Clone RE56218 Report

Search the DGRC for RE56218

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:562
Well:18
Vector:pFlc-1
Associated Gene/TranscriptCG10195-RB
Protein status:RE56218.pep: gold
Preliminary Size:1041
Sequenced Size:1487

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10195 2001-12-14 Blastp of sequenced clone
CG10195 2002-01-01 Sim4 clustering to Release 2
CG10195 2003-01-01 Sim4 clustering to Release 3
CG10195 2008-04-29 Release 5.5 accounting
CG10195 2008-08-15 Release 5.9 accounting
CG10195 2008-12-18 5.12 accounting

Clone Sequence Records

RE56218.complete Sequence

1487 bp (1487 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071509

> RE56218.complete
GCAATCAGCTGATTGGAGGGAACAAAACAACCTTTTGATTTCGTTTTCTT
TGTGGATGGAACTAAACAGTTTTGCTACTCATTTGGCTAAATAAAAGCAG
ATATGAGCCAACCTGCATCTCCTACCAAGTGGCGCACCTCGGCCAGTGTA
ATCCTGGTGTCCAGAGATGATGGCAATAACAAAGATTACAAGGTGCTTAT
GCTAAAACGCAGTGATGCCACGGCGATTGCGCTCAATCAGACTGTATTTC
CCGGTGGCCTCTTGGACTCTGGGGCCGATGAAAGCGTCGCCTGGCTGCAC
TACCTCGAGGAGTTTGGTGTTCCACAAGAGGCACTACGCCGCCTGGTTCT
CATCCGCGAAGATCGTCCTGCCATTCTGGCGCCCCAGGGCACTGGCTGCT
ACGATCGGTTCTTTAAGCGTTCCCGCATTTGGGCTCGGGAGATTACGCTG
CGACTAACCGCCGTGAGGGAATGCTTTGAAGAGGTGGGTCTGTTGCTTTG
CCGGAGTCGGAGTCAACTGGATTTTGGTGCGGTAACTTGCGCTCAGGCTG
TTCCAGACCTGGAGTCGTGGCAGCGAAGGGTGCACAACAAGCCGGCTGAG
TTTCTAACTCTCTGCCGCGAGCTAAATGTAGTTCCAGATTTGTGGGCTCT
GCATGAGTGGTCTGCCTGGGCGAGTCCAGGATTCATACGCAAAGGGCATG
AAACCGTTTTCTTCATGGCTTTTGTGGACAAGCAGCCCGAATTGCTGGAA
GAACCTTCCGAGGTCAAGGAAACGCTGTGGCTGACACCCGTTGAACTGCT
GCGACTGGCTGATTTGGGCAATGTTTGGTTCATGCCACCACAGGTCTACG
AATTGTCCCGGTTGATGGGAATTAAGGCGTATCAATCCCTGTTGGAATTT
GCCATCAAGCGCAGCGGATTGGGAACGACCATGTTCTTGCCGATTGGTTA
TAACTGCCAGGGCTCTATGGTTTTCGTCTTACCTGGCGATGACTTCTATG
TTCCCGAACCTCACTTGGTTCACGAAATAATCAGTTTTCCGGGATCAGAA
GAAGAGTTTAGGGCTCGTTCAAAGCATCTGCATCGCTATACCTATGGTCC
TGGTGTTCGAAACTTGGAGTTAAATATTGCGCCGCCAAATGGACACTTGA
AACCGCTGAAATTTCAGGCGGAGCGCCAAAAGCTGTAATCACATTCCGTA
GCTGGACGGGTGGTGACCCCAGCTGCTAAGCTCTGATAAGATGCTAAATG
TGAATCCTGAAATGGGGCAGTCACAAATTGGTGTTTTGAAATTATTTTAA
GCGGCTTTAGCTGGCCATCAAATTATCACGACGGTGTCTCCTAAGAGCAT
TAATTATTATTTTATGGGACAATTTTAATTAAAAAATGTACAGTTTAATT
TAAAGTTAAGTAAAGGCACTTAGCTTAAGATGAAGGTGGTCCCGTTCGGG
AATAAACTCTTTATGGCTAGCAAAAAAAAAAAAAAAA

RE56218.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10195.a 1829 CG10195.a 1..1475 2..1472 7290 99.7 Plus
CG10195-RA 1483 CG10195-RA 1..1475 2..1472 7290 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19481419..19481905 1471..985 2435 100 Minus
chr2L 23010047 chr2L 19482430..19482689 696..437 1300 100 Minus
chr2L 23010047 chr2L 19482755..19483002 438..191 1225 99.6 Minus
chr2L 23010047 chr2L 19481968..19482177 986..777 1050 100 Minus
chr2L 23010047 chr2L 19483053..19483244 193..2 960 100 Minus
chr2L 23010047 chr2L 19482234..19482316 777..695 415 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:04:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19482876..19483363 1472..985 2440 100 Minus
2L 23513712 2L 19483888..19484147 696..437 1300 100 Minus
2L 23513712 2L 19484213..19484460 438..191 1240 100 Minus
2L 23513712 2L 19483426..19483635 986..777 1050 100 Minus
2L 23513712 2L 19484511..19484702 193..2 960 100 Minus
2L 23513712 2L 19483692..19483774 777..695 415 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19482876..19483363 1472..985 2440 100 Minus
2L 23513712 2L 19483888..19484147 696..437 1300 100 Minus
2L 23513712 2L 19484213..19484460 438..191 1240 100 Minus
2L 23513712 2L 19483426..19483635 986..777 1050 100 Minus
2L 23513712 2L 19484511..19484702 193..2 960 100 Minus
2L 23513712 2L 19483692..19483774 777..695 415 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:19:39 has no hits.

RE56218.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:20:30 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19481419..19481904 986..1471 100 <- Minus
chr2L 19481969..19482176 778..985 100 <- Minus
chr2L 19482234..19482315 696..777 100 <- Minus
chr2L 19482431..19482688 438..695 100 <- Minus
chr2L 19482756..19483000 193..437 99 <- Minus
chr2L 19483050..19483244 1..192 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:24:52 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
CG10195-RA 1..1026 167..1188 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:30 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
CG10195-RB 1..1086 103..1188 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:25 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
CG10195-RC 1..1086 103..1188 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:00 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
CG10195-RA 1..1026 167..1188 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:58 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
CG10195-RC 1..1086 103..1188 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:34:51 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
CG10195-RA 1..1474 2..1471 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:30 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
CG10195-RB 1..1470 2..1471 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:25 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
CG10195-RC 3..1473 1..1471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:00 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
CG10195-RA 1..1474 2..1471 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:58 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
CG10195-RC 3..1473 1..1471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:30 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19482877..19483362 986..1471 100 <- Minus
2L 19483427..19483634 778..985 100 <- Minus
2L 19483692..19483773 696..777 100 <- Minus
2L 19483889..19484146 438..695 100 <- Minus
2L 19484214..19484458 193..437 100 <- Minus
2L 19484508..19484702 1..192 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:30 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19482877..19483362 986..1471 100 <- Minus
2L 19483427..19483634 778..985 100 <- Minus
2L 19483692..19483773 696..777 100 <- Minus
2L 19483889..19484146 438..695 100 <- Minus
2L 19484214..19484458 193..437 100 <- Minus
2L 19484508..19484702 1..192 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:30 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19482877..19483362 986..1471 100 <- Minus
2L 19483427..19483634 778..985 100 <- Minus
2L 19483692..19483773 696..777 100 <- Minus
2L 19483889..19484146 438..695 100 <- Minus
2L 19484214..19484458 193..437 100 <- Minus
2L 19484508..19484702 1..192 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:25 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19483427..19483634 778..985 100 <- Minus
arm_2L 19482877..19483362 986..1471 100 <- Minus
arm_2L 19483692..19483773 696..777 100 <- Minus
arm_2L 19483889..19484146 438..695 100 <- Minus
arm_2L 19484214..19484458 193..437 100 <- Minus
arm_2L 19484508..19484702 1..192 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:07:27 Download gff for RE56218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19482877..19483362 986..1471 100 <- Minus
2L 19483427..19483634 778..985 100 <- Minus
2L 19483692..19483773 696..777 100 <- Minus
2L 19483889..19484146 438..695 100 <- Minus
2L 19484214..19484458 193..437 100 <- Minus
2L 19484508..19484702 1..192 97   Minus

RE56218.pep Sequence

Translation from 102 to 1187

> RE56218.pep
MSQPASPTKWRTSASVILVSRDDGNNKDYKVLMLKRSDATAIALNQTVFP
GGLLDSGADESVAWLHYLEEFGVPQEALRRLVLIREDRPAILAPQGTGCY
DRFFKRSRIWAREITLRLTAVRECFEEVGLLLCRSRSQLDFGAVTCAQAV
PDLESWQRRVHNKPAEFLTLCRELNVVPDLWALHEWSAWASPGFIRKGHE
TVFFMAFVDKQPELLEEPSEVKETLWLTPVELLRLADLGNVWFMPPQVYE
LSRLMGIKAYQSLLEFAIKRSGLGTTMFLPIGYNCQGSMVFVLPGDDFYV
PEPHLVHEIISFPGSEEEFRARSKHLHRYTYGPGVRNLELNIAPPNGHLK
PLKFQAERQKL*

RE56218.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15631-PA 342 GF15631-PA 12..342 31..361 1368 75.3 Plus
Dana\GF14240-PA 353 GF14240-PA 2..341 10..350 589 38 Plus
Dana\GF15630-PA 352 GF15630-PA 8..347 9..352 560 36.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21629-PA 341 GG21629-PA 10..341 30..361 1608 89.2 Plus
Dere\GG21628-PA 351 GG21628-PA 7..346 9..352 550 34.6 Plus
Dere\GG21188-PA 361 GG21188-PA 9..348 10..349 536 34.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10627-PA 338 GH10627-PA 1..338 33..361 1117 65.7 Plus
Dgri\GH11106-PA 360 GH11106-PA 7..348 6..350 626 41.5 Plus
Dgri\GH10625-PA 349 GH10625-PA 8..344 9..352 534 36.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10195-PB 361 CG10195-PB 1..361 1..361 1910 100 Plus
CG10195-PC 361 CG10195-PC 1..361 1..361 1910 100 Plus
CG18094-PB 360 CG18094-PB 8..347 10..349 540 35.3 Plus
CG18094-PA 360 CG18094-PA 8..347 10..349 540 35.3 Plus
CG10194-PA 351 CG10194-PA 7..321 9..328 535 36.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19813-PA 333 GI19813-PA 1..333 33..361 1065 61.3 Plus
Dmoj\GI18228-PA 358 GI18228-PA 8..348 9..353 602 39.4 Plus
Dmoj\GI19791-PA 233 GI19791-PA 1..228 128..352 433 42.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21101-PA 359 GL21101-PA 3..359 5..361 1404 71.1 Plus
Dper\GL21217-PA 362 GL21217-PA 10..350 10..350 640 38.7 Plus
Dper\GL21100-PA 352 GL21100-PA 8..347 9..352 554 34.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29071-PA 359 GA29071-PA 3..359 5..361 1397 71.1 Plus
Dpse\GA28769-PA 362 GA28769-PA 10..350 10..350 642 39 Plus
Dpse\GA10146-PA 352 GA10146-PA 8..347 9..352 554 34.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17007-PA 341 GM17007-PA 10..341 30..361 1706 95.8 Plus
Dsec\GM17006-PA 351 GM17006-PA 7..346 9..352 543 34.3 Plus
Dsec\GM17354-PA 360 GM17354-PA 8..350 10..353 537 34.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21756-PA 341 GD21756-PA 10..341 30..361 1698 95.2 Plus
Dsim\GD21755-PA 351 GD21755-PA 7..346 9..352 542 34.6 Plus
Dsim\GD24212-PA 223 GD24212-PA 8..222 10..230 335 34.3 Plus
Dsim\GD24213-PA 118 GD24213-PA 3..108 248..353 178 36.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18098-PA 376 GJ18098-PA 5..376 1..361 1240 65.4 Plus
Dvir\GJ18096-PA 346 GJ18096-PA 8..341 9..352 602 38.4 Plus
Dvir\GJ18136-PA 360 GJ18136-PA 12..347 10..349 601 39.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24223-PA 340 GK24223-PA 1..339 1..338 1245 67.6 Plus
Dwil\GK18187-PA 358 GK18187-PA 7..345 5..349 608 38.1 Plus
Dwil\GK18202-PA 347 GK18202-PA 7..342 8..352 554 35.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12649-PA 365 GE12649-PA 1..365 1..361 1673 85.5 Plus
Dyak\GE12648-PA 351 GE12648-PA 7..346 9..352 542 34.1 Plus
Dyak\GE13260-PA 361 GE13260-PA 6..351 7..353 534 34.6 Plus

RE56218.hyp Sequence

Translation from 166 to 1187

> RE56218.hyp
MMAITKITRKVLMLKRSDATAIALNQTVFPGGLLDSGADESVAWLHYLEE
FGVPQEALRRLVLIREDRPAILAPQGTGCYDRFFKRSRIWAREITLRLTA
VRECFEEVGLLLCRSRSQLDFGAVTCAQAVPDLESWQRRVHNKPAEFLTL
CRELNVVPDLWALHEWSAWASPGFIRKGHETVFFMAFVDKQPELLEEPSE
VKETLWLTPVELLRLADLGNVWFMPPQVYELSRLMGIKAYQSLLEFAIKR
SGLGTTMFLPIGYNCQGSMVFVLPGDDFYVPEPHLVHEIISFPGSEEEFR
ARSKHLHRYTYGPGVRNLELNIAPPNGHLKPLKFQAERQKL*

RE56218.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10195-PB 361 CG10195-PB 30..361 10..341 1758 100 Plus
CG10195-PC 361 CG10195-PC 30..361 10..341 1758 100 Plus
CG10194-PA 351 CG10194-PA 26..321 5..308 508 36.2 Plus
CG18094-PB 360 CG18094-PB 29..347 10..329 505 35.2 Plus
CG18094-PA 360 CG18094-PA 29..347 10..329 505 35.2 Plus