BDGP Sequence Production Resources |
Search the DGRC for RE56801
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 568 |
Well: | 1 |
Vector: | pFlc-1 |
Associated Gene/Transcript | TfIIFbeta-RA |
Protein status: | RE56801.pep: gold |
Preliminary Size: | 1262 |
Sequenced Size: | 1103 |
Gene | Date | Evidence |
---|---|---|
CG6538 | 2001-12-14 | Blastp of sequenced clone |
CG6538 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6538 | 2003-01-01 | Sim4 clustering to Release 3 |
TfIIFbeta | 2008-04-29 | Release 5.5 accounting |
TfIIFbeta | 2008-08-15 | Release 5.9 accounting |
TfIIFbeta | 2008-12-18 | 5.12 accounting |
1103 bp (1103 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071514
> RE56801.complete AACAACAACAAGCAAAGCCGAAAACGGTACAAGTGGCTTTGCAAATTCGT TTTTAATAATTTAAAGCAAACAGAATGTCGAAGGAGGATAAGGAAAAGAC ACAGATCATCGACAAGGACCTGGACCTGTCCAATGCTGGGCGAGGCGTAT GGCTGGTGAAGGTGCCCAAGTACATTGCCCAGAAATGGGAGAAGGCGCCG ACGAACATGGACGTGGGCAAGCTCCGGATAAACAAGACACCTGGCCAAAA GGCCCAGGTCTCGCTTTCCCTCACGCCCGCCGTTTTGGCTCTAGATCCCG AGGAGAAAATACCCACCGAGCACATCCTGGACGTGTCGCAGGTCACCAAG CAGACGCTCGGCGTATTCTCGCACATGGCACCGTCCGATGGCAAGGAGAA CTCGACTACCTCGGCGGCACAGCCGGATAACGAAAAGTTGTATATGGAGG GCAGGATTGTGCAAAAGCTAGAGTGCCGACCCATCGCCGACAACTGCTAC ATGAAACTAAAGCTGGAGTCCATACGCAAGGCATCGGAACCACAGCGACG TGTGCAGCCTATCGACAAAATCGTGCAGAACTTTAAGCCTGTAAAAGACC ACGCACACAACATTGAATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAG GCGCGCGACGACAAGAATGCCGTGATGGATATGCTCTTCCACGCATTCGA GAAGCATCAATACTATAACATCAAGGATCTGGTCAAGATCACCAACCAGC CGATTAGCTACCTGAAGGAGATTCTCAAGGATGTCTGCGATTACAATATG AAGAACCCGCACAAGAACATGTGGGAGCTCAAGAAAGAATATCGCCACTA CAAGACTGAAGAGAAGAAAGAGGAGGAGCACAAGTCAGGCAGCAGCGACT CGGAGTAGCATTGGGAGAATCGCCGACTTACTTTCATTAAAACACATTAA GTAATTGCATGGTTCCGTTTTATTCCTTAAGAACTACACGTTATACTTAC GAAAAAAACATTATATCTTAAAATGATTGTAAATAGACACTAGCTTGCAC TCTGGTAAATACATACGTATATATACACTTTATCCTCAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfIIFbeta-RA | 1452 | TfIIFbeta-RA | 212..1297 | 1..1086 | 5430 | 100 | Plus |
Cap-H2-RF | 4149 | Cap-H2-RF | 4004..4149 | 1086..941 | 730 | 100 | Minus |
Cap-H2.d | 4158 | Cap-H2.d | 4013..4158 | 1086..941 | 730 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6592141..6592616 | 612..1087 | 99 | <- | Minus |
chr3R | 6592682..6593292 | 1..611 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIFbeta-RA | 1..834 | 75..908 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIFbeta-RA | 1..834 | 75..908 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIFbeta-RA | 1..834 | 75..908 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIFbeta-RA | 1..834 | 75..908 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIFbeta-RA | 1..834 | 75..908 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIFbeta-RA | 174..1259 | 1..1087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIFbeta-RA | 174..1259 | 1..1087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIFbeta-RA | 32..1117 | 1..1087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIFbeta-RA | 174..1259 | 1..1087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TfIIFbeta-RA | 32..1117 | 1..1087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10766622..10767097 | 612..1087 | 99 | <- | Minus |
3R | 10767163..10767773 | 1..611 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10766622..10767097 | 612..1087 | 99 | <- | Minus |
3R | 10767163..10767773 | 1..611 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10766622..10767097 | 612..1087 | 99 | <- | Minus |
3R | 10767163..10767773 | 1..611 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6592344..6592819 | 612..1087 | 99 | <- | Minus |
arm_3R | 6592885..6593495 | 1..611 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10507453..10507928 | 612..1087 | 99 | <- | Minus |
3R | 10507994..10508604 | 1..611 | 100 | Minus |
Translation from 74 to 907
> RE56801.pep MSKEDKEKTQIIDKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKL RINKTPGQKAQVSLSLTPAVLALDPEEKIPTEHILDVSQVTKQTLGVFSH MAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLECRPIADNCYMKLKLESI RKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKARDDKNAV MDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMW ELKKEYRHYKTEEKKEEEHKSGSSDSE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17437-PA | 281 | GF17437-PA | 1..281 | 1..277 | 1316 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17267-PA | 277 | GG17267-PA | 1..277 | 1..277 | 1468 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14638-PA | 287 | GH14638-PA | 1..287 | 1..277 | 1344 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfIIFbeta-PA | 277 | CG6538-PA | 1..277 | 1..277 | 1453 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23671-PA | 288 | GI23671-PA | 1..288 | 1..277 | 1313 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12621-PA | 282 | GL12621-PA | 1..282 | 1..277 | 1322 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19669-PA | 282 | GA19669-PA | 1..282 | 1..277 | 1322 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26151-PA | 277 | GM26151-PA | 1..277 | 1..277 | 1455 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20705-PA | 277 | GD20705-PA | 1..277 | 1..277 | 1468 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23231-PA | 286 | GJ23231-PA | 1..286 | 1..277 | 1336 | 88.8 | Plus |
Dvir\GJ21374-PA | 247 | GJ21374-PA | 1..243 | 1..263 | 499 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13842-PA | 280 | GK13842-PA | 1..260 | 1..259 | 1240 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24669-PA | 277 | GE24669-PA | 1..277 | 1..277 | 1461 | 98.2 | Plus |
Translation from 74 to 907
> RE56801.hyp MSKEDKEKTQIIDKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKL RINKTPGQKAQVSLSLTPAVLALDPEEKIPTEHILDVSQVTKQTLGVFSH MAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLECRPIADNCYMKLKLESI RKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKARDDKNAV MDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMW ELKKEYRHYKTEEKKEEEHKSGSSDSE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TfIIFbeta-PA | 277 | CG6538-PA | 1..277 | 1..277 | 1453 | 100 | Plus |