Clone RE57120 Report

Search the DGRC for RE57120

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:571
Well:20
Vector:pFlc-1
Associated Gene/TranscriptCG10465-RA
Protein status:RE57120.pep: gold
Preliminary Size:1104
Sequenced Size:1270

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10465 2001-12-14 Blastp of sequenced clone
CG10465 2002-01-01 Sim4 clustering to Release 2
CG10465 2003-01-01 Sim4 clustering to Release 3
CG10465 2008-04-29 Release 5.5 accounting
CG10465 2008-08-15 Release 5.9 accounting
CG10465 2008-12-18 5.12 accounting

Clone Sequence Records

RE57120.complete Sequence

1270 bp (1270 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071521

> RE57120.complete
CTTTAAATATAAATTGAAATCGATGGGTCGTTTCCATATCGATATTTTCT
CAAATTTTTGAGCTGTCCAAAACAATAAATACATACATTAAATATACCTT
TAATACAATACATTGAAGTCAAAATACAATTTTAAATTGCTAATCACTAT
TTCGCCGAATTTGCATAAACGCATGAGAACTATGACCGACTAAGCAAGTT
ATCTGAATGCAGTAGCTGAACCCCGAAAGCTAGAGAACAAAAAGTATAAA
TGTCGGAATCAATGTCAGGTGATCACAAAATTTTATTAAAAGGACATTCC
TCCCAATATTTAAAACTTAATGTTGGTGGTCATTTATATTATACCACAAT
TGGAACACTGACGAAAAACAATGACACAATGCTGAGCGCAATGTTTAGTG
GTAGAATGGAAGTGCTGACTGATTCGGAAGGATGGATTTTAATCGATCGC
TGTGGAAATCATTTTGGTATCATTCTTAATTATTTAAGAGATGGCACTGT
TCCATTACCAGAAACTAACAAGGAAATTGCAGAATTGCTTGCCGAAGCCA
AATACTACTGCATTACCGAGTTAGCTATTTCTTGTGAACGGGCACTATAT
GCTCATCAGGAGCCAAAGCCAATTTGCCGCATTCCACTTATAACTTCACA
AAAGGAAGAGCAGCTTTTATTAAGTGTTTCTTTAAAGCCGGCTGTTATTC
TTGTGGTTCAGCGGCAGAATAACAAGTATTCGTACACAAGTACATCAGAC
GACAACTTATTAAAAAATATTGAATTATTTGATAAGCTTTCTTTGCGCTT
TAACGAACGAATTTTGTTTATTAAAGACGTAATTGGGCCAAGTGAAATCT
GCTGCTGGTCATTTTACGGACACGGAAAAAAAGTAGCTGAAGTGTGTTGC
ACTTCAATAGTTTATGCAACTGACAGAAAGCATACTAAAGTTGAATTTCC
GGAAGCTCGTATATACGAAGAAACGCTACAAGTCTTGCTTTATGAAAACC
GCAATGCACCAGACCAAGAGCTCATGCAGGCAACGTCTTCAGCACGAGTA
GGAAGTGCAAGTGGAACCAGCATTAATCAGTACACAAGCGATGAGGAAGA
AGAACGCACTGGACTAGCGCGATTACGATCCAACAAGCGTAATAATCCGT
CCTGATTTACAAAACTCTATTACATATGATTGACATTGTTTTTTATAAAC
GATTAAAAAAAATATATATATGTTTTCTTTTCTTAATAAAAAAAAAAAAA
AAACAAAAAAAAAAAAAAAA

RE57120.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-RA 1378 CG10465-RA 78..1318 1..1241 6190 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1227096..1227908 1241..429 4065 100 Minus
chr2R 21145070 chr2R 1227955..1228385 431..1 2140 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:04:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5339702..5340514 1241..429 4065 100 Minus
2R 25286936 2R 5340561..5340991 431..1 2140 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5340901..5341713 1241..429 4065 100 Minus
2R 25260384 2R 5341760..5342190 431..1 2140 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 12:39:53 has no hits.

RE57120.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:40:45 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1227100..1227906 431..1237 100 <- Minus
chr2R 1227956..1228385 1..430 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:22 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 1..906 250..1155 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:38 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 1..906 250..1155 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:40:39 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 1..906 250..1155 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:48 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 1..906 250..1155 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:37 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 1..906 250..1155 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:43:22 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 1..1237 1..1237 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:38 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 1..1237 1..1237 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:40:39 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 5..1241 1..1237 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:48 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 1..1237 1..1237 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:37 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 5..1241 1..1237 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:45 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5339706..5340512 431..1237 100 <- Minus
2R 5340562..5340991 1..430 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:45 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5339706..5340512 431..1237 100 <- Minus
2R 5340562..5340991 1..430 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:45 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5339706..5340512 431..1237 100 <- Minus
2R 5340562..5340991 1..430 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:40:39 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1227211..1228017 431..1237 100 <- Minus
arm_2R 1228067..1228496 1..430 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:14:20 Download gff for RE57120.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5340905..5341711 431..1237 100 <- Minus
2R 5341761..5342190 1..430 99   Minus

RE57120.pep Sequence

Translation from 249 to 1154

> RE57120.pep
MSESMSGDHKILLKGHSSQYLKLNVGGHLYYTTIGTLTKNNDTMLSAMFS
GRMEVLTDSEGWILIDRCGNHFGIILNYLRDGTVPLPETNKEIAELLAEA
KYYCITELAISCERALYAHQEPKPICRIPLITSQKEEQLLLSVSLKPAVI
LVVQRQNNKYSYTSTSDDNLLKNIELFDKLSLRFNERILFIKDVIGPSEI
CCWSFYGHGKKVAEVCCTSIVYATDRKHTKVEFPEARIYEETLQVLLYEN
RNAPDQELMQATSSARVGSASGTSINQYTSDEEEERTGLARLRSNKRNNP
S*

RE57120.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21506-PA 297 GF21506-PA 1..297 5..301 1493 92.9 Plus
Dana\GF18213-PA 331 GF18213-PA 28..192 18..170 167 32.5 Plus
Dana\GF17150-PA 739 GF17150-PA 4..98 12..108 166 43.3 Plus
Dana\GF17008-PA 227 GF17008-PA 5..98 21..115 149 36.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10865-PA 301 GG10865-PA 1..301 1..301 1601 99 Plus
Dere\GG12384-PA 335 GG12384-PA 33..196 18..170 169 32.7 Plus
Dere\GG17322-PA 727 GG17322-PA 9..98 17..108 165 45.7 Plus
Dere\GG15048-PA 228 GG15048-PA 5..109 21..125 161 36.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23729-PA 297 GH23729-PA 1..297 5..301 1500 92.6 Plus
Dgri\GH20158-PA 297 GH20158-PA 1..297 5..301 1500 92.6 Plus
Dgri\GH14231-PA 810 GH14231-PA 4..98 12..108 163 43.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-PA 301 CG10465-PA 1..301 1..301 1558 100 Plus
CG14647-PB 335 CG14647-PB 33..196 18..170 163 33.3 Plus
inc-PC 211 CG32810-PC 14..152 11..144 159 32.6 Plus
inc-PD 211 CG32810-PD 14..152 11..144 159 32.6 Plus
inc-PB 211 CG32810-PB 14..152 11..144 159 32.6 Plus
Ktl-PB 228 CG10830-PB 3..99 19..115 159 38.8 Plus
Ktl-PA 228 CG10830-PA 3..99 19..115 159 38.8 Plus
CG9467-PA 730 CG9467-PA 9..98 17..108 158 46.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20668-PA 297 GI20668-PA 1..297 5..301 1500 92.6 Plus
Dmoj\GI10612-PA 329 GI10612-PA 27..190 17..170 175 34.3 Plus
Dmoj\GI22137-PA 787 GI22137-PA 4..98 12..108 164 43.3 Plus
Dmoj\GI21987-PA 230 GI21987-PA 3..111 19..125 153 36.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11047-PA 297 GL11047-PA 1..297 5..301 1507 93.3 Plus
Dper\GL23225-PA 395 GL23225-PA 10..98 18..108 160 45.1 Plus
Dper\GL23251-PA 228 GL23251-PA 2..109 18..125 158 36.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10330-PA 258 GA10330-PA 1..258 44..301 1320 94.2 Plus
Dpse\GA10583-PA 228 GA10583-PA 2..109 18..125 158 36.7 Plus
Dpse\GA21809-PA 751 GA21809-PA 10..98 18..108 158 44 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11095-PA 301 GM11095-PA 1..301 1..301 1600 99 Plus
Dsec\GM10753-PA 335 GM10753-PA 33..196 18..170 168 32.7 Plus
Dsec\GM23149-PA 228 GM23149-PA 5..98 21..114 162 40 Plus
Dsec\GM26209-PA 730 GM26209-PA 9..98 17..108 161 44.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10363-PA 301 GD10363-PA 1..301 1..301 1600 99 Plus
Dsim\GD19728-PA 335 GD19728-PA 33..196 18..170 167 32.7 Plus
Dsim\GD20024-PA 228 GD20024-PA 5..98 21..114 162 40 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20417-PA 297 GJ20417-PA 1..297 5..301 1500 92.6 Plus
Dvir\GJ24256-PA 795 GJ24256-PA 4..98 12..108 165 43.3 Plus
Dvir\GJ16035-PA 210 GJ16035-PA 14..126 11..124 160 32.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21368-PA 388 GK21368-PA 90..388 3..301 1483 91 Plus
Dwil\GK13533-PA 324 GK13533-PA 16..185 13..170 180 32.7 Plus
Dwil\GK14512-PA 756 GK14512-PA 4..174 12..167 166 31.8 Plus
Dwil\GK22689-PA 230 GK22689-PA 3..103 19..114 156 38.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11245-PA 301 GE11245-PA 1..301 1..301 1594 98.7 Plus
Dyak\GE25415-PA 335 GE25415-PA 33..196 18..170 170 32.7 Plus
Dyak\GE24726-PA 728 GE24726-PA 9..98 17..108 165 45.7 Plus
Dyak\GE25029-PA 228 GE25029-PA 5..109 21..125 163 37.7 Plus

RE57120.hyp Sequence

Translation from 249 to 1154

> RE57120.hyp
MSESMSGDHKILLKGHSSQYLKLNVGGHLYYTTIGTLTKNNDTMLSAMFS
GRMEVLTDSEGWILIDRCGNHFGIILNYLRDGTVPLPETNKEIAELLAEA
KYYCITELAISCERALYAHQEPKPICRIPLITSQKEEQLLLSVSLKPAVI
LVVQRQNNKYSYTSTSDDNLLKNIELFDKLSLRFNERILFIKDVIGPSEI
CCWSFYGHGKKVAEVCCTSIVYATDRKHTKVEFPEARIYEETLQVLLYEN
RNAPDQELMQATSSARVGSASGTSINQYTSDEEEERTGLARLRSNKRNNP
S*

RE57120.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-PA 301 CG10465-PA 1..301 1..301 1558 100 Plus
CG14647-PB 335 CG14647-PB 33..196 18..170 163 33.3 Plus
inc-PC 211 CG32810-PC 14..152 11..144 159 32.6 Plus
inc-PD 211 CG32810-PD 14..152 11..144 159 32.6 Plus
inc-PB 211 CG32810-PB 14..152 11..144 159 32.6 Plus