Clone RE56869 Report

Search the DGRC for RE56869

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:568
Well:69
Vector:pFlc-1
Associated Gene/TranscriptU2A-RA
Protein status:RE56869.pep: gold
Preliminary Size:888
Sequenced Size:1007

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1406 2001-12-14 Blastp of sequenced clone
CG1406 2002-01-01 Sim4 clustering to Release 2
CG1406 2003-01-01 Sim4 clustering to Release 3
U2A 2008-04-29 Release 5.5 accounting
U2A 2008-08-15 Release 5.9 accounting
U2A 2008-12-18 5.12 accounting

Clone Sequence Records

RE56869.complete Sequence

1007 bp (1007 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071516

> RE56869.complete
GTTCATCGCCAACTCGCGTCGGCAGCGAATTGTTTTTCTGCATTTCGGAA
AATAAGCTTCAAAAGAGTATAAAAAGACCGAGTAAAGACCAAACGTAAGC
ATACTATAACTGCCAAGATGGTGAAACTAACGCCGGAGCTGATAAACCAG
TCGATGCAATACATAAACCCATGCCGGGAGCGCGAGCTGGATTTGCGCGG
CTATAAGATTCCACAAATCGAGAACCTGGGCGCAACTCTGGACCAGTTTG
ATACCATCGACTTGTCCGACAACGATCTGCGCAAGCTGGACAACCTGCCG
CATCTGCCGCGCCTCAAGTGCCTGCTGCTGAACAACAACCGCATCCTGCG
CATCAGCGAAGGGCTGGAGGAGGCGGTGCCCAACCTGGGCTCCATCATTC
TCACCGGCAACAACCTGCAGGAGCTGAGCGACTTAGAGCCCCTGGTCGGA
TTCACCAAGCTGGAAACCATCTGCCTGCTTATCAACCCGGTATCCACGAA
GCCCAACTACCGCGAGTACATGGCCTACAAGTTCCCGCAGCTGCGGCTAC
TCGACTTCAGGAAGATCAAGCAGAAGGACCGCCAGGCGGCGCAGGAGTTC
TTCCGCACCAAGCAGGGCAAGGACGTGCTAAAGGAGATTAGCCGGAAGTC
CAAGATGAGCGCCGCAGCCGCCATAGCTGCAGAGGCGGGGAATGGCAAGG
GAAGGGGATCGGAAGGCGGACGACTGGCCAATCCGCAGGACATGCAGCGC
ATCCGCGAGGCCATCAAGCGGGCCAGCTCTCTGGCAGAGGTGGAGCGTCT
ATCGCAGATCCTGCAAAGCGGCCAGCTGCCGGATAAGTTTCAGCACGAGA
TGGAGGCGGTGGCACAGAACGGGGCGGGGCACAACGGTTCGGGGGCCGTG
GCCATGGAATACTAGGACTAGAATTATCCGCTCATCTGTCAGCTACCTTA
TAACCGTAGACCAATATTTTTTAATAAAACACCAAAAGTCGAAAAAAAAA
AAAAAAA

RE56869.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
U2A-RA 991 U2A-RA 1..989 1..989 4930 99.8 Plus
CG12107-RA 880 CG12107-RA 789..880 989..898 460 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3562671..3563659 989..1 4930 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:04:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7675364..7676352 989..1 4930 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7676563..7677551 989..1 4930 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 12:39:47 has no hits.

RE56869.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:40:41 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3562669..3563659 1..991 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:15 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
U2A-RA 1..798 118..915 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:20 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
U2A-RA 1..798 118..915 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:39:29 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
U2A-RA 1..798 118..915 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:38 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
U2A-RA 1..798 118..915 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:31 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
U2A-RA 1..798 118..915 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:37:18 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
U2A-RA 1..991 1..991 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:20 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
U2A-RA 1..991 1..991 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:39:29 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
U2A-RA 11..1001 1..991 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:38 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
U2A-RA 1..991 1..991 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:31 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
U2A-RA 11..1001 1..991 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:41 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7675362..7676352 1..991 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:41 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7675362..7676352 1..991 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:41 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7675362..7676352 1..991 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:39:29 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3562867..3563857 1..991 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:32 Download gff for RE56869.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7676561..7677551 1..991 99   Minus

RE56869.pep Sequence

Translation from 117 to 914

> RE56869.pep
MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLS
DNDLRKLDNLPHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNL
QELSDLEPLVGFTKLETICLLINPVSTKPNYREYMAYKFPQLRLLDFRKI
KQKDRQAAQEFFRTKQGKDVLKEISRKSKMSAAAAIAAEAGNGKGRGSEG
GRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLPDKFQHEMEAVAQ
NGAGHNGSGAVAMEY*

RE56869.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11700-PA 268 GF11700-PA 1..268 1..265 1212 90.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10720-PA 265 GG10720-PA 1..265 1..265 1354 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20014-PA 264 GH20014-PA 1..264 1..265 1121 85.5 Plus
Dgri\GH17707-PA 390 GH17707-PA 1..162 1..162 148 32.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
U2A-PA 265 CG1406-PA 1..265 1..265 1341 100 Plus
tilB-PA 395 CG14620-PA 1..232 1..222 153 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19193-PA 262 GI19193-PA 1..262 1..265 1136 88.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11538-PA 264 GL11538-PA 1..264 1..265 1161 88.7 Plus
Dper\GL13315-PA 393 GL13315-PA 1..159 1..159 161 32.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12730-PA 264 GA12730-PA 1..264 1..265 1161 88.7 Plus
Dpse\GA22833-PA 393 GA22833-PA 1..159 1..159 161 32.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20768-PA 265 GM20768-PA 1..265 1..265 1365 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10229-PA 265 GD10229-PA 1..265 1..265 1373 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20260-PA 262 GJ20260-PA 1..262 1..265 1152 86.8 Plus
Dvir\GJ19165-PA 390 GJ19165-PA 1..162 1..162 149 31.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19667-PA 264 GK19667-PA 1..264 1..265 1086 82 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23717-PA 265 GE23717-PA 1..265 1..265 1367 97.7 Plus

RE56869.hyp Sequence

Translation from 117 to 914

> RE56869.hyp
MVKLTPELINQSMQYINPCRERELDLRGYKIPQIENLGATLDQFDTIDLS
DNDLRKLDNLPHLPRLKCLLLNNNRILRISEGLEEAVPNLGSIILTGNNL
QELSDLEPLVGFTKLETICLLINPVSTKPNYREYMAYKFPQLRLLDFRKI
KQKDRQAAQEFFRTKQGKDVLKEISRKSKMSAAAAIAAEAGNGKGRGSEG
GRLANPQDMQRIREAIKRASSLAEVERLSQILQSGQLPDKFQHEMEAVAQ
NGAGHNGSGAVAMEY*

RE56869.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
U2A-PA 265 CG1406-PA 1..265 1..265 1341 100 Plus
tilB-PA 395 CG14620-PA 1..232 1..222 153 28.6 Plus