BDGP Sequence Production Resources |
Search the DGRC for RE56869
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 568 |
Well: | 69 |
Vector: | pFlc-1 |
Associated Gene/Transcript | U2A-RA |
Protein status: | RE56869.pep: gold |
Preliminary Size: | 888 |
Sequenced Size: | 1007 |
Gene | Date | Evidence |
---|---|---|
CG1406 | 2001-12-14 | Blastp of sequenced clone |
CG1406 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1406 | 2003-01-01 | Sim4 clustering to Release 3 |
U2A | 2008-04-29 | Release 5.5 accounting |
U2A | 2008-08-15 | Release 5.9 accounting |
U2A | 2008-12-18 | 5.12 accounting |
1007 bp (1007 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071516
> RE56869.complete GTTCATCGCCAACTCGCGTCGGCAGCGAATTGTTTTTCTGCATTTCGGAA AATAAGCTTCAAAAGAGTATAAAAAGACCGAGTAAAGACCAAACGTAAGC ATACTATAACTGCCAAGATGGTGAAACTAACGCCGGAGCTGATAAACCAG TCGATGCAATACATAAACCCATGCCGGGAGCGCGAGCTGGATTTGCGCGG CTATAAGATTCCACAAATCGAGAACCTGGGCGCAACTCTGGACCAGTTTG ATACCATCGACTTGTCCGACAACGATCTGCGCAAGCTGGACAACCTGCCG CATCTGCCGCGCCTCAAGTGCCTGCTGCTGAACAACAACCGCATCCTGCG CATCAGCGAAGGGCTGGAGGAGGCGGTGCCCAACCTGGGCTCCATCATTC TCACCGGCAACAACCTGCAGGAGCTGAGCGACTTAGAGCCCCTGGTCGGA TTCACCAAGCTGGAAACCATCTGCCTGCTTATCAACCCGGTATCCACGAA GCCCAACTACCGCGAGTACATGGCCTACAAGTTCCCGCAGCTGCGGCTAC TCGACTTCAGGAAGATCAAGCAGAAGGACCGCCAGGCGGCGCAGGAGTTC TTCCGCACCAAGCAGGGCAAGGACGTGCTAAAGGAGATTAGCCGGAAGTC CAAGATGAGCGCCGCAGCCGCCATAGCTGCAGAGGCGGGGAATGGCAAGG GAAGGGGATCGGAAGGCGGACGACTGGCCAATCCGCAGGACATGCAGCGC ATCCGCGAGGCCATCAAGCGGGCCAGCTCTCTGGCAGAGGTGGAGCGTCT ATCGCAGATCCTGCAAAGCGGCCAGCTGCCGGATAAGTTTCAGCACGAGA TGGAGGCGGTGGCACAGAACGGGGCGGGGCACAACGGTTCGGGGGCCGTG GCCATGGAATACTAGGACTAGAATTATCCGCTCATCTGTCAGCTACCTTA TAACCGTAGACCAATATTTTTTAATAAAACACCAAAAGTCGAAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3562671..3563659 | 989..1 | 4930 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7675364..7676352 | 989..1 | 4930 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7676563..7677551 | 989..1 | 4930 | 99.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3562669..3563659 | 1..991 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2A-RA | 1..798 | 118..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2A-RA | 1..798 | 118..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2A-RA | 1..798 | 118..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2A-RA | 1..798 | 118..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2A-RA | 1..798 | 118..915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2A-RA | 1..991 | 1..991 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2A-RA | 1..991 | 1..991 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2A-RA | 11..1001 | 1..991 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2A-RA | 1..991 | 1..991 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
U2A-RA | 11..1001 | 1..991 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7675362..7676352 | 1..991 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7675362..7676352 | 1..991 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7675362..7676352 | 1..991 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3562867..3563857 | 1..991 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7676561..7677551 | 1..991 | 99 | Minus |
Translation from 117 to 914
> RE56869.pep MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLS DNDLRKLDNLPHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNL QELSDLEPLVGFTKLETICLLINPVSTKPNYREYMAYKFPQLRLLDFRKI KQKDRQAAQEFFRTKQGKDVLKEISRKSKMSAAAAIAAEAGNGKGRGSEG GRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLPDKFQHEMEAVAQ NGAGHNGSGAVAMEY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11700-PA | 268 | GF11700-PA | 1..268 | 1..265 | 1212 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10720-PA | 265 | GG10720-PA | 1..265 | 1..265 | 1354 | 96.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20014-PA | 264 | GH20014-PA | 1..264 | 1..265 | 1121 | 85.5 | Plus |
Dgri\GH17707-PA | 390 | GH17707-PA | 1..162 | 1..162 | 148 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
U2A-PA | 265 | CG1406-PA | 1..265 | 1..265 | 1341 | 100 | Plus |
tilB-PA | 395 | CG14620-PA | 1..232 | 1..222 | 153 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19193-PA | 262 | GI19193-PA | 1..262 | 1..265 | 1136 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11538-PA | 264 | GL11538-PA | 1..264 | 1..265 | 1161 | 88.7 | Plus |
Dper\GL13315-PA | 393 | GL13315-PA | 1..159 | 1..159 | 161 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12730-PA | 264 | GA12730-PA | 1..264 | 1..265 | 1161 | 88.7 | Plus |
Dpse\GA22833-PA | 393 | GA22833-PA | 1..159 | 1..159 | 161 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20768-PA | 265 | GM20768-PA | 1..265 | 1..265 | 1365 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10229-PA | 265 | GD10229-PA | 1..265 | 1..265 | 1373 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20260-PA | 262 | GJ20260-PA | 1..262 | 1..265 | 1152 | 86.8 | Plus |
Dvir\GJ19165-PA | 390 | GJ19165-PA | 1..162 | 1..162 | 149 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19667-PA | 264 | GK19667-PA | 1..264 | 1..265 | 1086 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23717-PA | 265 | GE23717-PA | 1..265 | 1..265 | 1367 | 97.7 | Plus |
Translation from 117 to 914
> RE56869.hyp MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLS DNDLRKLDNLPHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNL QELSDLEPLVGFTKLETICLLINPVSTKPNYREYMAYKFPQLRLLDFRKI KQKDRQAAQEFFRTKQGKDVLKEISRKSKMSAAAAIAAEAGNGKGRGSEG GRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLPDKFQHEMEAVAQ NGAGHNGSGAVAMEY*