Clone RE57309 Report

Search the DGRC for RE57309

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:573
Well:9
Vector:pFlc-1
Associated Gene/TranscriptCG10359-RG
Protein status:RE57309.pep: gold
Preliminary Size:1501
Sequenced Size:1700

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10359 2001-12-14 Blastp of sequenced clone
CG10359 2002-01-01 Sim4 clustering to Release 2
CG10359 2003-01-01 Sim4 clustering to Release 3
CG10359 2008-04-29 Release 5.5 accounting
CG10359 2008-08-15 Release 5.9 accounting
CG10359 2008-12-18 5.12 accounting

Clone Sequence Records

RE57309.complete Sequence

1700 bp (1700 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071528

> RE57309.complete
AGTTTCTTCGCAAACTTCAACCGGAACGGACGTATTGATCTCGGATTTTC
CTTGGATCTTGCGTGGAACCAAGGATAGGTGTCAGATTCTCGATTTGTTT
GCTTTGAGCGACGCGTAAACAAAGTGACATGATGAGGCCCCAATTAGCGG
CCATAGCCACTGTCATGGTGCTGGCTGCGATCTGCGGTTTTGGCACTGGT
TCCGTGCTGGAAGTACCCGGAGTCACCCAGGCACCACCACTCCCACCTCG
TAACCTCCGAAACAACCAAACGCGGTCGCGCATTCCCAACAACTTCCGAA
GCATTGCGACCCCACCAATTGCTCCCAGATGCGACTACAAGGAGCTGATG
ACCAATCTGCACGATCGCGTTGGCATCTTGGTGACCTTGGACGAGGACCA
GCGCCACCGGCTGGAAGTCATCGATAAGAAATTGGATCAGCTGGTGGAAA
GCAGTTCGGCCCGCATGGAATCGATGAAGGCCCAGCAATTGGACTTCCTG
CACAGACTGGACAGTTTTGAGCACATCCAGCGGCTTTCGAGGAACACTCT
AGATGAGCTTAAAGATATCTCGCGCACTGTTCGTGACGTTTCCCAGGAAC
AGTATCCCAGCTCGGGAATAGGTACATTTAATGAATCCAACTTGAATTTA
TCAAGTCGTCTGGATGCCTTGGCCACGCTTTTGGCTTCTACTGCTCTCAG
TGTCAGATCTGTGCAGGTTGAAGTGGCCAATCTTTCACGGGCCATTAGGC
GCCAAAGCCGTTTGATCCAGGGTAAGGGATTGAGGTCGACACCAGGTCAG
CAGCCAATCTTCTACGGTCCAAGTGGATTAAATGGACCAACAGCTACACG
GCAGTTGCCTAGTAGTTGCTCCTATTCCTTCCTTTCTAACCACGGAATTC
TAAAAGTACAGCTCACACCCGAATCGGAATCCTTCTACGTATCCTGCGAT
GAGGATTGGACTGTTATTTTGAGCCGCACCTCCGATGATGTGAACTTCGA
ACGCGGCTGGCTGGATTATCGCGATGGCTTTGGCAATTTGGCTGGGGACT
TCTTTATTGGTCTCAACAAACTGCATGCCCTCACTTCATCGGCCTTGCAC
GAACTGCGGATTGTGATGGAGGACTTCTCGGGCAACGTGGCGTATGCGGG
ATATTCGTTGTTTGCCATTGGCAGCGAAAAGGAACTATATCCACTCGTCT
TGCTGGGCAAATTCCAGGATAATTTGACTCCTTCAGCTGGAGATTCATTG
TCCTATCATGCTGGAGCTAAGTTTAGCACTGTGGATCAGGATAATGACAA
CTGCCTGGAGTGCAATTGCGCCCTGAGACACAAGGGAGCTGGATGGTTTA
ACAACTGCGCAAAGAGCAACTTATTCGGCGAATATACCACCCAGAACCAA
CCTGGAGAAACTGGGATCTGGTGGGACACCTTTTCAGGGCAGAATTCGCT
GAAACGGGTTCGTTGGATGATTCGTCCCATTTCCGAAGGAATAGATGATG
CCAGGCGATAGGATATCTAGAAGAACATCTACCCATATCCAACTGCCATC
TCCGAAATCAGGGATAACCCACAATCGATTGCTTGCATTTTAACCCTAGC
TTTAGCTTTGAATCTCTCTGTGCGTGTGTGTGTAATATTTATGGAAAATT
ACTTAATACCTAGATAATACAGTAAATTTACGACAAAAAAAAAAAAAAAA

RE57309.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10359.b 1863 CG10359.b 124..1806 1..1683 8415 100 Plus
CG10359.a 1829 CG10359.a 653..1772 564..1683 5600 100 Plus
CG10359-RE 1829 CG10359-RE 653..1772 564..1683 5600 100 Plus
CG10359.a 1829 CG10359.a 12..575 1..564 2820 100 Plus
CG10359-RE 1829 CG10359-RE 12..575 1..564 2820 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3613668..3614606 745..1683 4695 100 Plus
chr3L 24539361 chr3L 3611555..3611853 1..299 1465 99.3 Plus
chr3L 24539361 chr3L 3613429..3613615 563..749 935 100 Plus
chr3L 24539361 chr3L 3613110..3613243 431..564 670 100 Plus
chr3L 24539361 chr3L 3612436..3612566 300..430 655 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3614307..3615245 745..1683 4695 100 Plus
3L 28110227 3L 3612194..3612492 1..299 1495 100 Plus
3L 28110227 3L 3614068..3614254 563..749 935 100 Plus
3L 28110227 3L 3613749..3613882 431..564 670 100 Plus
3L 28110227 3L 3613075..3613205 300..430 655 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3614307..3615245 745..1683 4695 100 Plus
3L 28103327 3L 3612194..3612492 1..299 1495 100 Plus
3L 28103327 3L 3614068..3614254 563..749 935 100 Plus
3L 28103327 3L 3613749..3613882 431..564 670 100 Plus
3L 28103327 3L 3613075..3613205 300..430 655 100 Plus
Blast to na_te.dros performed on 2019-03-15 14:24:33 has no hits.

RE57309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:25:28 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3611555..3611853 1..299 99 -> Plus
chr3L 3612436..3612566 300..430 100 -> Plus
chr3L 3613110..3613243 431..564 100 -> Plus
chr3L 3613431..3613614 565..748 100 -> Plus
chr3L 3613672..3614606 749..1684 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:32 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
CG10359-RG 1..1380 132..1511 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:04:18 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
CG10359-RG 1..1380 132..1511 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:28:09 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
CG10359-RG 1..1380 132..1511 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:29:01 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
CG10359-RG 1..1380 132..1511 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:58:03 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
CG10359-RG 1..1380 132..1511 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:31:45 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
CG10359-RG 1..1683 1..1683 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:04:18 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
CG10359-RG 1..1683 1..1683 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:28:09 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
CG10359-RG 3..1684 1..1682 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:29:01 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
CG10359-RG 1..1683 1..1683 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:58:03 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
CG10359-RG 3..1684 1..1682 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:28 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3612194..3612492 1..299 100 -> Plus
3L 3613075..3613205 300..430 100 -> Plus
3L 3613749..3613882 431..564 100 -> Plus
3L 3614070..3614253 565..748 100 -> Plus
3L 3614311..3615245 749..1684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:28 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3612194..3612492 1..299 100 -> Plus
3L 3613075..3613205 300..430 100 -> Plus
3L 3613749..3613882 431..564 100 -> Plus
3L 3614070..3614253 565..748 100 -> Plus
3L 3614311..3615245 749..1684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:28 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3612194..3612492 1..299 100 -> Plus
3L 3613075..3613205 300..430 100 -> Plus
3L 3613749..3613882 431..564 100 -> Plus
3L 3614070..3614253 565..748 100 -> Plus
3L 3614311..3615245 749..1684 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:28:09 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3612194..3612492 1..299 100 -> Plus
arm_3L 3613075..3613205 300..430 100 -> Plus
arm_3L 3613749..3613882 431..564 100 -> Plus
arm_3L 3614070..3614253 565..748 100 -> Plus
arm_3L 3614311..3615245 749..1684 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:56 Download gff for RE57309.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3612194..3612492 1..299 100 -> Plus
3L 3613075..3613205 300..430 100 -> Plus
3L 3613749..3613882 431..564 100 -> Plus
3L 3614070..3614253 565..748 100 -> Plus
3L 3614311..3615245 749..1684 99   Plus

RE57309.pep Sequence

Translation from 128 to 1510

> RE57309.pep
MMRPQLAAIATVMVLAAICGFGTGSVLEVPGVTQAPPLPPRNLRNNQTRS
RIPNNFRSIATPPIAPRCDYKELMTNLHDRVGILVTLDEDQRHRLEVIDK
KLDQLVESSSARMESMKAQQLDFLHRLDSFEHIQRLSRNTLDELKDISRT
VRDVSQEQYPSSGIGTFNESNLNLSSRLDALATLLASTALSVRSVQVEVA
NLSRAIRRQSRLIQGKGLRSTPGQQPIFYGPSGLNGPTATRQLPSSCSYS
FLSNHGILKVQLTPESESFYVSCDEDWTVILSRTSDDVNFERGWLDYRDG
FGNLAGDFFIGLNKLHALTSSALHELRIVMEDFSGNVAYAGYSLFAIGSE
KELYPLVLLGKFQDNLTPSAGDSLSYHAGAKFSTVDQDNDNCLECNCALR
HKGAGWFNNCAKSNLFGEYTTQNQPGETGIWWDTFSGQNSLKRVRWMIRP
ISEGIDDARR*

RE57309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24215-PA 454 GF24215-PA 1..454 2..460 1573 69.9 Plus
Dana\GF12978-PA 248 GF12978-PA 30..243 244..450 405 44.7 Plus
Dana\GF12980-PA 268 GF12980-PA 48..263 241..450 402 44.6 Plus
Dana\GF19143-PA 324 GF19143-PA 43..320 175..450 399 37.1 Plus
Dana\GF13877-PA 250 GF13877-PA 43..245 250..450 390 43.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15149-PA 464 GG15149-PA 1..464 2..460 2110 85.8 Plus
Dere\GG18953-PA 334 GG18953-PA 54..333 185..453 435 39.1 Plus
Dere\GG10629-PA 417 GG10629-PA 57..403 135..453 394 32.1 Plus
Dere\GG23629-PA 277 GG23629-PA 42..271 220..450 387 41.5 Plus
Dere\GG18333-PA 332 GG18333-PA 50..328 174..450 379 35.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16419-PA 470 GH16419-PA 8..470 13..460 1166 52.4 Plus
Dgri\GH23081-PA 301 GH23081-PA 75..287 240..450 431 44.7 Plus
Dgri\GH12910-PA 320 GH12910-PA 96..318 239..453 417 42.9 Plus
Dgri\GH21805-PA 336 GH21805-PA 135..332 256..452 403 43.3 Plus
Dgri\GH22894-PA 214 GH22894-PA 4..213 243..453 389 40.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10359-PG 459 CG10359-PG 1..459 2..460 2385 100 Plus
CG10359-PE 485 CG10359-PE 1..485 2..460 2348 94.6 Plus
CG1791-PC 333 CG1791-PC 54..332 185..453 413 38.9 Plus
CG1791-PA 334 CG1791-PA 54..333 185..453 412 38.8 Plus
CG9500-PB 292 CG9500-PB 53..286 219..450 396 40.9 Plus
CG8642-PB 429 CG8642-PB 243..415 277..453 392 47.5 Plus
CG1791-PB 195 CG1791-PB 2..194 267..453 375 45 Plus
CG5550-PA 246 CG5550-PA 33..245 241..450 363 40 Plus
CG30281-PA 291 CG30281-PA 65..273 244..450 360 41 Plus
CG1889-PC 332 CG1889-PC 50..328 174..450 360 34.5 Plus
CG1889-PA 332 CG1889-PA 50..328 174..450 360 34.5 Plus
CG31832-PB 227 CG31832-PB 29..224 253..450 356 42.4 Plus
CG30280-PD 288 CG30280-PD 67..278 244..450 354 38.2 Plus
CG1889-PD 338 CG1889-PD 50..334 174..450 352 32.9 Plus
CG5550-PB 250 CG5550-PB 33..249 241..450 348 39.3 Plus
CG6788-PA 358 CG6788-PA 160..355 256..450 327 39.6 Plus
CG41520-PD 627 CG41520-PD 407..614 252..450 265 34.4 Plus
CG41520-PA 745 CG41520-PA 525..732 252..450 265 34.4 Plus
sca-PB 799 CG17579-PB 537..709 242..419 257 32.4 Plus
sca-PA 799 CG17579-PA 537..709 242..419 257 32.4 Plus
CG9593-PB 382 CG9593-PB 196..372 277..452 254 34.3 Plus
CG41520-PB 729 CG41520-PB 525..716 252..450 240 32.2 Plus
CG7668-PC 422 CG7668-PC 72..421 79..451 181 22 Plus
CG7668-PA 422 CG7668-PA 72..421 79..451 181 22 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12498-PA 468 GI12498-PA 59..468 60..460 1192 56.7 Plus
Dmoj\GI18379-PA 330 GI18379-PA 103..329 231..453 426 39.2 Plus
Dmoj\GI20830-PA 239 GI20830-PA 21..238 237..451 406 42.9 Plus
Dmoj\GI20776-PA 378 GI20776-PA 183..373 256..450 405 44.9 Plus
Dmoj\GI14614-PA 322 GI14614-PA 95..318 229..450 403 40.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16674-PA 447 GL16674-PA 17..447 24..460 1460 65.8 Plus
Dper\GL22699-PA 325 GL22699-PA 111..318 243..450 415 42.3 Plus
Dper\GL26064-PA 458 GL26064-PA 196..446 196..450 392 37.2 Plus
Dper\GL26267-PA 193 GL26267-PA 15..187 277..450 380 47.5 Plus
Dper\GL26564-PA 224 GL26564-PA 26..212 263..450 376 44.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28607-PA 455 GA28607-PA 1..455 1..460 1506 65.2 Plus
Dpse\GA23387-PA 276 GA23387-PA 62..269 243..450 414 42.3 Plus
Dpse\GA21232-PA 434 GA21232-PA 230..416 269..453 408 45.5 Plus
Dpse\GA28101-PA 220 GA28101-PA 27..214 267..450 387 46.9 Plus
Dpse\GA14719-PA 324 GA14719-PA 44..319 176..450 382 35.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14581-PA 460 GM14581-PA 1..460 1..460 2381 95.9 Plus
Dsec\GM18824-PA 334 GM18824-PA 52..333 176..453 431 38.3 Plus
Dsec\GM17946-PA 293 GM17946-PA 54..287 219..450 413 42.1 Plus
Dsec\GM20674-PA 418 GM20674-PA 196..404 245..453 402 43.7 Plus
Dsec\GM14577-PA 227 GM14577-PA 22..224 244..450 360 42.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13774-PA 486 GD13774-PA 1..486 1..460 2336 90.5 Plus
Dsim\GD24553-PA 306 GD24553-PA 93..305 244..453 420 42.6 Plus
Dsim\GD22585-PA 292 GD22585-PA 10..286 184..450 405 37.6 Plus
Dsim\GD24781-PA 332 GD24781-PA 50..328 174..450 367 34.5 Plus
Dsim\GD11645-PA 292 GD11645-PA 66..274 244..450 364 41.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12404-PA 482 GJ12404-PA 39..482 45..460 1230 56.5 Plus
Dvir\GJ20563-PA 242 GJ20563-PA 25..241 238..451 436 45.3 Plus
Dvir\GJ20511-PA 390 GJ20511-PA 189..384 256..450 432 45.8 Plus
Dvir\GJ19428-PA 324 GJ19428-PA 47..323 178..453 408 38.5 Plus
Dvir\GJ12860-PA 287 GJ12860-PA 62..279 235..450 407 44.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20518-PA 447 GK20518-PA 58..440 58..452 1259 62.5 Plus
Dwil\GK15361-PA 228 GK15361-PA 25..224 256..450 470 48 Plus
Dwil\GK19592-PA 195 GK19592-PA 3..191 267..450 431 48.2 Plus
Dwil\GK25564-PA 336 GK25564-PA 56..335 178..453 424 36.1 Plus
Dwil\GK15364-PA 211 GK15364-PA 10..206 256..450 400 44.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21371-PA 462 GE21371-PA 1..462 1..460 2212 89 Plus
Dyak\GE15425-PA 335 GE15425-PA 55..334 185..453 435 39.5 Plus
Dyak\GE18450-PA 249 GE18450-PA 40..243 250..450 391 43.8 Plus
Dyak\GE22879-PA 418 GE22879-PA 233..405 277..453 391 46.3 Plus
Dyak\GE17819-PA 332 GE17819-PA 50..328 174..450 389 35.9 Plus

RE57309.hyp Sequence

Translation from 128 to 1510

> RE57309.hyp
MMRPQLAAIATVMVLAAICGFGTGSVLEVPGVTQAPPLPPRNLRNNQTRS
RIPNNFRSIATPPIAPRCDYKELMTNLHDRVGILVTLDEDQRHRLEVIDK
KLDQLVESSSARMESMKAQQLDFLHRLDSFEHIQRLSRNTLDELKDISRT
VRDVSQEQYPSSGIGTFNESNLNLSSRLDALATLLASTALSVRSVQVEVA
NLSRAIRRQSRLIQGKGLRSTPGQQPIFYGPSGLNGPTATRQLPSSCSYS
FLSNHGILKVQLTPESESFYVSCDEDWTVILSRTSDDVNFERGWLDYRDG
FGNLAGDFFIGLNKLHALTSSALHELRIVMEDFSGNVAYAGYSLFAIGSE
KELYPLVLLGKFQDNLTPSAGDSLSYHAGAKFSTVDQDNDNCLECNCALR
HKGAGWFNNCAKSNLFGEYTTQNQPGETGIWWDTFSGQNSLKRVRWMIRP
ISEGIDDARR*

RE57309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10359-PG 459 CG10359-PG 1..459 2..460 2385 100 Plus
CG10359-PE 485 CG10359-PE 1..485 2..460 2348 94.6 Plus
CG1791-PC 333 CG1791-PC 54..332 185..453 413 38.9 Plus
CG1791-PA 334 CG1791-PA 54..333 185..453 412 38.8 Plus
CG9500-PA 272 CG9500-PA 33..266 219..450 396 40.9 Plus