Clone RE57116 Report

Search the DGRC for RE57116

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:571
Well:16
Vector:pFlc-1
Associated Gene/TranscriptCpr67Fa1-RA
Protein status:RE57116.pep: gold
Preliminary Size:405
Sequenced Size:565

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7941 2002-01-01 Sim4 clustering to Release 2
CG7941 2003-01-01 Sim4 clustering to Release 3
Cpr67Fa1 2008-04-29 Release 5.5 accounting
Cpr67Fa1 2008-08-15 Release 5.9 accounting
Cpr67Fa1 2008-12-18 5.12 accounting

Clone Sequence Records

RE57116.complete Sequence

565 bp (565 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071520.1

> RE57116.complete
GGCCATTCAGAGTCGTCTCTCAGTTTAGACAAACGCACTCCAAGCCAGCA
AAGATGTTCCGCTACCTGCTCGTCGCCTCCGCTATCCTGGCCTGCGCCTA
CGGTGCCGCCACCTACAACCAGGAAGCTGGTGCCTACATCACAAAGATCG
GTTCCGACATCCAGCCCGAGGGCAACTACAACTACCAATACGAGACCAGC
AACGGCATCGCCGCCCAGGAGTCCGGAATTGGAGGAAACCACGCCAACGG
AGGCTTCTCGTGGTACTCGCCCGAGGGTGAGCTCGTCCAGATCTCGTACG
TGGCCGACGAGAACGGTTACCAGCCCCAGGGAGCTCTCCTGCCCACTCCT
CCTCCAATCCCAGCTGCCATCCTTAGGAGCTTGGAGTACATCCGCACCCA
TCCCCAATACGTCGAGCAGGAGTACCGCAGGCCCGCCCTCAGGAAGGTCT
TTGGTTAAGCGGGAGCGGAAGTCTTATGTGATAACATTTTAAAAGAGCTT
TATTACGATTTAAAAAATGTTTTAAAATAAAGAAGAAAAAAATTACATGA
AAAAAAAAAAAAAAA

RE57116.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fa1-RA 666 Cpr67Fa1-RA 74..619 3..548 2715 99.8 Plus
Cpr67Fa2-RA 536 Cpr67Fa2-RA 10..430 38..458 1820 95.4 Plus
Lcp4-RA 690 Lcp4-RA 264..335 302..373 255 90.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 10881268..10881750 66..548 2385 99.6 Plus
chr3L 24539361 chr3L 10883067..10883458 67..458 1750 96.4 Plus
chr3L 24539361 chr3L 10881048..10881110 3..65 300 98.4 Plus
chr2R 21145070 chr2R 4325503..4325574 302..373 255 90.3 Plus
chr2R 21145070 chr2R 4323295..4323366 302..373 240 88.9 Plus
chr3L 24539361 chr3L 7085869..7085936 339..406 205 86.8 Plus
chr2R 21145070 chr2R 4318334..4318439 371..266 200 79.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:04:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10890218..10890700 66..548 2400 99.8 Plus
3L 28110227 3L 10892019..10892410 67..458 1750 96.4 Plus
3L 28110227 3L 10889998..10890060 3..65 315 100 Plus
2R 25286936 2R 8437977..8438048 302..373 255 90.3 Plus
2R 25286936 2R 8435769..8435840 302..373 240 88.9 Plus
3L 28110227 3L 7093638..7093705 339..406 205 86.8 Plus
2R 25286936 2R 8430808..8430913 371..266 200 79.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 10883318..10883800 66..548 2400 99.7 Plus
3L 28103327 3L 10885119..10885510 67..458 1750 96.4 Plus
3L 28103327 3L 10883098..10883160 3..65 315 100 Plus
2R 25260384 2R 8439176..8439247 302..373 255 90.2 Plus
2R 25260384 2R 8436968..8437039 302..373 240 88.8 Plus
3L 28103327 3L 7086738..7086805 339..406 205 86.7 Plus
Blast to na_te.dros performed on 2019-03-16 14:42:36 has no hits.

RE57116.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:43:40 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 10881046..10881110 1..65 95 -> Plus
chr3L 10881268..10881750 66..549 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:21 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa1-RA 1..405 54..458 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:48 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa1-RA 1..405 54..458 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:41:46 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa1-RA 1..405 54..458 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:59 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa1-RA 1..405 54..458 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:31:26 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa1-RA 1..405 54..458 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:43:38 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa1-RA 3..548 3..549 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:48 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa1-RA 2..527 3..528 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:41:46 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa1-RA 7..534 1..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:37:00 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa1-RA 3..548 3..549 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:26 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fa1-RA 7..534 1..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:43:40 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10889996..10890060 1..65 96 -> Plus
3L 10890218..10890700 66..549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:43:40 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10889996..10890060 1..65 96 -> Plus
3L 10890218..10890700 66..549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:43:40 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10889996..10890060 1..65 96 -> Plus
3L 10890218..10890700 66..549 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:41:46 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10883096..10883160 1..65 96 -> Plus
arm_3L 10883318..10883800 66..549 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:14:31 Download gff for RE57116.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10883318..10883800 66..549 99   Plus
3L 10883096..10883160 1..65 96 -> Plus

RE57116.hyp Sequence

Translation from 0 to 491

> RE57116.hyp
HHSESSLSLDKRTPSQQRCSATCSSPPLSWPAPTVPPPTTRKLVPTSPRS
VPTSSPRATTTTNTRPATASPPRSPELEETTPTEASRGTRPRVSSSRSRT
WPTRTVTSPRELSCPLLLQSQLPSLGAWSTSAPIPNTSSRSTAGPPSGRS
LVKRERKSYVITF*

RE57116.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Sgs1-PA 1286 CG3047-PA 351..491 13..145 152 34.2 Plus

RE57116.pep Sequence

Translation from 2 to 457

> RE57116.pep
PFRVVSQFRQTHSKPAKMFRYLLVASAILACAYGAATYNQEAGAYITKIG
SDIQPEGNYNYQYETSNGIAAQESGIGGNHANGGFSWYSPEGELVQISYV
ADENGYQPQGALLPTPPPIPAAILRSLEYIRTHPQYVEQEYRRPALRKVF
G*

RE57116.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10615-PA 140 GF10615-PA 1..131 18..148 424 76.3 Plus
Dana\GF10616-PA 140 GF10616-PA 1..131 18..148 416 75.6 Plus
Dana\GF24793-PA 181 GF24793-PA 2..128 16..141 300 47.2 Plus
Dana\GF10617-PA 121 GF10617-PA 1..114 18..134 295 49.6 Plus
Dana\GF10274-PA 119 GF10274-PA 26..116 44..134 282 64.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15456-PA 134 GG15456-PA 1..134 18..151 577 88.1 Plus
Dere\GG15458-PA 134 GG15458-PA 1..134 18..151 574 87.3 Plus
Dere\GG14999-PA 178 GG14999-PA 2..121 16..134 307 50.8 Plus
Dere\GG15459-PA 122 GG15459-PA 1..122 18..148 271 42.7 Plus
Dere\GG13245-PA 121 GG13245-PA 1..113 18..134 268 50 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15388-PA 153 GH15388-PA 1..119 18..138 382 71.3 Plus
Dgri\GH16084-PA 157 GH16084-PA 1..121 18..134 297 50.4 Plus
Dgri\GH15387-PA 126 GH15387-PA 1..116 19..135 288 57.3 Plus
Dgri\GH20994-PA 124 GH20994-PA 1..124 18..141 265 44.8 Plus
Dgri\GH15299-PA 118 GH15299-PA 1..118 18..137 264 45.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fa1-PA 134 CG7941-PA 1..134 18..151 710 100 Plus
Cpr67Fa2-PA 134 CG18349-PA 1..134 18..151 704 97.8 Plus
Cpr65Ec-PA 127 CG8634-PA 4..117 19..135 335 53.8 Plus
Cpr65Eb-PA 179 CG8638-PA 8..122 22..135 312 52.2 Plus
Cpr67Fb-PA 122 CG18348-PA 1..114 18..134 296 50.4 Plus
Edg78E-PB 122 CG7673-PB 1..113 18..134 272 50 Plus
Edg78E-PA 122 CG7673-PA 1..113 18..134 272 50 Plus
Cpr78Cc-PA 119 CG7658-PA 8..116 23..134 264 53 Plus
Pcp-PA 184 CG3440-PA 8..124 23..141 257 46.3 Plus
Cpr65Ea-PA 127 CG8640-PA 1..112 18..134 255 47 Plus
Cpr49Ae-PA 134 CG8505-PA 2..129 17..134 254 44.2 Plus
Lcp2-PB 126 CG8697-PB 1..117 18..134 245 39 Plus
Lcp2-PA 126 CG8697-PA 1..117 18..134 245 39 Plus
Lcp4-PB 112 CG2044-PB 1..109 18..134 241 46.2 Plus
Lcp4-PA 112 CG2044-PA 1..109 18..134 241 46.2 Plus
Lcp1-PB 130 CG11650-PB 1..121 18..134 234 38.5 Plus
Lcp1-PA 130 CG11650-PA 1..121 18..134 234 38.5 Plus
Cpr49Aa-PB 144 CG30045-PB 3..129 19..134 234 40.9 Plus
Lcp3-PB 112 CG2043-PB 1..109 18..134 230 43.6 Plus
Lcp3-PA 112 CG2043-PA 1..109 18..134 230 43.6 Plus
Cpr65Az-PA 239 CG12330-PA 116..207 46..128 221 47.8 Plus
Cpr47Ef-PD 601 CG13214-PD 146..225 56..127 216 53.8 Plus
Cpr47Ef-PC 612 CG13214-PC 146..225 56..127 216 53.8 Plus
Cpr47Ea-PA 135 CG9079-PA 38..127 41..122 208 45.6 Plus
Cpr49Af-PB 126 CG8510-PB 27..118 51..134 202 41.3 Plus
Cpr49Af-PA 126 CG8510-PA 27..118 51..134 202 41.3 Plus
Cpr78Ca-PA 127 CG11310-PA 42..126 55..143 187 47.2 Plus
Cpr78Cb-PB 140 CG7663-PB 47..130 51..135 183 47.1 Plus
Cpr78Cb-PA 140 CG7663-PA 47..130 51..135 183 47.1 Plus
Cpr47Eg-PA 117 CG9070-PA 8..114 30..134 182 41.8 Plus
Cpr49Ah-PA 190 CG8515-PA 53..146 46..130 166 38.3 Plus
Lcp65Ad-PB 108 CG6955-PB 3..106 19..116 164 36.8 Plus
Lcp65Ad-PA 108 CG6955-PA 3..106 19..116 164 36.8 Plus
Cpr65Ax2-PB 102 CG18777-PB 2..100 20..117 157 36.8 Plus
Cpr65Ax2-PA 102 CG18777-PA 2..100 20..117 157 36.8 Plus
Cpr65Ax1-PA 102 CG34270-PA 2..100 20..117 157 36.8 Plus
Lcp65Af-PA 100 CG10533-PA 2..100 20..119 156 38 Plus
Lcp65Ac-PA 109 CG6956-PA 7..106 23..117 155 35.9 Plus
Lcp65Ag2-PA 105 CG10534-PA 2..103 20..117 153 35.8 Plus
Lcp65Ag1-PA 105 CG10530-PA 2..103 20..117 153 35.8 Plus
Cpr49Ab-PA 259 CG30042-PA 149..254 34..133 153 33.6 Plus
Lcp65Ag3-PA 105 CG18779-PA 2..103 20..117 150 34.9 Plus
Cpr11B-PB 195 CG2555-PB 58..155 34..122 148 32.7 Plus
Cpr11B-PA 197 CG2555-PA 58..155 34..122 148 32.7 Plus
Cpr65Av-PA 111 CG32405-PA 9..109 22..114 145 33.7 Plus
Cpr100A-PA 241 CG12045-PA 1..126 18..145 143 29.7 Plus
Lcp65Ab1-PA 104 CG32400-PA 2..102 20..117 142 36.4 Plus
Lcp65Ab2-PA 104 CG18773-PA 2..102 20..117 142 36.4 Plus
Cpr49Ac-PE 285 CG8502-PE 129..208 52..130 141 32.5 Plus
Lcp65Ae-PA 99 CG10529-PA 2..96 20..114 139 35.9 Plus
Acp65Aa-PA 105 CG10297-PA 1..104 18..114 138 30.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12994-PA 134 GI12994-PA 1..117 18..138 348 62.8 Plus
Dmoj\GI12346-PA 108 GI12346-PA 6..108 40..148 283 51.4 Plus
Dmoj\GI12347-PA 159 GI12347-PA 25..122 35..135 279 51.5 Plus
Dmoj\GI12993-PA 126 GI12993-PA 1..115 19..134 272 56 Plus
Dmoj\GI20906-PA 117 GI20906-PA 1..112 18..134 270 48.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21882-PA 147 GL21882-PA 1..117 18..134 375 80.3 Plus
Dper\GL25022-PA 129 GL25022-PA 4..124 19..143 288 58.4 Plus
Dper\GL24679-PA 120 GL24679-PA 1..116 18..134 285 48.7 Plus
Dper\GL11748-PA 122 GL11748-PA 1..114 18..134 284 47.9 Plus
Dper\GL24678-PA 119 GL24678-PA 1..116 18..134 273 47.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14900-PA 147 GA14900-PA 1..117 18..134 375 80.3 Plus
Dpse\GA21228-PA 183 GA21228-PA 22..126 28..135 313 53.7 Plus
Dpse\GA23698-PA 190 GA23698-PA 22..130 28..139 313 52.7 Plus
Dpse\GA20507-PA 120 GA20507-PA 1..116 18..134 284 48.7 Plus
Dpse\GA14899-PA 122 GA14899-PA 1..114 18..134 284 47.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25232-PA 134 GM25232-PA 1..134 18..151 594 94 Plus
Dsec\GM25233-PA 134 GM25233-PA 1..134 18..151 592 93.3 Plus
Dsec\GM13790-PA 179 GM13790-PA 2..122 16..135 306 50.4 Plus
Dsec\GM25234-PA 122 GM25234-PA 1..122 18..148 292 47.3 Plus
Dsec\GM22150-PA 122 GM22150-PA 1..113 18..134 267 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14265-PA 134 GD14265-PA 1..134 18..151 595 94 Plus
Dsim\GD14264-PA 134 GD14264-PA 1..134 18..151 586 93.3 Plus
Dsim\GD14266-PA 116 GD14266-PA 1..116 18..133 432 72.4 Plus
Dsim\GD13091-PA 179 GD13091-PA 2..122 16..135 307 50.4 Plus
Dsim\GD12126-PA 122 GD12126-PA 1..113 18..134 267 50 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13137-PA 139 GJ13137-PA 1..118 18..138 435 68.9 Plus
Dvir\GJ12238-PA 160 GJ12238-PA 1..122 18..135 293 45.6 Plus
Dvir\GJ20634-PA 126 GJ20634-PA 1..126 18..143 292 46.5 Plus
Dvir\GJ13136-PA 127 GJ13136-PA 1..117 18..135 284 55.9 Plus
Dvir\GJ20637-PA 117 GJ20637-PA 1..117 18..139 276 47.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17778-PA 140 GK17778-PA 1..120 18..139 362 67.7 Plus
Dwil\GK16649-PA 134 GK16649-PA 29..128 41..143 335 61.2 Plus
Dwil\GK17540-PA 191 GK17540-PA 1..123 18..135 319 52.8 Plus
Dwil\GK20466-PA 121 GK20466-PA 2..121 18..138 293 49.6 Plus
Dwil\GK17780-PA 112 GK17780-PA 11..104 41..134 257 52.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21769-PA 134 GE21769-PA 1..134 18..151 566 85.8 Plus
Dyak\GE21768-PA 134 GE21768-PA 1..134 18..151 496 87.3 Plus
Dyak\GE20445-PA 172 GE20445-PA 2..123 16..135 298 50.8 Plus
Dyak\GE21770-PA 122 GE21770-PA 1..114 18..134 293 51.3 Plus
Dyak\GE21591-PA 127 GE21591-PA 1..122 18..143 265 54 Plus