Clone RE56341 Report

Search the DGRC for RE56341

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:563
Well:41
Vector:pFlc-1
Associated Gene/TranscriptGbs-70E-RA
Protein status:RE56341.pep: gold
Sequenced Size:2094

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9238 2002-01-01 Sim4 clustering to Release 2
CG9238 2002-04-04 Blastp of sequenced clone
CG9238 2003-01-01 Sim4 clustering to Release 3
CG9238 2008-04-29 Release 5.5 accounting
CG9238 2008-08-15 Release 5.9 accounting
CG9238 2008-12-18 5.12 accounting

Clone Sequence Records

RE56341.complete Sequence

2094 bp (2094 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095086

> RE56341.complete
GATTCGTTTTCGCATCGTCGAAGCGTACGGTTCATAGGAGGAACGGAACG
AAGCGGGGAACGCGACGGAAACTAGTTGCTGTTTTTTTGTCCGTGTTAAA
TAATTGACACAAGAAAATTTAGCTACACTTAAGCAAAGTCCGCGAAAAAT
CTATTAAAAATCGTTCGTCGTTTTGTGTGTGTGACCACGAAAAAAGTGCC
CCGATCGGAGGATTTTAATAAATTCAATTAAGGTTCCGTCCCAACGATCG
TTTTTCATTGTCTGACGCTCACGCGTGATGTACAAATGAAAAAGTAAAAA
TTTAAATAAGATCAAAGAAAGAAAGATCACAGTAAAATTTAAAGTGGATT
GACTGCACAAGAAAAAGAAAAGTTCCTTACCTCCTAGCCAGAAGTCAAAA
GTGAAGCGGAAAACAGAGTGGAGATAACAATTAACGCTACAATGACGAGC
CCAACAGAGCGTCGCGCTACTGCCGGCCCCAAGTGATAACGCTGGCCTCC
AAAGCCATGGTCAACAACGCCTCGGCGGCGGTCCAGGGTCAGGGTCCCAG
TCAGCAGAAGGCGGGTGCCACGCCCCTGGGCGTGGGCAGTCGTTCCGGAC
GGAGTTACCTGGAGCGAATGGCCTCGGCGCCGCTACTCACCAATCAGCCC
AAATCCTGTCTCAGCCGCAAATCCTGCCTGCACAAATCCCAGAACACTAC
AGCCAGTTCCGCAGATCTCTCGCCGACGGACACCGATGTCGCGGACAGTG
CCAGTCATAGCTGTATCTGCAGCAAGGATAGTGACAGCAACGGCGAAGTG
AGCCGTGGCCCCAAAAAGCATGTGATCTTCGCTGATGATGAGGGTCTATC
GCTAACCGAGGTTCGTGTGATGTCCGAACCCTCGAATGTGCCGCCATATT
GGAGCATGAAGTTTCTGGAGCAAATTACACAGGGCCTGGTCAGCCCACAT
CCTCCGGATCAGTGGACAGTGGACTTCAAGCAGCCAGCCTCAGACTATCT
ATCATTTAGACAAAAGATAGAACGCGACTTTGTTTCCTTGGAGAATGTGA
TCGTCAAGGATGAGGAATCGATTGTCGTGGGCACCATCAAGGTGAAGAAT
ATCGACTTCCAGAAGGAGATCATTGTCCGTGTGACCTGGGATGATTGGAA
GAGCCAGCAGGATATCTTCTGTACATACGCCAGGGCCTATGGACCGGCTA
CTTGTGCTCATGTAGTCTTCGATACATTCTCCTTCAAAATCACCTTGCCG
CCATCCTCCAAGCGCCTGGAATTCTGCATCTGCTATCGCACCAACGAAAC
AGAATATTGGGATAATAATGATGGTAAAAACTACACCATTAGCAAGCGAT
CGCCCTTTTATTACAACGCCTTGTCGCCCTATGATAAGGGTCAGAATCGC
AACTCGAGCCAGCAAATAAGGTCCACCCTGACCGATGCCTTGGCCAAGGT
GCAAGACCAAAATGGCTGGCACCAGGAGCCACATACGCCATATTGGTGAA
ATCGCCTGGGAACGGGATTGGATTTTCCTGACCCAAGCGATTGAATAAAG
TTTCTCATTTAGGCCACATGAACAGAAAGAAACAGAATTGGAAAAGATTT
AAAGTGTTATAATCAGTTTCATTGACAGAGGGAGAGTCCAAAAGATTTTA
CCACTAACGAAACTTTTTGACCTAAGCTAATACCCGGTACAAATATCCCA
ATTTTAATGTGCCATTGACTTGAGGTTTACTCAATATAAAATGAGATAGG
AGGGCTTATAACTACTTCTACTGAGCGAAGCCCGAATTTGTATGTCTTGT
CTTTAGTCAACTTGATGGAATTTCAAAATCTATGTATAACTTTTTAAAAT
GTTTTATGTTTGACTGTAAAGAATTTTTGGAAAAGATAGATTTATATGTT
TACCTGTATGCCTGTGTGATCGTCTACATCTATATAACTGATACTAGATT
TATGTTAACTAAAAACGAAAAAAAAAACCTTATAAAAATGAAAGGAGATG
AATTTTGAGGCGTGAAGCATTCAAGCAAACCATTGTTTCGAAATTTACTG
CAACTGCAAAATAAAGAAAACAAAAACCAAAAAAAAAAAAAAAA

RE56341.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9238.a 2719 CG9238.a 38..2121 2..2085 10405 99.9 Plus
CG9238-RA 2121 CG9238-RA 38..2121 2..2085 10405 99.9 Plus
CG9238.b 2881 CG9238.b 635..2283 437..2085 8230 99.9 Plus
CG9238.b 2881 CG9238.b 38..472 2..436 2175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14531649..14532404 2078..1323 3765 99.9 Minus
chr3L 24539361 chr3L 14540646..14541080 436..2 2175 100 Minus
chr3L 24539361 chr3L 14537231..14537597 802..436 1820 99.7 Minus
chr3L 24539361 chr3L 14532463..14532778 1323..1008 1580 100 Minus
chr3L 24539361 chr3L 14532842..14533050 1009..801 1045 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:04:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14541533..14542295 2085..1323 3800 99.9 Minus
3L 28110227 3L 14550537..14550971 436..2 2175 100 Minus
3L 28110227 3L 14547117..14547483 802..436 1835 100 Minus
3L 28110227 3L 14542354..14542669 1323..1008 1580 100 Minus
3L 28110227 3L 14542733..14542941 1009..801 1045 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14534633..14535395 2085..1323 3800 99.8 Minus
3L 28103327 3L 14543637..14544071 436..2 2175 100 Minus
3L 28103327 3L 14540217..14540583 802..436 1835 100 Minus
3L 28103327 3L 14535454..14535769 1323..1008 1580 100 Minus
3L 28103327 3L 14535833..14536041 1009..801 1045 100 Minus
Blast to na_te.dros performed 2019-03-16 20:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Vege 884 Dwil\Vege VEGE 884bp Derived from AF518730. 790..851 2016..2075 125 69.4 Plus

RE56341.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:20:37 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14531670..14532404 1323..2057 99 <- Minus
chr3L 14532464..14532776 1010..1322 100 <- Minus
chr3L 14532842..14533048 803..1009 100 <- Minus
chr3L 14537231..14537596 437..802 99 <- Minus
chr3L 14540646..14541080 1..436 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:24:54 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RB 91..1155 433..1499 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:13:22 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RB 91..1155 433..1499 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:30 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RB 91..1155 433..1499 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:45 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RB 91..1155 433..1499 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:12 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
Gbs-70E-RB 91..1155 433..1499 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:45:44 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RA 1..2056 2..2057 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:13:21 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RA 1..2056 2..2057 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:30 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RA 4..2060 1..2057 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:45 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9238-RA 1..2056 2..2057 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:12 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
Gbs-70E-RA 4..2060 1..2057 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:37 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14541561..14542295 1323..2057 100 <- Minus
3L 14542355..14542667 1010..1322 100 <- Minus
3L 14542733..14542939 803..1009 100 <- Minus
3L 14547117..14547482 437..802 100 <- Minus
3L 14550537..14550971 1..436 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:37 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14541561..14542295 1323..2057 100 <- Minus
3L 14542355..14542667 1010..1322 100 <- Minus
3L 14542733..14542939 803..1009 100 <- Minus
3L 14547117..14547482 437..802 100 <- Minus
3L 14550537..14550971 1..436 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:37 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14541561..14542295 1323..2057 100 <- Minus
3L 14542355..14542667 1010..1322 100 <- Minus
3L 14542733..14542939 803..1009 100 <- Minus
3L 14547117..14547482 437..802 100 <- Minus
3L 14550537..14550971 1..436 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:30 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14535455..14535767 1010..1322 100 <- Minus
arm_3L 14535833..14536039 803..1009 100 <- Minus
arm_3L 14534661..14535395 1323..2057 100 <- Minus
arm_3L 14540217..14540582 437..802 100 <- Minus
arm_3L 14543637..14544071 1..436 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:13 Download gff for RE56341.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14534661..14535395 1323..2057 100 <- Minus
3L 14535455..14535767 1010..1322 100 <- Minus
3L 14535833..14536039 803..1009 100 <- Minus
3L 14540217..14540582 437..802 100 <- Minus
3L 14543637..14544071 1..436 99   Minus

RE56341.hyp Sequence

Translation from 506 to 1498

> RE56341.hyp
MVNNASAAVQGQGPSQQKAGATPLGVGSRSGRSYLERMASAPLLTNQPKS
CLSRKSCLHKSQNTTASSADLSPTDTDVADSASHSCICSKDSDSNGEVSR
GPKKHVIFADDEGLSLTEVRVMSEPSNVPPYWSMKFLEQITQGLVSPHPP
DQWTVDFKQPASDYLSFRQKIERDFVSLENVIVKDEESIVVGTIKVKNID
FQKEIIVRVTWDDWKSQQDIFCTYARAYGPATCAHVVFDTFSFKITLPPS
SKRLEFCICYRTNETEYWDNNDGKNYTISKRSPFYYNALSPYDKGQNRNS
SQQIRSTLTDALAKVQDQNGWHQEPHTPYW*

RE56341.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Gbs-70E-PA 330 CG9238-PA 1..330 1..330 1761 100 Plus
Gbs-70E-PC 384 CG9238-PC 55..384 1..330 1761 100 Plus
Gbs-70E-PB 384 CG9238-PB 55..384 1..330 1761 100 Plus
Gbs-76A-PD 681 CG9619-PD 454..629 101..276 175 28.9 Plus
Gbs-76A-PC 681 CG9619-PC 454..629 101..276 175 28.9 Plus

RE56341.pep Sequence

Translation from 506 to 1498

> RE56341.pep
MVNNASAAVQGQGPSQQKAGATPLGVGSRSGRSYLERMASAPLLTNQPKS
CLSRKSCLHKSQNTTASSADLSPTDTDVADSASHSCICSKDSDSNGEVSR
GPKKHVIFADDEGLSLTEVRVMSEPSNVPPYWSMKFLEQITQGLVSPHPP
DQWTVDFKQPASDYLSFRQKIERDFVSLENVIVKDEESIVVGTIKVKNID
FQKEIIVRVTWDDWKSQQDIFCTYARAYGPATCAHVVFDTFSFKITLPPS
SKRLEFCICYRTNETEYWDNNDGKNYTISKRSPFYYNALSPYDKGQNRNS
SQQIRSTLTDALAKVQDQNGWHQEPHTPYW*

RE56341.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25195-PA 393 GF25195-PA 57..393 1..330 1564 88.7 Plus
Dana\GF10772-PA 647 GF10772-PA 419..594 101..276 190 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13723-PA 384 GG13723-PA 55..384 1..330 1763 98.8 Plus
Dere\GG13414-PA 685 GG13414-PA 458..633 101..276 183 28.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16807-PA 379 GH16807-PA 56..379 1..330 1317 78 Plus
Dgri\GH14417-PA 595 GH14417-PA 371..546 101..276 187 28.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Gbs-70E-PC 384 CG9238-PC 55..384 1..330 1761 100 Plus
Gbs-70E-PB 384 CG9238-PB 55..384 1..330 1761 100 Plus
Gbs-70E-PA 330 CG9238-PA 1..330 1..330 1761 100 Plus
Gbs-76A-PD 681 CG9619-PD 454..629 101..276 175 28.9 Plus
Gbs-76A-PC 681 CG9619-PC 454..629 101..276 175 28.9 Plus
Gbs-76A-PB 681 CG9619-PB 454..629 101..276 175 28.9 Plus
Gbs-76A-PA 681 CG9619-PA 454..629 101..276 175 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13819-PA 380 GI13819-PA 56..380 1..330 1413 81.8 Plus
Dmoj\GI13546-PA 576 GI13546-PA 354..529 101..276 191 29.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20988-PA 383 GL20988-PA 55..383 1..330 1511 85.3 Plus
Dper\GL20910-PA 655 GL20910-PA 432..606 101..276 179 27.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21633-PA 383 GA21633-PA 55..383 1..330 1511 85.3 Plus
Dpse\GA21917-PA 656 GA21917-PA 432..607 101..276 184 28.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24544-PA 384 GM24544-PA 55..384 1..330 1763 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12617-PA 384 GD12617-PA 55..384 1..330 1778 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11686-PA 385 GJ11686-PA 56..385 1..330 1415 81.9 Plus
Dvir\GJ11905-PA 563 GJ11905-PA 341..516 101..276 187 29.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20414-PA 419 GK20414-PA 55..419 1..330 1380 74.5 Plus
Dwil\GK19640-PA 641 GK19640-PA 322..577 36..276 195 26 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20018-PA 383 GE20018-PA 55..383 1..330 1737 97.9 Plus
Dyak\GE22922-PA 683 GE22922-PA 456..631 101..276 185 28.9 Plus