BDGP Sequence Production Resources |
Search the DGRC for RE57391
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 573 |
Well: | 91 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpL5-RF |
Protein status: | RE57391.pep: wuzgold |
Sequenced Size: | 1004 |
Gene | Date | Evidence |
---|---|---|
CG17489 | 2004-03-31 | Blastp of sequenced clone |
RpL5 | 2008-04-29 | Release 5.5 accounting |
RpL5 | 2008-08-15 | Release 5.9 accounting |
RpL5 | 2008-12-18 | 5.12 accounting |
1004 bp (1004 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012458
> RE57391.complete CTTTTTGCTAGCAATTTCCGGCGAGGGTTTCGTTAAGGTAGTCAAGAACA AGCAGTACTTTAAGAGGTACCAAGTCAAGTTCCGAAGGCGTCGCGAAGGA AAGACCGATTACTATGCCAGGAAACGCCTAACATTTCAGGACAAGAACAA GTACAACACTCCCAAGTACCGTTTGATCGTACGTTTGTCCAACAAGGACA TCACAGTACAGATCGCCTATGCTCACATCGAGGGTGATCGCGTGGTGTGC GCTGCTTATTCCCATGAGCTTCCCAAATACGGGATCCAGGTTGGATTGAC CAACTACGCTGCTGCTTACTGCACAGGCCTGCTGGTCGCCCGTCGTGTCC TTAACAAGTTGGGACTGGACTCCCTATATGCAGGATGCACTGAAGTGACT GGTGAGGAGTTCAACGTCGAGCCTGTTGATGACGGCCCAGGGGCATTCCG TTGCTTCTTGGATGTTGGACTCGCTCGTACTACAACTGGTGCCCGTGTGT TTGGCGCTATGAAGGGAGCAGTTGATGGTGGTCTAAACATACCTCACTCT GTGAAACGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTTAATGCCGA TGTGCATCGCGCTCATATATTTGGCCAGCACGTTGCAGACTATATGCGTT CTTTGGAGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTAGCCGATAC ATCAAGTTGGGCATTCGTGCTGATGATCTTGAGGATATCTATAAAAAAGC CCACCAGGCAATTCGTAACGACCCTACACACAAGGTCACCGCTAAGAAGT CTTCTGCCGTTACGAAGAAAAGGTGGAATGCTAAGAAACTCACAAACGAG CAACGGAAGACTAAGATTGCAGCTCATAAGGCAGCATATGTTGCCAAGCT GCAGTCTGAAACTGAGGCTTAAAAGTGTTCGTCACCAGCTTCAGTTTATA TTGGTGTAAAAATAAATAAACAGTTCTAATGACACCCGAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 22426858..22427297 | 727..288 | 2200 | 100 | Minus |
chr2L | 23010047 | chr2L | 22427354..22427621 | 291..24 | 1325 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 22426046..22426304 | 986..728 | 1295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 22535617..22536056 | 727..288 | 2200 | 100 | Minus |
2L | 23513712 | 2L | 22536113..22536380 | 291..24 | 1325 | 99.6 | Minus |
2L | 23513712 | 2L | 22534805..22535063 | 986..728 | 1295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 22535617..22536056 | 727..288 | 2200 | 100 | Minus |
2L | 23513712 | 2L | 22536113..22536380 | 291..24 | 1325 | 99.6 | Minus |
2L | 23513712 | 2L | 22534805..22535063 | 986..728 | 1295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
G3 | 4605 | G3 G3 4605bp | 2982..3090 | 947..837 | 117 | 63.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 22426044..22426304 | 728..988 | 99 | <- | Minus |
chr2L | 22426858..22427295 | 290..727 | 100 | <- | Minus |
chr2L | 22427356..22427619 | 26..289 | 99 | <- | Minus |
chr2L | 22427862..22427886 | 1..25 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL5-RC | 42..963 | 1..922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL5-RB | 1..900 | 24..922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL5-RA | 1..900 | 24..922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL5-RC | 42..963 | 1..922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL5-RB | 1..900 | 24..922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL5-RC | 43..1030 | 1..988 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL5-RF | 43..1030 | 1..988 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL5-RA | 82..1045 | 25..988 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL5-RC | 43..1030 | 1..988 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL5-RB | 6..32 | 1..26 | 96 | -> | Plus |
RpL5-RB | 61..1022 | 27..988 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 22534803..22535063 | 728..988 | 99 | <- | Minus |
2L | 22535617..22536054 | 290..727 | 100 | <- | Minus |
2L | 22536115..22536378 | 26..289 | 99 | <- | Minus |
2L | 22536621..22536645 | 1..25 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 22534803..22535063 | 728..988 | 99 | <- | Minus |
2L | 22535617..22536054 | 290..727 | 100 | <- | Minus |
2L | 22536115..22536378 | 26..289 | 99 | <- | Minus |
2L | 22536621..22536645 | 1..25 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 22534803..22535063 | 728..988 | 99 | <- | Minus |
2L | 22535617..22536054 | 290..727 | 100 | <- | Minus |
2L | 22536115..22536378 | 26..289 | 99 | <- | Minus |
2L | 22536621..22536645 | 1..25 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 22427535..22427795 | 728..988 | 99 | <- | Minus |
arm_2L | 22428349..22428786 | 290..727 | 100 | <- | Minus |
arm_2L | 22428847..22429110 | 26..289 | 99 | <- | Minus |
arm_2L | 22429353..22429377 | 1..25 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 22536115..22536378 | 26..289 | 99 | <- | Minus |
2L | 22536621..22536645 | 1..25 | 100 | Minus | |
2L | 22534803..22535063 | 728..988 | 99 | <- | Minus |
2L | 22535617..22536054 | 290..727 | 100 | <- | Minus |
Translation from 0 to 921
> RE57391.hyp FLLAISGEGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNK YNTPKYRLIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLT NYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFR CFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNAD VHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKA HQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKIAAHKAAYVAKL QSETEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL5-PG | 299 | CG17489-PG | 2..299 | 9..306 | 1548 | 100 | Plus |
RpL5-PH | 299 | CG17489-PH | 2..299 | 9..306 | 1548 | 100 | Plus |
RpL5-PB | 299 | CG17489-PB | 2..299 | 9..306 | 1548 | 100 | Plus |
RpL5-PA | 299 | CG17489-PA | 2..299 | 9..306 | 1548 | 100 | Plus |
Translation from 508 to 921
> RE57391.pep MKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLE EEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSA VTKKRWNAKKLTNEQRKTKIAAHKAAYVAKLQSETEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22760-PA | 308 | GF22760-PA | 172..308 | 1..137 | 712 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21448-PA | 299 | GG21448-PA | 163..299 | 1..137 | 726 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13292-PA | 858 | GH13292-PA | 722..858 | 1..137 | 616 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL5-PG | 299 | CG17489-PG | 163..299 | 1..137 | 706 | 100 | Plus |
RpL5-PH | 299 | CG17489-PH | 163..299 | 1..137 | 706 | 100 | Plus |
RpL5-PB | 299 | CG17489-PB | 163..299 | 1..137 | 706 | 100 | Plus |
RpL5-PA | 299 | CG17489-PA | 163..299 | 1..137 | 706 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17484-PA | 756 | GI17484-PA | 621..756 | 1..137 | 590 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21177-PA | 299 | GL21177-PA | 163..299 | 1..137 | 710 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28757-PA | 299 | GA28757-PA | 163..299 | 1..137 | 710 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26730-PA | 318 | GM26730-PA | 182..318 | 1..137 | 727 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15046-PA | 992 | GJ15046-PA | 856..992 | 1..137 | 640 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24660-PA | 299 | GK24660-PA | 163..299 | 1..137 | 701 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\yip6-PA | 299 | GE15279-PA | 163..299 | 1..137 | 725 | 100 | Plus |