Clone RE57138 Report

Search the DGRC for RE57138

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:571
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCG2124-RA
Protein status:RE57138.pep: gold
Preliminary Size:2063
Sequenced Size:2793

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2124 2001-12-17 Blastp of sequenced clone
CG2124 2002-01-01 Sim4 clustering to Release 2
CG2124 2003-01-01 Sim4 clustering to Release 3
CG2124 2008-04-29 Release 5.5 accounting
CG2124 2008-08-15 Release 5.9 accounting
CG2124 2008-12-18 5.12 accounting

Clone Sequence Records

RE57138.complete Sequence

2793 bp (2793 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071525

> RE57138.complete
GGCAACGCTGCTTACCAGTCAGCTGTTTAGCCGGCAGGTTTTTCAACGAA
TGTTTTCATAACGCGTTTTCCATTCAAATTCAATTGAATTGAATTAATTT
ACAACCAAATATCGCTCTAAAACATGTGGGCAAGAACAAACTACCTCTGG
CGAAGTGTGGGACGTCTGCGCCGCCAAGTATGCACGACGATCGTTTCACC
AGCGCGAATATTTGCGGACCGAGAGAATCAGTTCGCCCATGGAATCCTGA
TGGATTCTCTCAAACCGTATGCAATACTGCGTCCTCGGGACTCCGCCTGG
CAGGATTTGCCCGCATCTGAAGGCTTTATGCGGCCACAGCCAGATGCCAG
TGCTGCCGATCTCTATGCGGACTTTTTAGGCCTGGTGAGGCACTGTAATC
GCATGGAACTGAAGATCAGCGATAGCCGCTACGAAGCCTTTACCCGCTGC
TTCTGTGAGCAGCTGCATCGCCTTACGGATGAACAACTTCTTGGATCGCT
TAGTGCCTTGGCCGAGCTGCCCGTACCGGAATCGCCCAAAGCCAAGAACT
ACATGGAGATATGGAATACCCTGGACATCGAGTGCTGTCGCCGCATCGAG
CGATGGTCCAGTGAACAATTGCTACTCGTGAGCGATGCCTGGTATCGTCT
TGGTCTGGTCAGGATAGGCGAGTACGTGTGGCTGGCGCTGAAAAAGCTCG
GCCGCAAGCTGCGAAAGCTGCCGCCAGAACAGCTCGTTCACTCCATGTTC
CTGTGCAATCTACTGCGCCGACCCGTCTTCGAGATGTTCGATTTCGAGTT
GAATCTGGCCCGCTGCGTGGATCAAATGACGCTGTCCGAATTGGGCGTAA
TGGCCATGGGCTTCTTTAAGACACAGACGCCTATCAGAAATCCGGAGCTG
CTAACGCAACTCTATCAGCGATTAGGCAGCGAGCTGGACACCGTGGAAGA
CATTGTCCTGGTAGCGCTGCTCAAGGTGCTGCGGTACAGCAGCAAGCTGC
CACAAGTGGAGCCGCTAAAGAAGATGTTAAGCGCTCTAGAGTCGCAAGTG
GATCGCGTTTCCCTCCTCACGTGCCTGCACATGGCTCTTCTGGGCTGTGA
ACTGCAAACGTGCAATGATGCACTGGTGGAGCGCATACTGCTGAGATTCG
AGCGTGAGTTAGAGACTGCCCGCCTCAAGGATATGGAGCGAATTTGTCTG
GTAATGGCCCTTTTCAATATTACAACTAAGTCGGGAGTGGAACGCCGGTT
GGCGGAGAGATTGCCCGATTTGCTGCGCCAGCGTATAGAGGAGATACTGC
GCCATCCTCGTTGTTTCTCCAACTGCCTTCAGTTTCTCACAATGCGTGGT
GTTTACGATCTTGAGCTTTTGGGCGTGGCACTGGAGCCGCGTTTCCTGAA
GCATGCGTACCCAAGCGGATTGCCCGGGCGTGAGTACTTCCATTTGGATG
GGTTCGCACGCCTCCTGGGGCCGGAATACCAGGGAGCACTGGTTACCGAG
AAGCAACGACAGCAGATGGGCCGCAATTACACGCAGTACATCCCCGATCG
GGACGGACGCTTCAAGCTGAATAATACCGATCGTATTCTAGTGGAAATAC
GGGATGCGATCACCATGATCCACCGTCCCGTGACCTTCAAGCACATCCTG
CCGCAATACGATCGATGCGATGTAGTGTTGTGCTACGACCGCCGGCAACG
GAAGGCGTTGTCCATAAATGGTGAGGCCTGTCAGGATTACAGCGGTGAGA
TTCTCACCCGGAAGCACTTACTGGGTGAGAGAAAGGCTGCGGATGACCAG
CTGGTCACAGTGGTTATCGTTATTGCCGGCTGGAACAACGTAATCCGCGA
TAAGGATCGTTTCACCGGCCAAATGGATATGAAGCTAAGGCAGCTGCGGC
AATTGGGACATCAGCCACTGGTGATCTATTGGCACGAGTGGCGGGAACTG
GAGAACTCAGCTGACCGCCAGGACTTTCTGAAACGCCGCCTTAGCCAAAT
TGCAAAAATTTAGCAGGAAATAAAAACGGCAATAGAATTGATATTAGTCA
GTCATTAGCATTATCTGAACATTGTACAGGCACAACACTACGATCTATTA
ATTATCTAGAAAAAAAAGCAATAATTATCGAATATTTAATAATGACCGCC
CGCGGCCGACAACTACTAGCACAGCGTCTTGCTCCCGGATCCCCGCAATC
GGACCGCAGCGGACCGTTCGTCGCGATCCATTGTATGGTTGATGCCGTCG
TCAGAGGGTGGCGCTCAACGCTCGCTTGGTGTACTCGTAGACCACGAACA
GGGTGGCCGTGGCTGGAATGGTGCGCAGGACAGATGGCAGCAGGCCGCGA
TAGAGTGCCAGGACACCTTCGCGACGGACTATGTCCGCTCCCACGGCGAA
CATGCTTTCGTTGAGGTTCTTCACCTGTATGCGACTCTTAATTACGTCTG
CAGGAAACGTCGACGTCCAGAGGCAGACGCCTCCAATGGCGCCGGCGATC
ATCGTACGCAGTGGTCCAATATCATCTTTGGATTGATCATCCCTGCAAAG
GAAAATAAGAATTATGCCAATGTAAATAACTATTTAACTTTGTCCAACAT
CTTTCATTTGAATAGACTAACGAAGATCGAGTTATCTGTCCAGCTAAGGA
TTTTGTTAAGATATTGTTGAACAAATTCTGTAAATGACTAAATATAACTA
TACTGCTAATTAGTATGATAACTGAAGAAGAACGATTGTTGTTCACTCGT
AAACATTAAACTCATTAATCTCCTTCTAAAAAAAAAAAAAAAA

RE57138.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2124-RA 2840 CG2124-RA 51..2828 1..2778 13890 100 Plus
CG1628.a 2245 CG1628.a 1450..2073 2546..1923 3120 100 Minus
CG1628-RB 2051 CG1628-RB 1256..1879 2546..1923 3120 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10487493..10489415 1..1923 9615 100 Plus
chrX 22417052 chrX 10489681..10490535 1923..2777 4275 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10596127..10598049 1..1923 9615 100 Plus
X 23542271 X 10598315..10599170 1923..2778 4280 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10604225..10606147 1..1923 9615 100 Plus
X 23527363 X 10606413..10607268 1923..2778 4280 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:17:30 has no hits.

RE57138.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:18:21 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10487493..10489415 1..1923 100 -> Plus
chrX 10489682..10490535 1924..2777 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:27 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
CG2124-RA 1..1890 124..2013 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:58:29 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
CG2124-RA 1..1890 124..2013 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:43 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
CG2124-RA 1..1890 124..2013 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:15 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
CG2124-RA 1..1890 124..2013 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:51 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
CG2124-RA 1..1890 124..2013 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:23:35 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
CG2124-RA 51..2825 1..2775 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:58:29 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
CG2124-RA 51..2825 1..2775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:43 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
CG2124-RA 6..2782 1..2777 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:16 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
CG2124-RA 51..2825 1..2775 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:51 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
CG2124-RA 6..2782 1..2777 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:21 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
X 10596127..10598049 1..1923 100 -> Plus
X 10598316..10599169 1924..2777 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:21 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
X 10596127..10598049 1..1923 100 -> Plus
X 10598316..10599169 1924..2777 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:21 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
X 10596127..10598049 1..1923 100 -> Plus
X 10598316..10599169 1924..2777 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:43 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10490160..10492082 1..1923 100 -> Plus
arm_X 10492349..10493202 1924..2777 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:16 Download gff for RE57138.complete
Subject Subject Range Query Range Percent Splice Strand
X 10604225..10606147 1..1923 100 -> Plus
X 10606414..10607267 1924..2777 100   Plus

RE57138.pep Sequence

Translation from 123 to 2012

> RE57138.pep
MWARTNYLWRSVGRLRRQVCTTIVSPARIFADRENQFAHGILMDSLKPYA
ILRPRDSAWQDLPASEGFMRPQPDASAADLYADFLGLVRHCNRMELKISD
SRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKNYMEIWNTL
DIECCRRIERWSSEQLLLVSDAWYRLGLVRIGEYVWLALKKLGRKLRKLP
PEQLVHSMFLCNLLRRPVFEMFDFELNLARCVDQMTLSELGVMAMGFFKT
QTPIRNPELLTQLYQRLGSELDTVEDIVLVALLKVLRYSSKLPQVEPLKK
MLSALESQVDRVSLLTCLHMALLGCELQTCNDALVERILLRFERELETAR
LKDMERICLVMALFNITTKSGVERRLAERLPDLLRQRIEEILRHPRCFSN
CLQFLTMRGVYDLELLGVALEPRFLKHAYPSGLPGREYFHLDGFARLLGP
EYQGALVTEKQRQQMGRNYTQYIPDRDGRFKLNNTDRILVEIRDAITMIH
RPVTFKHILPQYDRCDVVLCYDRRQRKALSINGEACQDYSGEILTRKHLL
GERKAADDQLVTVVIVIAGWNNVIRDKDRFTGQMDMKLRQLRQLGHQPLV
IYWHEWRELENSADRQDFLKRRLSQIAKI*

RE57138.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21432-PA 637 GF21432-PA 1..637 1..629 2563 76.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18361-PA 630 GG18361-PA 1..630 1..629 3080 91.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12705-PA 630 GH12705-PA 13..630 18..629 2223 67.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2124-PA 629 CG2124-PA 1..629 1..629 3280 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14469-PA 614 GI14469-PA 5..614 26..629 2210 67.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14978-PA 277 GL14978-PA 1..277 354..629 1117 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15256-PA 634 GA15256-PA 1..634 1..629 2458 72.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11426-PA 632 GM11426-PA 1..632 1..629 3172 94.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16979-PA 632 GD16979-PA 1..632 1..629 3172 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18804-PA 641 GJ18804-PA 24..641 15..629 2250 67.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20102-PA 643 GK20102-PA 1..643 1..629 2317 66.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17849-PA 629 GE17849-PA 1..629 1..629 3121 92.4 Plus

RE57138.hyp Sequence

Translation from 123 to 2012

> RE57138.hyp
MWARTNYLWRSVGRLRRQVCTTIVSPARIFADRENQFAHGILMDSLKPYA
ILRPRDSAWQDLPASEGFMRPQPDASAADLYADFLGLVRHCNRMELKISD
SRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKNYMEIWNTL
DIECCRRIERWSSEQLLLVSDAWYRLGLVRIGEYVWLALKKLGRKLRKLP
PEQLVHSMFLCNLLRRPVFEMFDFELNLARCVDQMTLSELGVMAMGFFKT
QTPIRNPELLTQLYQRLGSELDTVEDIVLVALLKVLRYSSKLPQVEPLKK
MLSALESQVDRVSLLTCLHMALLGCELQTCNDALVERILLRFERELETAR
LKDMERICLVMALFNITTKSGVERRLAERLPDLLRQRIEEILRHPRCFSN
CLQFLTMRGVYDLELLGVALEPRFLKHAYPSGLPGREYFHLDGFARLLGP
EYQGALVTEKQRQQMGRNYTQYIPDRDGRFKLNNTDRILVEIRDAITMIH
RPVTFKHILPQYDRCDVVLCYDRRQRKALSINGEACQDYSGEILTRKHLL
GERKAADDQLVTVVIVIAGWNNVIRDKDRFTGQMDMKLRQLRQLGHQPLV
IYWHEWRELENSADRQDFLKRRLSQIAKI*

RE57138.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2124-PA 629 CG2124-PA 1..629 1..629 3280 100 Plus