Clone RE57384 Report

Search the DGRC for RE57384

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:573
Well:84
Vector:pFlc-1
Associated Gene/TranscriptS2P-RA
Protein status:RE57384.pep: gold
Preliminary Size:1735
Sequenced Size:2034

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8988 2001-12-14 Blastp of sequenced clone
CG8988 2002-01-01 Sim4 clustering to Release 2
CG8988 2003-01-01 Sim4 clustering to Release 3
S2P 2008-04-29 Release 5.5 accounting
S2P 2008-08-15 Release 5.9 accounting
S2P 2008-12-18 5.12 accounting

Clone Sequence Records

RE57384.complete Sequence

2034 bp (2034 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071529

> RE57384.complete
CTGTAATCGATTGCGATTAGCTTTTGGTATTTCGATTTTTTACGCAGGTT
AATTTGCGCACAAGATTCCCAGACGTGATTAATGCTGATTTCTGGTCTGG
ACTACACAGCATTGCTGGTATAAGGAGTCGGGACCAGAGGAGTAAGATTT
CGGGAAGGAATCCCGTCCGGTAGGGACTACTAGCATTCGCAAGTGACGTC
CAGCAACCGGAGGACCCCCAACTGTAGAATCCGCATCACCATCCTAATCC
CAACAAACCAATGACATCTTGAGACCTCACCAGCCATGGATCCCTTCGTG
TTCTTCATAGTACTGGCATCGCTTTATGGCGTTCTTTACTTTTTCGACCG
CTTCTTCAAGAGTTGCATGCACTACCCGTACGATGCCTTCCTCAAGAACA
CCGGGCTGAGTATAAATTTCATGAGCCTCCACTGGCACACGAGTGCCTTT
AACAGGACCCTCCTACGCTGGGGATCTGCCGGTAACAGCTGCACCCGGAG
AGTAATGATCACCAGCTTTAATGTAGGAGTCCTGGTCACCTTTTCTCTGC
TCCCGATCGGTCTGATCCTGCTCATTGCCACTATCTTCAGCAGTGGTGAA
CAAGACAGCTCTTCGTCTGTATCCTCGCCCGTTGGAGTCCCTGTGCAGCT
GGAAATTCTACTGCCCGGCGTCAACTTGCCGTTGGAGGAGATCGGATACT
ACATCACAACCCTTGTGCTCTGCTTGGTGGTGCACGAGATGGGACACGCC
CTGGCCGCTGTGATGGAGGATGTGCCTGTCACCGGGTTTGGAATAAAGTT
CATCTTCTGCCTGCCGTTAGCATACACGGAGCTCTCCCACGACCACTTAA
ACAGTCTACGTTGGTTCCGCAAGCTACGTGTTCTGTGCGCTGGAATCTGG
CATAATTTTGTGTTCGCTGGCGTGTGCTATCTCTTAATCTCAACGGTGGG
AATCACTATGTCACCTTTGTACGCTTACAACCAACACGTAGTGGTCACTG
AACTAACAAGGAAATCCCCGCTGAGGGGAGAGCGCGGCTTGCAAGTGGAC
AATCAAATAACCCAAGTAAACGGCTGCCCAGTAAACAGCGAGGAGAGTTG
GGTGACATGCCTGCAGAACTCTCTGAAGCTCAAGCCGGGCTACTGTGTGA
GTGCGGACTTCGTGCAGCTTAACGACGAAAGCAGCGCCATCTCACATCAT
AGCATTGATGGTCAGCTACAGTGCTGTGATGAACTAAATCCGAACGTAAG
CTGCTTCGAGGTGGTGGAGGACGCAAATGGAGATGTGCCGGTGGAGCTGC
CGCAGCATGTATGTCTCAATGTGCGCCGCACTTTGGAGGAGGTCTCCGAG
CACTGCTCGTCCGGAGTTTGCAACGAGGGATTCTGCCTACGACCGCTTAT
ACGAAATATCACTGCCATAATGACGTTCAAGCGACAGAATTTTCGCGGAG
AGAAGCTGCCGCCGGTGATCTATGTGGGCCATCCATGGGATGTCACTCGA
ACTGTGGAGGTATCCGCCTTTGTGCCGAGATATAGCTTATTAAAGGCAGC
CTGGCCGGATGCCTGGCTGCTGCTCCTCAAGTATAACGTGGTCTTCAGCA
TAGGATTGGCGTTGATCAATGCCATTCCCTGCTTTGGTTTCGATGGCGCC
CACATTACCAGCACCGTGATACACAGCTTCTTGGTGGGCAGAGTGGATCA
GCATGCCAAGAGAGATATCATCTCGTTGATAATCACCAGCGTGGGTTCCC
TTCTCTTTGCACTGGCCCTGCTTAAGGTGGCCTGGTTGAGTTTTCTGCGA
CCCCTGCTTTAAGAACTGAAATGGAAAACTGAAATGGATCCTGGGAGTTC
AACTCCCTGCAAAGACGCTAGACTGCTATTTCACCTTCACGAAACACACA
AAAACACAGCGAATTGTAGCACCTCAAAGATTCGATAGCTTTTTGTCATA
GTCCTTAGTCTTAACTCGTATTTATTTTCGTACGGTTGTCGAGCTCAAAA
ATAAAATCAAATTAAGCCAAAAAAAAAAAAAAAA

RE57384.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
S2P-RA 2121 S2P-RA 102..2118 1..2017 10070 99.9 Plus
S2P.a 1958 S2P.a 41..1955 103..2017 9560 99.9 Plus
S2P.a 1958 S2P.a 1..47 1..47 220 97.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7729380..7730600 2017..797 6105 100 Minus
chr2R 21145070 chr2R 7730666..7731105 798..359 2200 100 Minus
chr2R 21145070 chr2R 7731155..7731510 360..1 1675 98.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11842104..11843324 2017..797 6105 100 Minus
2R 25286936 2R 11843390..11843829 798..359 2200 100 Minus
2R 25286936 2R 11843879..11844238 360..1 1785 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11843303..11844523 2017..797 6105 100 Minus
2R 25260384 2R 11844589..11845028 798..359 2200 100 Minus
2R 25260384 2R 11845078..11845437 360..1 1785 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 19:24:42 has no hits.

RE57384.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:25:51 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7729379..7730598 799..2018 99 <- Minus
chr2R 7730666..7731103 361..798 100 <- Minus
chr2R 7731155..7731510 1..360 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:36 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
S2P-RA 1..1527 286..1812 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:09:31 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
S2P-RA 1..1527 286..1812 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:23 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
S2P-RA 1..1527 286..1812 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:46 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
S2P-RA 1..1527 286..1812 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:31 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
S2P-RA 1..1527 286..1812 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:07 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
S2P-RA 1..2017 1..2018 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:09:31 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
S2P-RA 1..2017 1..2018 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:23 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
S2P-RA 3..2019 1..2018 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:46 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
S2P-RA 1..2017 1..2018 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:31 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
S2P-RA 3..2019 1..2018 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:51 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11843879..11844238 1..360 99   Minus
2R 11842103..11843322 799..2018 99 <- Minus
2R 11843390..11843827 361..798 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:51 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11843879..11844238 1..360 99   Minus
2R 11842103..11843322 799..2018 99 <- Minus
2R 11843390..11843827 361..798 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:25:51 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11843879..11844238 1..360 99   Minus
2R 11842103..11843322 799..2018 99 <- Minus
2R 11843390..11843827 361..798 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:23 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7730895..7731332 361..798 100 <- Minus
arm_2R 7729608..7730827 799..2018 99 <- Minus
arm_2R 7731384..7731743 1..360 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:10:51 Download gff for RE57384.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11843302..11844521 799..2018 99 <- Minus
2R 11844589..11845026 361..798 100 <- Minus
2R 11845078..11845437 1..360 99   Minus

RE57384.pep Sequence

Translation from 285 to 1811

> RE57384.pep
MDPFVFFIVLASLYGVLYFFDRFFKSCMHYPYDAFLKNTGLSINFMSLHW
HTSAFNRTLLRWGSAGNSCTRRVMITSFNVGVLVTFSLLPIGLILLIATI
FSSGEQDSSSSVSSPVGVPVQLEILLPGVNLPLEEIGYYITTLVLCLVVH
EMGHALAAVMEDVPVTGFGIKFIFCLPLAYTELSHDHLNSLRWFRKLRVL
CAGIWHNFVFAGVCYLLISTVGITMSPLYAYNQHVVVTELTRKSPLRGER
GLQVDNQITQVNGCPVNSEESWVTCLQNSLKLKPGYCVSADFVQLNDESS
AISHHSIDGQLQCCDELNPNVSCFEVVEDANGDVPVELPQHVCLNVRRTL
EEVSEHCSSGVCNEGFCLRPLIRNITAIMTFKRQNFRGEKLPPVIYVGHP
WDVTRTVEVSAFVPRYSLLKAAWPDAWLLLLKYNVVFSIGLALINAIPCF
GFDGAHITSTVIHSFLVGRVDQHAKRDIISLIITSVGSLLFALALLKVAW
LSFLRPLL*

RE57384.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13403-PA 505 GF13403-PA 1..505 1..508 2368 87.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22629-PA 508 GG22629-PA 1..508 1..508 2647 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22883-PA 519 GH22883-PA 1..519 1..508 1802 69 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
S2P-PA 508 CG8988-PA 1..508 1..508 2671 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21268-PA 518 GI21268-PA 1..518 1..508 1890 69.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10249-PA 506 GL10249-PA 1..506 1..508 2316 85.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21457-PA 506 GA21457-PA 1..506 1..508 2311 85.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20407-PA 508 GM20407-PA 1..508 1..508 2674 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25883-PA 508 GD25883-PA 1..508 1..508 2679 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20871-PA 510 GJ20871-PA 1..510 1..508 1887 70.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17918-PA 512 GK17918-PA 1..512 1..508 2077 76.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13498-PA 508 GE13498-PA 1..508 1..508 2656 98 Plus

RE57384.hyp Sequence

Translation from 285 to 1811

> RE57384.hyp
MDPFVFFIVLASLYGVLYFFDRFFKSCMHYPYDAFLKNTGLSINFMSLHW
HTSAFNRTLLRWGSAGNSCTRRVMITSFNVGVLVTFSLLPIGLILLIATI
FSSGEQDSSSSVSSPVGVPVQLEILLPGVNLPLEEIGYYITTLVLCLVVH
EMGHALAAVMEDVPVTGFGIKFIFCLPLAYTELSHDHLNSLRWFRKLRVL
CAGIWHNFVFAGVCYLLISTVGITMSPLYAYNQHVVVTELTRKSPLRGER
GLQVDNQITQVNGCPVNSEESWVTCLQNSLKLKPGYCVSADFVQLNDESS
AISHHSIDGQLQCCDELNPNVSCFEVVEDANGDVPVELPQHVCLNVRRTL
EEVSEHCSSGVCNEGFCLRPLIRNITAIMTFKRQNFRGEKLPPVIYVGHP
WDVTRTVEVSAFVPRYSLLKAAWPDAWLLLLKYNVVFSIGLALINAIPCF
GFDGAHITSTVIHSFLVGRVDQHAKRDIISLIITSVGSLLFALALLKVAW
LSFLRPLL*

RE57384.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
S2P-PA 508 CG8988-PA 1..508 1..508 2671 100 Plus