Clone RE57134 Report

Search the DGRC for RE57134

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:571
Well:34
Vector:pFlc-1
Associated Gene/TranscriptCG14015-RA
Protein status:RE57134.pep: gold
Sequenced Size:2136

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14015 2001-12-14 Blastp of sequenced clone
CG14015 2002-01-01 Sim4 clustering to Release 2
CG14015 2003-01-01 Sim4 clustering to Release 3
CG14015 2008-04-29 Release 5.5 accounting
CG14015 2008-08-15 Release 5.9 accounting
CG14015 2008-12-18 5.12 accounting

Clone Sequence Records

RE57134.complete Sequence

2136 bp (2136 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071523

> RE57134.complete
TGGGGACGAAAAACAACGAGGACGTCCAAACAATGAGAGAAAATGCACGC
TTGCGAAAATGCTGCTAAAAAAGTATGTGAAAACGCGGCGTAAGCTGAAG
ATTCTACTCCTGCTGGCCATCGTCGCCCTGCTGGTCATCACCATCATAGT
GCTGGGCTCCAGCGGACGCAATGCGGCCATCGAACTGCTGCTGGACGAGC
GATTCATCGCACGCGCCTACAGGCCCGGGGATCAGCCCCAAGTGGCGGAG
AAGCCGCCGCCGGTGGCCGTCGCGCTGCTCCAGCCGCAGCGGGAGAACGG
AGTGATTGTGCCCGAGAAGTATGACGAGCAGAAGATCAAGGAGCGCATCA
TTCAGAGCAAAATCGATCTGATGAAGCAGCAGCAGCAGCGGGACCACGAG
GCGGAGCAGTCTTCGCGTACCACTTTGGATGTGGTGATCAGTGCAGTGCA
CATATTCTACACTGCCCCGGTGCCGTGGTACAAGTCGAAGAAGCCGCCTC
CGCCGCCAGCGGAGCACCCAAACGATGTGCCACTGACCACGCCGCGACCA
GTGCGAATCCTAAACACCGCCTTCTATCCGGCACTGGGTCTGTACAAGCC
CAGTGGCTCGCTGCTGGCCCAGCATTTCGAGAACATACGCAGCTGTGGCA
TCGGTGTGCTCATCCTGAGCTTCTCCGGTGGCAAGCCCGCGGAGGCGGCA
CTGCTGCATCAGATCTTGGAACTGGCACCGCAGCACAATCTTAGCGTTAC
CTTTGAGCTCAGTGTGGCCGGGAATCAGAGCGTGGAGTTTGTGCGCCAGC
AGCTGCAGGAGATTGCCACATACACCAGCCTAGCTGGATTCTACAAGGTG
TGGAGTCAGTCGAGAGGTGTCTCCCTGCCGGTTCTCTACGTGAGCAATGC
CTACAAGTTGAGTGATAGTCTGGGAAGGCTGTTGTGTCGATCGCCTTCGC
TGGTGGAACCGGATGGTCTGCGGAGAATTCTGGATGCCTTATTCATTGGA
CACATAAGGCTCAAAAGCCATGCCGATGTCCTGCGGAGGTTGTGCTTCGA
TGGCTTCTACAGCAAACTGCCCAGCAATGGAGCTGTCTTCGCCAGCACTT
GGAAGAACTGGTCGTATCTGAAGTCATTTGCGCTGTCCTACAAGATGCTC
TTTGTGCCCACGGTGGGTCCGGGATTCGCGGAGAGGAACAAGTTTCCGCG
ACACGGAGACATCCAGCGGCATCGCAGCAATGGACGGTACTATGGCGTGG
CCTGGCGGACAGCCATTCTCAACCACGTGGGCTTCATCAACATAGCCAGC
TACAACAACTGGCCGGATGGCAGCCAGATCGAGGAGGTGATGCCACGCGC
CGGCTTCCTCGACTACAATCCGGGCTCGAGAACGAAATATCTGGATCTCA
CGGCCCATTGGGTGGGCAACTTTCTGAAGACGCGACAGGAGGCGGCGGCA
GCAGCCTCGCCAGCATCGCCGCCCAACTGTTACGAGCTGCTCAATGGAAC
CATATGCTAGGAGCGCACCAAGTGGGACTAGTTAGGAGCGCAGCGGAGAT
AATCCTAGTTACTTTAGAAGCAATAGCAACGATTGCAGGCCACTCAATTA
CTTTCCAACTGTTAAGAAGTCTTCTGCTGCACACATTTACACACTGCATA
AATATATCGTTTTGATAGTGATATTTTTGAAAACGCGCGCCCAAATGTCG
AGTTTTTTGGCGGGAAATGCAACGCACTTCATTCCAATTACATAAGTAAT
TTAAGTACTAAACGCCAATCAAAAAAAGAGAATTTTGAGAAGAGGTTTGA
GTTGGTTTCGCTGCCAAATCACTCGACACAGAATATATATGAAAGGAAAG
CAATTACAATTGATATCAATTAATAATGTAACTCTTTTTATTACATCTAT
AATATAAAATAGCTTTCAATTATCGTAGACTAAACGAGTAGAGGAGAACA
ATATCATAACTTAATGCCATGCCATATTATGTAGACACCAAAGGAAATTA
TCTATGTTATAACGATATAAACTAGACACTTGTTAAACGATTGGTACTTA
ACAAATTTTAACTTTATTACCAGTACGACATATAAATACTTTATCTAAGC
TTTAATAGTTTAGTGCCCACAAAAAAAAAAAAAAAA

RE57134.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14015-RA 2156 CG14015-RA 37..2156 1..2120 10600 100 Plus
Cap-D3-RA 5208 Cap-D3-RA 4948..5208 2122..1862 1305 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5535948..5536831 2120..1237 4420 100 Minus
chr2L 23010047 chr2L 5537185..5537781 1009..413 2985 100 Minus
chr2L 23010047 chr2L 5537855..5538266 412..1 2060 100 Minus
chr2L 23010047 chr2L 5536899..5537129 1237..1007 1155 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5536848..5537733 2122..1237 4430 100 Minus
2L 23513712 2L 5538087..5538683 1009..413 2985 100 Minus
2L 23513712 2L 5538757..5539168 412..1 2060 100 Minus
2L 23513712 2L 5537801..5538031 1237..1007 1155 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5536848..5537733 2122..1237 4430 100 Minus
2L 23513712 2L 5538087..5538683 1009..413 2985 100 Minus
2L 23513712 2L 5538757..5539168 412..1 2060 100 Minus
2L 23513712 2L 5537801..5538031 1237..1007 1155 100 Minus
Blast to na_te.dros performed 2019-03-16 12:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6759..6840 327..408 130 65.1 Plus

RE57134.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:40:46 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5537855..5538266 1..412 100   Minus
chr2L 5535948..5536830 1238..2120 100 <- Minus
chr2L 5536899..5537127 1009..1237 100 <- Minus
chr2L 5537186..5537781 413..1008 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:25 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 1..1452 59..1510 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:12:28 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 1..1452 59..1510 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:41:16 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 1..1452 59..1510 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:39 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 1..1452 59..1510 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:38 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 1..1452 59..1510 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:43:09 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 2..2121 1..2120 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:12:28 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 2..2121 1..2120 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:41:16 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 29..2148 1..2120 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:39 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 2..2121 1..2120 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:38 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
CG14015-RA 29..2148 1..2120 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:46 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5536850..5537732 1238..2120 100 <- Minus
2L 5537801..5538029 1009..1237 100 <- Minus
2L 5538088..5538683 413..1008 100 <- Minus
2L 5538757..5539168 1..412 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:46 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5536850..5537732 1238..2120 100 <- Minus
2L 5537801..5538029 1009..1237 100 <- Minus
2L 5538088..5538683 413..1008 100 <- Minus
2L 5538757..5539168 1..412 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:46 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5536850..5537732 1238..2120 100 <- Minus
2L 5537801..5538029 1009..1237 100 <- Minus
2L 5538088..5538683 413..1008 100 <- Minus
2L 5538757..5539168 1..412 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:41:16 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5537801..5538029 1009..1237 100 <- Minus
arm_2L 5536850..5537732 1238..2120 100 <- Minus
arm_2L 5538088..5538683 413..1008 100 <- Minus
arm_2L 5538757..5539168 1..412 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:14:09 Download gff for RE57134.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5536850..5537732 1238..2120 100 <- Minus
2L 5537801..5538029 1009..1237 100 <- Minus
2L 5538088..5538683 413..1008 100 <- Minus
2L 5538757..5539168 1..412 100   Minus

RE57134.hyp Sequence

Translation from 0 to 1509

> RE57134.hyp
GDEKQRGRPNNERKCTLAKMLLKKYVKTRRKLKILLLLAIVALLVITIIV
LGSSGRNAAIELLLDERFIARAYRPGDQPQVAEKPPPVAVALLQPQRENG
VIVPEKYDEQKIKERIIQSKIDLMKQQQQRDHEAEQSSRTTLDVVISAVH
IFYTAPVPWYKSKKPPPPPAEHPNDVPLTTPRPVRILNTAFYPALGLYKP
SGSLLAQHFENIRSCGIGVLILSFSGGKPAEAALLHQILELAPQHNLSVT
FELSVAGNQSVEFVRQQLQEIATYTSLAGFYKVWSQSRGVSLPVLYVSNA
YKLSDSLGRLLCRSPSLVEPDGLRRILDALFIGHIRLKSHADVLRRLCFD
GFYSKLPSNGAVFASTWKNWSYLKSFALSYKMLFVPTVGPGFAERNKFPR
HGDIQRHRSNGRYYGVAWRTAILNHVGFINIASYNNWPDGSQIEEVMPRA
GFLDYNPGSRTKYLDLTAHWVGNFLKTRQEAAAAASPASPPNCYELLNGT
IC*

RE57134.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14015-PA 483 CG14015-PA 1..483 20..502 2510 100 Plus

RE57134.pep Sequence

Translation from 58 to 1509

> RE57134.pep
MLLKKYVKTRRKLKILLLLAIVALLVITIIVLGSSGRNAAIELLLDERFI
ARAYRPGDQPQVAEKPPPVAVALLQPQRENGVIVPEKYDEQKIKERIIQS
KIDLMKQQQQRDHEAEQSSRTTLDVVISAVHIFYTAPVPWYKSKKPPPPP
AEHPNDVPLTTPRPVRILNTAFYPALGLYKPSGSLLAQHFENIRSCGIGV
LILSFSGGKPAEAALLHQILELAPQHNLSVTFELSVAGNQSVEFVRQQLQ
EIATYTSLAGFYKVWSQSRGVSLPVLYVSNAYKLSDSLGRLLCRSPSLVE
PDGLRRILDALFIGHIRLKSHADVLRRLCFDGFYSKLPSNGAVFASTWKN
WSYLKSFALSYKMLFVPTVGPGFAERNKFPRHGDIQRHRSNGRYYGVAWR
TAILNHVGFINIASYNNWPDGSQIEEVMPRAGFLDYNPGSRTKYLDLTAH
WVGNFLKTRQEAAAAASPASPPNCYELLNGTIC*

RE57134.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14748-PA 478 GF14748-PA 1..478 1..483 2281 91.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24298-PA 483 GG24298-PA 1..483 1..483 2514 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11449-PA 491 GH11449-PA 1..491 1..483 1910 76.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14015-PA 483 CG14015-PA 1..483 1..483 2510 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21905-PA 489 GI21905-PA 1..489 1..483 1978 79.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25901-PA 487 GL25901-PA 1..487 1..483 2180 85.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12699-PA 489 GA12699-PA 1..489 1..483 2160 86.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18015-PA 528 GM18015-PA 46..528 1..483 2537 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17818-PA 493 GJ17818-PA 1..493 1..483 1896 78.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14903-PA 488 GK14903-PA 1..488 1..483 1974 81.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18994-PA 483 GE18994-PA 1..483 1..483 2511 97.3 Plus