BDGP Sequence Production Resources |
Search the DGRC for RE56341
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 563 |
Well: | 41 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Gbs-70E-RA |
Protein status: | RE56341.pep: gold |
Sequenced Size: | 2094 |
Gene | Date | Evidence |
---|---|---|
CG9238 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9238 | 2002-04-04 | Blastp of sequenced clone |
CG9238 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9238 | 2008-04-29 | Release 5.5 accounting |
CG9238 | 2008-08-15 | Release 5.9 accounting |
CG9238 | 2008-12-18 | 5.12 accounting |
2094 bp (2094 high quality bases) assembled on 2002-04-04
GenBank Submission: AY095086
> RE56341.complete GATTCGTTTTCGCATCGTCGAAGCGTACGGTTCATAGGAGGAACGGAACG AAGCGGGGAACGCGACGGAAACTAGTTGCTGTTTTTTTGTCCGTGTTAAA TAATTGACACAAGAAAATTTAGCTACACTTAAGCAAAGTCCGCGAAAAAT CTATTAAAAATCGTTCGTCGTTTTGTGTGTGTGACCACGAAAAAAGTGCC CCGATCGGAGGATTTTAATAAATTCAATTAAGGTTCCGTCCCAACGATCG TTTTTCATTGTCTGACGCTCACGCGTGATGTACAAATGAAAAAGTAAAAA TTTAAATAAGATCAAAGAAAGAAAGATCACAGTAAAATTTAAAGTGGATT GACTGCACAAGAAAAAGAAAAGTTCCTTACCTCCTAGCCAGAAGTCAAAA GTGAAGCGGAAAACAGAGTGGAGATAACAATTAACGCTACAATGACGAGC CCAACAGAGCGTCGCGCTACTGCCGGCCCCAAGTGATAACGCTGGCCTCC AAAGCCATGGTCAACAACGCCTCGGCGGCGGTCCAGGGTCAGGGTCCCAG TCAGCAGAAGGCGGGTGCCACGCCCCTGGGCGTGGGCAGTCGTTCCGGAC GGAGTTACCTGGAGCGAATGGCCTCGGCGCCGCTACTCACCAATCAGCCC AAATCCTGTCTCAGCCGCAAATCCTGCCTGCACAAATCCCAGAACACTAC AGCCAGTTCCGCAGATCTCTCGCCGACGGACACCGATGTCGCGGACAGTG CCAGTCATAGCTGTATCTGCAGCAAGGATAGTGACAGCAACGGCGAAGTG AGCCGTGGCCCCAAAAAGCATGTGATCTTCGCTGATGATGAGGGTCTATC GCTAACCGAGGTTCGTGTGATGTCCGAACCCTCGAATGTGCCGCCATATT GGAGCATGAAGTTTCTGGAGCAAATTACACAGGGCCTGGTCAGCCCACAT CCTCCGGATCAGTGGACAGTGGACTTCAAGCAGCCAGCCTCAGACTATCT ATCATTTAGACAAAAGATAGAACGCGACTTTGTTTCCTTGGAGAATGTGA TCGTCAAGGATGAGGAATCGATTGTCGTGGGCACCATCAAGGTGAAGAAT ATCGACTTCCAGAAGGAGATCATTGTCCGTGTGACCTGGGATGATTGGAA GAGCCAGCAGGATATCTTCTGTACATACGCCAGGGCCTATGGACCGGCTA CTTGTGCTCATGTAGTCTTCGATACATTCTCCTTCAAAATCACCTTGCCG CCATCCTCCAAGCGCCTGGAATTCTGCATCTGCTATCGCACCAACGAAAC AGAATATTGGGATAATAATGATGGTAAAAACTACACCATTAGCAAGCGAT CGCCCTTTTATTACAACGCCTTGTCGCCCTATGATAAGGGTCAGAATCGC AACTCGAGCCAGCAAATAAGGTCCACCCTGACCGATGCCTTGGCCAAGGT GCAAGACCAAAATGGCTGGCACCAGGAGCCACATACGCCATATTGGTGAA ATCGCCTGGGAACGGGATTGGATTTTCCTGACCCAAGCGATTGAATAAAG TTTCTCATTTAGGCCACATGAACAGAAAGAAACAGAATTGGAAAAGATTT AAAGTGTTATAATCAGTTTCATTGACAGAGGGAGAGTCCAAAAGATTTTA CCACTAACGAAACTTTTTGACCTAAGCTAATACCCGGTACAAATATCCCA ATTTTAATGTGCCATTGACTTGAGGTTTACTCAATATAAAATGAGATAGG AGGGCTTATAACTACTTCTACTGAGCGAAGCCCGAATTTGTATGTCTTGT CTTTAGTCAACTTGATGGAATTTCAAAATCTATGTATAACTTTTTAAAAT GTTTTATGTTTGACTGTAAAGAATTTTTGGAAAAGATAGATTTATATGTT TACCTGTATGCCTGTGTGATCGTCTACATCTATATAACTGATACTAGATT TATGTTAACTAAAAACGAAAAAAAAAACCTTATAAAAATGAAAGGAGATG AATTTTGAGGCGTGAAGCATTCAAGCAAACCATTGTTTCGAAATTTACTG CAACTGCAAAATAAAGAAAACAAAAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9238.a | 2719 | CG9238.a | 38..2121 | 2..2085 | 10405 | 99.9 | Plus |
CG9238-RA | 2121 | CG9238-RA | 38..2121 | 2..2085 | 10405 | 99.9 | Plus |
CG9238.b | 2881 | CG9238.b | 635..2283 | 437..2085 | 8230 | 99.9 | Plus |
CG9238.b | 2881 | CG9238.b | 38..472 | 2..436 | 2175 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 14531649..14532404 | 2078..1323 | 3765 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 14540646..14541080 | 436..2 | 2175 | 100 | Minus |
chr3L | 24539361 | chr3L | 14537231..14537597 | 802..436 | 1820 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 14532463..14532778 | 1323..1008 | 1580 | 100 | Minus |
chr3L | 24539361 | chr3L | 14532842..14533050 | 1009..801 | 1045 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 14541533..14542295 | 2085..1323 | 3800 | 99.9 | Minus |
3L | 28110227 | 3L | 14550537..14550971 | 436..2 | 2175 | 100 | Minus |
3L | 28110227 | 3L | 14547117..14547483 | 802..436 | 1835 | 100 | Minus |
3L | 28110227 | 3L | 14542354..14542669 | 1323..1008 | 1580 | 100 | Minus |
3L | 28110227 | 3L | 14542733..14542941 | 1009..801 | 1045 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 14534633..14535395 | 2085..1323 | 3800 | 99.8 | Minus |
3L | 28103327 | 3L | 14543637..14544071 | 436..2 | 2175 | 100 | Minus |
3L | 28103327 | 3L | 14540217..14540583 | 802..436 | 1835 | 100 | Minus |
3L | 28103327 | 3L | 14535454..14535769 | 1323..1008 | 1580 | 100 | Minus |
3L | 28103327 | 3L | 14535833..14536041 | 1009..801 | 1045 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\Vege | 884 | Dwil\Vege VEGE 884bp Derived from AF518730. | 790..851 | 2016..2075 | 125 | 69.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 14531670..14532404 | 1323..2057 | 99 | <- | Minus |
chr3L | 14532464..14532776 | 1010..1322 | 100 | <- | Minus |
chr3L | 14532842..14533048 | 803..1009 | 100 | <- | Minus |
chr3L | 14537231..14537596 | 437..802 | 99 | <- | Minus |
chr3L | 14540646..14541080 | 1..436 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9238-RB | 91..1155 | 433..1499 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9238-RB | 91..1155 | 433..1499 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9238-RB | 91..1155 | 433..1499 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9238-RB | 91..1155 | 433..1499 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gbs-70E-RB | 91..1155 | 433..1499 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9238-RA | 1..2056 | 2..2057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9238-RA | 1..2056 | 2..2057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9238-RA | 4..2060 | 1..2057 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9238-RA | 1..2056 | 2..2057 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gbs-70E-RA | 4..2060 | 1..2057 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14541561..14542295 | 1323..2057 | 100 | <- | Minus |
3L | 14542355..14542667 | 1010..1322 | 100 | <- | Minus |
3L | 14542733..14542939 | 803..1009 | 100 | <- | Minus |
3L | 14547117..14547482 | 437..802 | 100 | <- | Minus |
3L | 14550537..14550971 | 1..436 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14541561..14542295 | 1323..2057 | 100 | <- | Minus |
3L | 14542355..14542667 | 1010..1322 | 100 | <- | Minus |
3L | 14542733..14542939 | 803..1009 | 100 | <- | Minus |
3L | 14547117..14547482 | 437..802 | 100 | <- | Minus |
3L | 14550537..14550971 | 1..436 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14541561..14542295 | 1323..2057 | 100 | <- | Minus |
3L | 14542355..14542667 | 1010..1322 | 100 | <- | Minus |
3L | 14542733..14542939 | 803..1009 | 100 | <- | Minus |
3L | 14547117..14547482 | 437..802 | 100 | <- | Minus |
3L | 14550537..14550971 | 1..436 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 14535455..14535767 | 1010..1322 | 100 | <- | Minus |
arm_3L | 14535833..14536039 | 803..1009 | 100 | <- | Minus |
arm_3L | 14534661..14535395 | 1323..2057 | 100 | <- | Minus |
arm_3L | 14540217..14540582 | 437..802 | 100 | <- | Minus |
arm_3L | 14543637..14544071 | 1..436 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14534661..14535395 | 1323..2057 | 100 | <- | Minus |
3L | 14535455..14535767 | 1010..1322 | 100 | <- | Minus |
3L | 14535833..14536039 | 803..1009 | 100 | <- | Minus |
3L | 14540217..14540582 | 437..802 | 100 | <- | Minus |
3L | 14543637..14544071 | 1..436 | 99 | Minus |
Translation from 506 to 1498
> RE56341.hyp MVNNASAAVQGQGPSQQKAGATPLGVGSRSGRSYLERMASAPLLTNQPKS CLSRKSCLHKSQNTTASSADLSPTDTDVADSASHSCICSKDSDSNGEVSR GPKKHVIFADDEGLSLTEVRVMSEPSNVPPYWSMKFLEQITQGLVSPHPP DQWTVDFKQPASDYLSFRQKIERDFVSLENVIVKDEESIVVGTIKVKNID FQKEIIVRVTWDDWKSQQDIFCTYARAYGPATCAHVVFDTFSFKITLPPS SKRLEFCICYRTNETEYWDNNDGKNYTISKRSPFYYNALSPYDKGQNRNS SQQIRSTLTDALAKVQDQNGWHQEPHTPYW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gbs-70E-PA | 330 | CG9238-PA | 1..330 | 1..330 | 1761 | 100 | Plus |
Gbs-70E-PC | 384 | CG9238-PC | 55..384 | 1..330 | 1761 | 100 | Plus |
Gbs-70E-PB | 384 | CG9238-PB | 55..384 | 1..330 | 1761 | 100 | Plus |
Gbs-76A-PD | 681 | CG9619-PD | 454..629 | 101..276 | 175 | 28.9 | Plus |
Gbs-76A-PC | 681 | CG9619-PC | 454..629 | 101..276 | 175 | 28.9 | Plus |
Translation from 506 to 1498
> RE56341.pep MVNNASAAVQGQGPSQQKAGATPLGVGSRSGRSYLERMASAPLLTNQPKS CLSRKSCLHKSQNTTASSADLSPTDTDVADSASHSCICSKDSDSNGEVSR GPKKHVIFADDEGLSLTEVRVMSEPSNVPPYWSMKFLEQITQGLVSPHPP DQWTVDFKQPASDYLSFRQKIERDFVSLENVIVKDEESIVVGTIKVKNID FQKEIIVRVTWDDWKSQQDIFCTYARAYGPATCAHVVFDTFSFKITLPPS SKRLEFCICYRTNETEYWDNNDGKNYTISKRSPFYYNALSPYDKGQNRNS SQQIRSTLTDALAKVQDQNGWHQEPHTPYW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25195-PA | 393 | GF25195-PA | 57..393 | 1..330 | 1564 | 88.7 | Plus |
Dana\GF10772-PA | 647 | GF10772-PA | 419..594 | 101..276 | 190 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13723-PA | 384 | GG13723-PA | 55..384 | 1..330 | 1763 | 98.8 | Plus |
Dere\GG13414-PA | 685 | GG13414-PA | 458..633 | 101..276 | 183 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16807-PA | 379 | GH16807-PA | 56..379 | 1..330 | 1317 | 78 | Plus |
Dgri\GH14417-PA | 595 | GH14417-PA | 371..546 | 101..276 | 187 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gbs-70E-PC | 384 | CG9238-PC | 55..384 | 1..330 | 1761 | 100 | Plus |
Gbs-70E-PB | 384 | CG9238-PB | 55..384 | 1..330 | 1761 | 100 | Plus |
Gbs-70E-PA | 330 | CG9238-PA | 1..330 | 1..330 | 1761 | 100 | Plus |
Gbs-76A-PD | 681 | CG9619-PD | 454..629 | 101..276 | 175 | 28.9 | Plus |
Gbs-76A-PC | 681 | CG9619-PC | 454..629 | 101..276 | 175 | 28.9 | Plus |
Gbs-76A-PB | 681 | CG9619-PB | 454..629 | 101..276 | 175 | 28.9 | Plus |
Gbs-76A-PA | 681 | CG9619-PA | 454..629 | 101..276 | 175 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13819-PA | 380 | GI13819-PA | 56..380 | 1..330 | 1413 | 81.8 | Plus |
Dmoj\GI13546-PA | 576 | GI13546-PA | 354..529 | 101..276 | 191 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20988-PA | 383 | GL20988-PA | 55..383 | 1..330 | 1511 | 85.3 | Plus |
Dper\GL20910-PA | 655 | GL20910-PA | 432..606 | 101..276 | 179 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21633-PA | 383 | GA21633-PA | 55..383 | 1..330 | 1511 | 85.3 | Plus |
Dpse\GA21917-PA | 656 | GA21917-PA | 432..607 | 101..276 | 184 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24544-PA | 384 | GM24544-PA | 55..384 | 1..330 | 1763 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12617-PA | 384 | GD12617-PA | 55..384 | 1..330 | 1778 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11686-PA | 385 | GJ11686-PA | 56..385 | 1..330 | 1415 | 81.9 | Plus |
Dvir\GJ11905-PA | 563 | GJ11905-PA | 341..516 | 101..276 | 187 | 29.4 | Plus |