Clone RE57391 Report

Search the DGRC for RE57391

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:573
Well:91
Vector:pFlc-1
Associated Gene/TranscriptRpL5-RF
Protein status:RE57391.pep: wuzgold
Sequenced Size:1004

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17489 2004-03-31 Blastp of sequenced clone
RpL5 2008-04-29 Release 5.5 accounting
RpL5 2008-08-15 Release 5.9 accounting
RpL5 2008-12-18 5.12 accounting

Clone Sequence Records

RE57391.complete Sequence

1004 bp (1004 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012458

> RE57391.complete
CTTTTTGCTAGCAATTTCCGGCGAGGGTTTCGTTAAGGTAGTCAAGAACA
AGCAGTACTTTAAGAGGTACCAAGTCAAGTTCCGAAGGCGTCGCGAAGGA
AAGACCGATTACTATGCCAGGAAACGCCTAACATTTCAGGACAAGAACAA
GTACAACACTCCCAAGTACCGTTTGATCGTACGTTTGTCCAACAAGGACA
TCACAGTACAGATCGCCTATGCTCACATCGAGGGTGATCGCGTGGTGTGC
GCTGCTTATTCCCATGAGCTTCCCAAATACGGGATCCAGGTTGGATTGAC
CAACTACGCTGCTGCTTACTGCACAGGCCTGCTGGTCGCCCGTCGTGTCC
TTAACAAGTTGGGACTGGACTCCCTATATGCAGGATGCACTGAAGTGACT
GGTGAGGAGTTCAACGTCGAGCCTGTTGATGACGGCCCAGGGGCATTCCG
TTGCTTCTTGGATGTTGGACTCGCTCGTACTACAACTGGTGCCCGTGTGT
TTGGCGCTATGAAGGGAGCAGTTGATGGTGGTCTAAACATACCTCACTCT
GTGAAACGCTTTCCTGGATACTCTGCTGAAACCAAGAGCTTTAATGCCGA
TGTGCATCGCGCTCATATATTTGGCCAGCACGTTGCAGACTATATGCGTT
CTTTGGAGGAGGAGGATGAGGAGAGCTTCAAAAGGCAGTTTAGCCGATAC
ATCAAGTTGGGCATTCGTGCTGATGATCTTGAGGATATCTATAAAAAAGC
CCACCAGGCAATTCGTAACGACCCTACACACAAGGTCACCGCTAAGAAGT
CTTCTGCCGTTACGAAGAAAAGGTGGAATGCTAAGAAACTCACAAACGAG
CAACGGAAGACTAAGATTGCAGCTCATAAGGCAGCATATGTTGCCAAGCT
GCAGTCTGAAACTGAGGCTTAAAAGTGTTCGTCACCAGCTTCAGTTTATA
TTGGTGTAAAAATAAATAAACAGTTCTAATGACACCCGAAAAAAAAAAAA
AAAA

RE57391.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-RF 1032 RpL5-RF 43..1028 1..986 4915 99.8 Plus
RpL5.a 1123 RpL5.a 82..1043 25..986 4795 99.8 Plus
RpL5-RA 1479 RpL5-RA 164..1125 25..986 4795 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22426858..22427297 727..288 2200 100 Minus
chr2L 23010047 chr2L 22427354..22427621 291..24 1325 99.6 Minus
chr2L 23010047 chr2L 22426046..22426304 986..728 1295 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22535617..22536056 727..288 2200 100 Minus
2L 23513712 2L 22536113..22536380 291..24 1325 99.6 Minus
2L 23513712 2L 22534805..22535063 986..728 1295 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22535617..22536056 727..288 2200 100 Minus
2L 23513712 2L 22536113..22536380 291..24 1325 99.6 Minus
2L 23513712 2L 22534805..22535063 986..728 1295 100 Minus
Blast to na_te.dros performed 2019-03-16 20:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 2982..3090 947..837 117 63.5 Minus

RE57391.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:21:49 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22426044..22426304 728..988 99 <- Minus
chr2L 22426858..22427295 290..727 100 <- Minus
chr2L 22427356..22427619 26..289 99 <- Minus
chr2L 22427862..22427886 1..25 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:37 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RC 42..963 1..922 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:52 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 1..900 24..922 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:45 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RA 1..900 24..922 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:40 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RC 42..963 1..922 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:42 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 1..900 24..922 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:45:42 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RC 43..1030 1..988 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:52 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RF 43..1030 1..988 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:45 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RA 82..1045 25..988 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:40 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RC 43..1030 1..988 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:42 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
RpL5-RB 6..32 1..26 96 -> Plus
RpL5-RB 61..1022 27..988 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:21:49 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22534803..22535063 728..988 99 <- Minus
2L 22535617..22536054 290..727 100 <- Minus
2L 22536115..22536378 26..289 99 <- Minus
2L 22536621..22536645 1..25 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:21:49 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22534803..22535063 728..988 99 <- Minus
2L 22535617..22536054 290..727 100 <- Minus
2L 22536115..22536378 26..289 99 <- Minus
2L 22536621..22536645 1..25 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:21:49 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22534803..22535063 728..988 99 <- Minus
2L 22535617..22536054 290..727 100 <- Minus
2L 22536115..22536378 26..289 99 <- Minus
2L 22536621..22536645 1..25 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:45 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22427535..22427795 728..988 99 <- Minus
arm_2L 22428349..22428786 290..727 100 <- Minus
arm_2L 22428847..22429110 26..289 99 <- Minus
arm_2L 22429353..22429377 1..25 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:04 Download gff for RE57391.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22536115..22536378 26..289 99 <- Minus
2L 22536621..22536645 1..25 100   Minus
2L 22534803..22535063 728..988 99 <- Minus
2L 22535617..22536054 290..727 100 <- Minus

RE57391.hyp Sequence

Translation from 0 to 921

> RE57391.hyp
FLLAISGEGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNK
YNTPKYRLIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLT
NYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFR
CFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNAD
VHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKA
HQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKIAAHKAAYVAKL
QSETEA*

RE57391.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-PG 299 CG17489-PG 2..299 9..306 1548 100 Plus
RpL5-PH 299 CG17489-PH 2..299 9..306 1548 100 Plus
RpL5-PB 299 CG17489-PB 2..299 9..306 1548 100 Plus
RpL5-PA 299 CG17489-PA 2..299 9..306 1548 100 Plus

RE57391.pep Sequence

Translation from 508 to 921

> RE57391.pep
MKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLE
EEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSA
VTKKRWNAKKLTNEQRKTKIAAHKAAYVAKLQSETEA*

RE57391.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22760-PA 308 GF22760-PA 172..308 1..137 712 96.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21448-PA 299 GG21448-PA 163..299 1..137 726 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13292-PA 858 GH13292-PA 722..858 1..137 616 88.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
RpL5-PG 299 CG17489-PG 163..299 1..137 706 100 Plus
RpL5-PH 299 CG17489-PH 163..299 1..137 706 100 Plus
RpL5-PB 299 CG17489-PB 163..299 1..137 706 100 Plus
RpL5-PA 299 CG17489-PA 163..299 1..137 706 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17484-PA 756 GI17484-PA 621..756 1..137 590 89.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21177-PA 299 GL21177-PA 163..299 1..137 710 97.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28757-PA 299 GA28757-PA 163..299 1..137 710 97.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26730-PA 318 GM26730-PA 182..318 1..137 727 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15046-PA 992 GJ15046-PA 856..992 1..137 640 91.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24660-PA 299 GK24660-PA 163..299 1..137 701 94.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\yip6-PA 299 GE15279-PA 163..299 1..137 725 100 Plus