 | 960 | 100 | Minus |
2L | 23513712 | 2L | 19483692..19483774 | 777..695 | 415 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 19481419..19481904 | 986..1471 | 100 | <- | Minus |
chr2L | 19481969..19482176 | 778..985 | 100 | <- | Minus |
chr2L | 19482234..19482315 | 696..777 | 100 | <- | Minus |
chr2L | 19482431..19482688 | 438..695 | 100 | <- | Minus |
chr2L | 19482756..19483000 | 193..437 | 99 | <- | Minus |
chr2L | 19483050..19483244 | 1..192 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10195-RA | 1..1026 | 167..1188 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10195-RB | 1..1086 | 103..1188 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10195-RC | 1..1086 | 103..1188 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10195-RA | 1..1026 | 167..1188 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10195-RC | 1..1086 | 103..1188 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10195-RA | 1..1474 | 2..1471 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10195-RB | 1..1470 | 2..1471 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10195-RC | 3..1473 | 1..1471 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10195-RA | 1..1474 | 2..1471 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10195-RC | 3..1473 | 1..1471 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19482877..19483362 | 986..1471 | 100 | <- | Minus |
2L | 19483427..19483634 | 778..985 | 100 | <- | Minus |
2L | 19483692..19483773 | 696..777 | 100 | <- | Minus |
2L | 19483889..19484146 | 438..695 | 100 | <- | Minus |
2L | 19484214..19484458 | 193..437 | 100 | <- | Minus |
2L | 19484508..19484702 | 1..192 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19482877..19483362 | 986..1471 | 100 | <- | Minus |
2L | 19483427..19483634 | 778..985 | 100 | <- | Minus |
2L | 19483692..19483773 | 696..777 | 100 | <- | Minus |
2L | 19483889..19484146 | 438..695 | 100 | <- | Minus |
2L | 19484214..19484458 | 193..437 | 100 | <- | Minus |
2L | 19484508..19484702 | 1..192 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19482877..19483362 | 986..1471 | 100 | <- | Minus |
2L | 19483427..19483634 | 778..985 | 100 | <- | Minus |
2L | 19483692..19483773 | 696..777 | 100 | <- | Minus |
2L | 19483889..19484146 | 438..695 | 100 | <- | Minus |
2L | 19484214..19484458 | 193..437 | 100 | <- | Minus |
2L | 19484508..19484702 | 1..192 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 19483427..19483634 | 778..985 | 100 | <- | Minus |
arm_2L | 19482877..19483362 | 986..1471 | 100 | <- | Minus |
arm_2L | 19483692..19483773 | 696..777 | 100 | <- | Minus |
arm_2L | 19483889..19484146 | 438..695 | 100 | <- | Minus |
arm_2L | 19484214..19484458 | 193..437 | 100 | <- | Minus |
arm_2L | 19484508..19484702 | 1..192 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 19482877..19483362 | 986..1471 | 100 | <- | Minus |
2L | 19483427..19483634 | 778..985 | 100 | <- | Minus |
2L | 19483692..19483773 | 696..777 | 100 | <- | Minus |
2L | 19483889..19484146 | 438..695 | 100 | <- | Minus |
2L | 19484214..19484458 | 193..437 | 100 | <- | Minus |
2L | 19484508..19484702 | 1..192 | 97 | Minus |
Translation from 102 to 1187
> RE56218.pep MSQPASPTKWRTSASVILVSRDDGNNKDYKVLMLKRSDATAIALNQTVFP GGLLDSGADESVAWLHYLEEFGVPQEALRRLVLIREDRPAILAPQGTGCY DRFFKRSRIWAREITLRLTAVRECFEEVGLLLCRSRSQLDFGAVTCAQAV PDLESWQRRVHNKPAEFLTLCRELNVVPDLWALHEWSAWASPGFIRKGHE TVFFMAFVDKQPELLEEPSEVKETLWLTPVELLRLADLGNVWFMPPQVYE LSRLMGIKAYQSLLEFAIKRSGLGTTMFLPIGYNCQGSMVFVLPGDDFYV PEPHLVHEIISFPGSEEEFRARSKHLHRYTYGPGVRNLELNIAPPNGHLK PLKFQAERQKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15631-PA | 342 | GF15631-PA | 12..342 | 31..361 | 1368 | 75.3 | Plus |
Dana\GF14240-PA | 353 | GF14240-PA | 2..341 | 10..350 | 589 | 38 | Plus |
Dana\GF15630-PA | 352 | GF15630-PA | 8..347 | 9..352 | 560 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21629-PA | 341 | GG21629-PA | 10..341 | 30..361 | 1608 | 89.2 | Plus |
Dere\GG21628-PA | 351 | GG21628-PA | 7..346 | 9..352 | 550 | 34.6 | Plus |
Dere\GG21188-PA | 361 | GG21188-PA | 9..348 | 10..349 | 536 | 34.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10627-PA | 338 | GH10627-PA | 1..338 | 33..361 | 1117 | 65.7 | Plus |
Dgri\GH11106-PA | 360 | GH11106-PA | 7..348 | 6..350 | 626 | 41.5 | Plus |
Dgri\GH10625-PA | 349 | GH10625-PA | 8..344 | 9..352 | 534 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10195-PB | 361 | CG10195-PB | 1..361 | 1..361 | 1910 | 100 | Plus |
CG10195-PC | 361 | CG10195-PC | 1..361 | 1..361 | 1910 | 100 | Plus |
CG18094-PB | 360 | CG18094-PB | 8..347 | 10..349 | 540 | 35.3 | Plus |
CG18094-PA | 360 | CG18094-PA | 8..347 | 10..349 | 540 | 35.3 | Plus |
CG10194-PA | 351 | CG10194-PA | 7..321 | 9..328 | 535 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19813-PA | 333 | GI19813-PA | 1..333 | 33..361 | 1065 | 61.3 | Plus |
Dmoj\GI18228-PA | 358 | GI18228-PA | 8..348 | 9..353 | 602 | 39.4 | Plus |
Dmoj\GI19791-PA | 233 | GI19791-PA | 1..228 | 128..352 | 433 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21101-PA | 359 | GL21101-PA | 3..359 | 5..361 | 1404 | 71.1 | Plus |
Dper\GL21217-PA | 362 | GL21217-PA | 10..350 | 10..350 | 640 | 38.7 | Plus |
Dper\GL21100-PA | 352 | GL21100-PA | 8..347 | 9..352 | 554 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA29071-PA | 359 | GA29071-PA | 3..359 | 5..361 | 1397 | 71.1 | Plus |
Dpse\GA28769-PA | 362 | GA28769-PA | 10..350 | 10..350 | 642 | 39 | Plus |
Dpse\GA10146-PA | 352 | GA10146-PA | 8..347 | 9..352 | 554 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17007-PA | 341 | GM17007-PA | 10..341 | 30..361 | 1706 | 95.8 | Plus |
Dsec\GM17006-PA | 351 | GM17006-PA | 7..346 | 9..352 | 543 | 34.3 | Plus |
Dsec\GM17354-PA | 360 | GM17354-PA | 8..350 | 10..353 | 537 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21756-PA | 341 | GD21756-PA | 10..341 | 30..361 | 1698 | 95.2 | Plus |
Dsim\GD21755-PA | 351 | GD21755-PA | 7..346 | 9..352 | 542 | 34.6 | Plus |
Dsim\GD24212-PA | 223 | GD24212-PA | 8..222 | 10..230 | 335 | 34.3 | Plus |
Dsim\GD24213-PA | 118 | GD24213-PA | 3..108 | 248..353 | 178 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18098-PA | 376 | GJ18098-PA | 5..376 | 1..361 | 1240 | 65.4 | Plus |
Dvir\GJ18096-PA | 346 | GJ18096-PA | 8..341 | 9..352 | 602 | 38.4 | Plus |
Dvir\GJ18136-PA | 360 | GJ18136-PA | 12..347 | 10..349 | 601 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24223-PA | 340 | GK24223-PA | 1..339 | 1..338 | 1245 | 67.6 | Plus |
Dwil\GK18187-PA | 358 | GK18187-PA | 7..345 | 5..349 | 608 | 38.1 | Plus |
Dwil\GK18202-PA | 347 | GK18202-PA | 7..342 | 8..352 | 554 | 35.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12649-PA | 365 | GE12649-PA | 1..365 | 1..361 | 1673 | 85.5 | Plus |
Dyak\GE12648-PA | 351 | GE12648-PA | 7..346 | 9..352 | 542 | 34.1 | Plus |
Dyak\GE13260-PA | 361 | GE13260-PA | 6..351 | 7..353 | 534 | 34.6 | Plus |
Translation from 166 to 1187
> RE56218.hyp MMAITKITRKVLMLKRSDATAIALNQTVFPGGLLDSGADESVAWLHYLEE FGVPQEALRRLVLIREDRPAILAPQGTGCYDRFFKRSRIWAREITLRLTA VRECFEEVGLLLCRSRSQLDFGAVTCAQAVPDLESWQRRVHNKPAEFLTL CRELNVVPDLWALHEWSAWASPGFIRKGHETVFFMAFVDKQPELLEEPSE VKETLWLTPVELLRLADLGNVWFMPPQVYELSRLMGIKAYQSLLEFAIKR SGLGTTMFLPIGYNCQGSMVFVLPGDDFYVPEPHLVHEIISFPGSEEEFR ARSKHLHRYTYGPGVRNLELNIAPPNGHLKPLKFQAERQKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10195-PB | 361 | CG10195-PB | 30..361 | 10..341 | 1758 | 100 | Plus |
CG10195-PC | 361 | CG10195-PC | 30..361 | 10..341 | 1758 | 100 | Plus |
CG10194-PA | 351 | CG10194-PA | 26..321 | 5..308 | 508 | 36.2 | Plus |
CG18094-PB | 360 | CG18094-PB | 29..347 | 10..329 | 505 | 35.2 | Plus |
CG18094-PA | 360 | CG18094-PA | 29..347 | 10..329 | 505 | 35.2 | Plus |