BDGP Sequence Production Resources |
Search the DGRC for RE57173
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 571 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG31278-RA |
Protein status: | RE57173.pep: gold |
Sequenced Size: | 878 |
Gene | Date | Evidence |
---|---|---|
CG31278 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31278 | 2004-10-22 | Blastp of sequenced clone |
CG31278 | 2008-04-29 | Release 5.5 accounting |
CG31278 | 2008-08-15 | Release 5.9 accounting |
CG31278 | 2008-12-18 | 5.12 accounting |
878 bp (878 high quality bases) assembled on 2004-10-22
GenBank Submission: BT015988
> RE57173.complete GTTGTGTAACTATATTCCCTACGATTTTGATCGGAATATTAAAGGAGGCT AAACATTTCACAAAATGCACCTGAAACCACGGATAAAAGTATGCCAAGCG ATTCTGGGACATTGTCGATCCTTTGGAACGAGTCCTCCCGCTAATCAGTC GTTCAGGAAGTGGTACCAGCACCTGTGGACCACGGAGCGCACAAACTTGC CGCCATACAACCATTTCACCCAGATTGGTGACCCTGTTCTTAGGCAACAA GCGGCTTTGGTGCCCAAGGAGCACATGGCTAGCCCCGAGATTAAGGCCAT CGTCGAGCGGATGGTCAAGGTGCTAAGGAAGTTCGACTGCGTCGGCATTG CGGCTCCTCAGATTGGAGTATCGCTCAGGATCATAGCAATGGAGTTCAAG GGACGGATCCGAAAGGAGCTGCCCGAGGCCGTTTACCAAGCCCGACAAAT GTCCGAGTTGCCACTGACTATTTTCATCAATCCCGTCCTGACGGTGACCA ACTACGCGAAGCTGAAGCATCCAGAAGGATGCATGAGTGTGCGAGGTTAC TCTGCCGAAGTGGAGCGTTTCGAAGGTGTAAAGCTAACAGGCCTTGACCA ACTAGGAAACCAAAGCGAACTGGCTCTGAGTGGTTGGAATGCCCGGATAG CGCAGCACGAAATGGATCACCTGGAGGGAAAACTATACACCGATCACATG GACCGCTCAACCTTTGCGTGCACCTGCTGGGAGGCGGTTAACACGAAATC CGGACGCGTGGAGATACCCTTCTACAAGTAGTTAAGTCGCTCGTGGATCG TTTCACTATTTATGTATGTATATATACTGATTGAATGGAATTCTATCTGG CAAATGTTAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31278-RA | 951 | CG31278-RA | 14..871 | 1..858 | 4290 | 100 | Plus |
nc_15893.a | 366 | nc_15893.a | 81..366 | 470..755 | 1430 | 100 | Plus |
nc_15893.a | 366 | nc_15893.a | 1..80 | 9..88 | 400 | 100 | Plus |
CG14684-RA | 487 | CG14684-RA | 425..487 | 858..796 | 315 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6532938..6533330 | 470..862 | 98 | <- | Minus |
chr3R | 6533402..6533870 | 1..469 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31278-RA | 1..717 | 65..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31278-RA | 1..717 | 65..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31278-RA | 1..717 | 65..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31278-RA | 1..717 | 65..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31278-RA | 1..717 | 65..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31278-RA | 1..858 | 1..858 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31278-RA | 1..858 | 1..858 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31278-RA | 15..872 | 1..858 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31278-RA | 1..858 | 1..858 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG31278-RA | 15..872 | 1..858 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10707394..10707786 | 470..862 | 98 | <- | Minus |
3R | 10707858..10708326 | 1..469 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10707394..10707786 | 470..862 | 98 | <- | Minus |
3R | 10707858..10708326 | 1..469 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10707394..10707786 | 470..862 | 98 | <- | Minus |
3R | 10707858..10708326 | 1..469 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6533116..6533508 | 470..862 | 98 | <- | Minus |
arm_3R | 6533580..6534048 | 1..469 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10448225..10448617 | 470..862 | 98 | <- | Minus |
3R | 10448689..10449157 | 1..469 | 100 | Minus |
Translation from 64 to 780
> RE57173.pep MHLKPRIKVCQAILGHCRSFGTSPPANQSFRKWYQHLWTTERTNLPPYNH FTQIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQI GVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKL KHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEM DHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFYK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17444-PA | 238 | GF17444-PA | 4..238 | 4..238 | 1044 | 80 | Plus |
Dana\GF17443-PA | 196 | GF17443-PA | 4..196 | 46..238 | 623 | 59.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17276-PA | 238 | GG17276-PA | 1..238 | 1..238 | 1195 | 92 | Plus |
Dere\GG17275-PA | 196 | GG17275-PA | 4..196 | 46..238 | 600 | 56 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17361-PA | 234 | GH17361-PA | 12..234 | 16..238 | 942 | 78 | Plus |
Dgri\GH17360-PA | 203 | GH17360-PA | 11..203 | 46..238 | 616 | 59.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31278-PA | 238 | CG31278-PA | 1..238 | 1..238 | 1264 | 100 | Plus |
CG31278-PB | 145 | CG31278-PB | 1..136 | 1..136 | 714 | 99.3 | Plus |
CG31373-PA | 196 | CG31373-PA | 4..196 | 46..238 | 602 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23900-PA | 234 | GI23900-PA | 12..234 | 16..238 | 972 | 79.4 | Plus |
Dmoj\GI23899-PA | 203 | GI23899-PA | 11..203 | 46..238 | 584 | 56 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12633-PA | 238 | GL12633-PA | 1..238 | 1..238 | 1030 | 78.6 | Plus |
Dper\GL12632-PA | 196 | GL12632-PA | 2..196 | 44..238 | 634 | 59.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16144-PA | 238 | GA16144-PA | 1..238 | 1..238 | 1024 | 78.2 | Plus |
Dpse\GA16218-PA | 196 | GA16218-PA | 2..196 | 44..238 | 631 | 59 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26160-PA | 238 | GM26160-PA | 1..238 | 1..238 | 1249 | 96.2 | Plus |
Dsec\GM26159-PA | 196 | GM26159-PA | 4..196 | 46..238 | 616 | 57.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20713-PA | 239 | GD20713-PA | 1..226 | 1..226 | 1167 | 94.7 | Plus |
Dsim\GD20712-PA | 196 | GD20712-PA | 4..196 | 46..238 | 610 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23993-PA | 234 | GJ23993-PA | 12..234 | 16..238 | 950 | 76.7 | Plus |
Dvir\GJ23992-PA | 203 | GJ23992-PA | 5..203 | 39..238 | 603 | 56.5 | Plus |
Translation from 64 to 780
> RE57173.hyp MHLKPRIKVCQAILGHCRSFGTSPPANQSFRKWYQHLWTTERTNLPPYNH FTQIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQI GVSLRIIAMEFKGRIRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKL KHPEGCMSVRGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEM DHLEGKLYTDHMDRSTFACTCWEAVNTKSGRVEIPFYK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG31278-PA | 238 | CG31278-PA | 1..238 | 1..238 | 1264 | 100 | Plus |
CG31278-PB | 145 | CG31278-PB | 1..136 | 1..136 | 714 | 99.3 | Plus |
CG31373-PA | 196 | CG31373-PA | 4..196 | 46..238 | 602 | 58 | Plus |