BDGP Sequence Production Resources |
Search the DGRC for RE57443
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 574 |
Well: | 43 |
Vector: | pFlc-1 |
Associated Gene/Transcript | NijA-RA |
Protein status: | RE57443.pep: gold |
Preliminary Size: | 591 |
Sequenced Size: | 1146 |
Gene | Date | Evidence |
---|---|---|
CG6449 | 2001-12-14 | Blastp of sequenced clone |
CG6449 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6449 | 2003-01-01 | Sim4 clustering to Release 3 |
NijA | 2008-04-29 | Release 5.5 accounting |
NijA | 2008-08-15 | Release 5.9 accounting |
NijA | 2008-12-18 | 5.12 accounting |
1146 bp (1146 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071530
> RE57443.complete CAGTTGTCCGAGAAATAGCGTGCCGAGCGGTCGCAAATTGCGCACGAGTT TTTAAACAAAAGCCAAAAAAAAAACAAAATAATAAATAAGCAACAGAGTG ATTTGCCCGAGAAGGTCTAGATAAAGAGATACAAAGAAATTCTTAAGGAA TCTTGGCATTGAATTGCTCATTTGTAATTGCCCAAAGACATATTAATTGC AATTAATTAATTAATTAATTCAATCGTAAAATGAGTAACCTAGAGCATAT TACGCTGGAAATGGATAAAGTGCCACTAGGAGATAATAAAACTTTGGAAA ATATCAGCAAACACAGCTATGGCGGTGCAATCGACGGACGGACACGTAAT ACTCTTCGAGTGCCCAGAGCAGTTCCAGAAACCGATGATGATGACAACGA CGATCGTCCCTTTGTTAAAGATGGCAATGATAATCCCGGCGTGGATGACG GTCTTTTTTCAACTGTTGGAGGCAACGGAGGCAACGGCGGCAATGTGAAT GTAAACGTTCCCAATGGAGGAAGACGACCCAGTTTCTCCTTTCCGGGATA CAATGGACCCGGTTTTGTGACGATCAACGGCGTGGAGACACCCATACCCG ATGTGAATGCATATCAGCACAAGAAGACCCTGGCTCAGGGAATGATGGAC CTGGCACTTCTCTCCGCGAATGCAAATCAATTGCGTTATGTTCTGGAGAC GAGCTCACAACATCCTTACTTTTATCCCAGTCTGCTGTTCATCTCACTCA GCATTATATTCCAGATTGCTGTGGGCGTGGGCCTTATATTGAATGGCCAG TATAACATCAAAAACGGTCACGATATCTGCCGGGCGAACAGGATCAATAA TTATACAGTTAGCGGCATTTTTATAGTCACTGTGGTCAATGTTCTAATAT CAGCCTTTACTGTGGACAGAGATACTGTGCCTGCTTTACCCGCCAATACA ACATAGTTTAACTTGTATTTTAAATAGACTTTAGTATTATGAACACACAG ATGCATCTTTAGATAATACTCACATTGTTCAAACCTTGTTAAATTTCACT CAGCTACTCATTTTTCTAAACGCAACAATGAATTGTGATAAATAAAATCC CACGAGCATTTCTCGCTTATTTAAATAACTGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
NijA-RA | 1201 | NijA-RA | 1..1134 | 1..1134 | 5640 | 99.8 | Plus |
NijA-RB | 1213 | NijA-RB | 309..1146 | 297..1134 | 4160 | 99.7 | Plus |
NijA-RC | 1165 | NijA-RC | 383..1098 | 419..1134 | 3565 | 99.8 | Plus |
NijA-RB | 1213 | NijA-RB | 1..297 | 1..297 | 1485 | 100 | Plus |
NijA-RC | 1165 | NijA-RC | 1..297 | 1..297 | 1485 | 100 | Plus |
NijA-RC | 1165 | NijA-RC | 309..384 | 297..372 | 380 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 10686303..10686696 | 764..371 | 1850 | 98 | Minus |
chr3L | 24539361 | chr3L | 10685649..10686020 | 1128..758 | 1690 | 97.6 | Minus |
chr3L | 24539361 | chr3L | 10687831..10688136 | 297..1 | 1250 | 95.4 | Minus |
chr3L | 24539361 | chr3L | 10686911..10686987 | 372..296 | 370 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 10695024..10695417 | 764..371 | 1955 | 99.7 | Minus |
3L | 28110227 | 3L | 10694357..10694733 | 1134..758 | 1855 | 99.5 | Minus |
3L | 28110227 | 3L | 10696578..10696874 | 297..1 | 1485 | 100 | Minus |
3L | 28110227 | 3L | 10695629..10695705 | 372..296 | 385 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 10688124..10688517 | 764..371 | 1955 | 99.7 | Minus |
3L | 28103327 | 3L | 10687457..10687833 | 1134..758 | 1855 | 99.4 | Minus |
3L | 28103327 | 3L | 10689678..10689974 | 297..1 | 1485 | 100 | Minus |
3L | 28103327 | 3L | 10688729..10688805 | 372..296 | 385 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 6416..6628 | 49..268 | 155 | 57 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 6583..6636 | 93..39 | 137 | 74.5 | Minus |
412 | 7567 | 412 412 7567bp | 1732..1793 | 36..97 | 112 | 64.5 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1388..1425 | 55..93 | 111 | 79.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 10685646..10686013 | 765..1131 | 97 | <- | Minus |
chr3L | 10686303..10686694 | 373..764 | 97 | <- | Minus |
chr3L | 10686911..10686986 | 297..372 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NijA-RA | 1..726 | 231..956 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NijA-RA | 1..726 | 231..956 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NijA-RA | 1..726 | 231..956 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NijA-RA | 1..726 | 231..956 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NijA-RA | 1..726 | 231..956 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NijA-RA | 1..1131 | 1..1131 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NijA-RA | 1..1131 | 1..1131 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NijA-RA | 4..1134 | 1..1131 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NijA-RA | 1..1131 | 1..1131 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
NijA-RA | 4..1134 | 1..1131 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 10695629..10695704 | 297..372 | 100 | <- | Minus |
3L | 10696579..10696874 | 1..296 | 100 | Minus | |
3L | 10694360..10694726 | 765..1131 | 99 | <- | Minus |
3L | 10695024..10695415 | 373..764 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 10695629..10695704 | 297..372 | 100 | <- | Minus |
3L | 10696579..10696874 | 1..296 | 100 | Minus | |
3L | 10694360..10694726 | 765..1131 | 99 | <- | Minus |
3L | 10695024..10695415 | 373..764 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 10695629..10695704 | 297..372 | 100 | <- | Minus |
3L | 10696579..10696874 | 1..296 | 100 | Minus | |
3L | 10694360..10694726 | 765..1131 | 99 | <- | Minus |
3L | 10695024..10695415 | 373..764 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 10687460..10687826 | 765..1131 | 99 | <- | Minus |
arm_3L | 10688124..10688515 | 373..764 | 99 | <- | Minus |
arm_3L | 10688729..10688804 | 297..372 | 100 | <- | Minus |
arm_3L | 10689679..10689974 | 1..296 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 10687460..10687826 | 765..1131 | 99 | <- | Minus |
3L | 10688124..10688515 | 373..764 | 99 | <- | Minus |
3L | 10688729..10688804 | 297..372 | 100 | <- | Minus |
3L | 10689679..10689974 | 1..296 | 100 | Minus |
Translation from 230 to 955
> RE57443.pep MSNLEHITLEMDKVPLGDNKTLENISKHSYGGAIDGRTRNTLRVPRAVPE TDDDDNDDRPFVKDGNDNPGVDDGLFSTVGGNGGNGGNVNVNVPNGGRRP SFSFPGYNGPGFVTINGVETPIPDVNAYQHKKTLAQGMMDLALLSANANQ LRYVLETSSQHPYFYPSLLFISLSIIFQIAVGVGLILNGQYNIKNGHDIC RANRINNYTVSGIFIVTVVNVLISAFTVDRDTVPALPANTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23821-PA | 231 | GF23821-PA | 1..230 | 1..234 | 829 | 78 | Plus |
Dana\GF17117-PA | 212 | GF17117-PA | 11..75 | 115..179 | 181 | 52.3 | Plus |
Dana\GF23648-PA | 179 | GF23648-PA | 74..172 | 126..227 | 164 | 37.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13962-PA | 235 | GG13962-PA | 1..235 | 1..241 | 871 | 80.1 | Plus |
Dere\GG16012-PA | 180 | GG16012-PA | 11..173 | 66..227 | 205 | 30.1 | Plus |
Dere\GG19192-PA | 203 | GG19192-PA | 5..147 | 124..234 | 204 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15570-PA | 228 | GH15570-PA | 1..225 | 1..233 | 768 | 71.2 | Plus |
Dgri\GH21383-PA | 222 | GH21383-PA | 5..147 | 124..234 | 202 | 33.6 | Plus |
Dgri\GH14600-PA | 174 | GH14600-PA | 69..167 | 126..227 | 160 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
NijA-PA | 241 | CG6449-PA | 1..241 | 1..241 | 1266 | 100 | Plus |
NijA-PB | 245 | CG6449-PB | 1..245 | 1..241 | 1251 | 98.4 | Plus |
NijA-PD | 225 | CG6449-PD | 1..225 | 1..241 | 1149 | 93.4 | Plus |
NijA-PC | 229 | CG6449-PC | 1..229 | 1..241 | 1134 | 91.8 | Plus |
NijC-PD | 138 | CG14394-PD | 4..127 | 111..234 | 254 | 41.1 | Plus |
NijC-PF | 133 | CG14394-PF | 12..122 | 124..234 | 247 | 43.2 | Plus |
NijC-PB | 135 | CG14394-PB | 4..126 | 111..237 | 227 | 38.6 | Plus |
NijC-PG | 130 | CG14394-PG | 12..121 | 124..237 | 220 | 40.4 | Plus |
NijC-PC | 136 | CG14394-PC | 4..122 | 111..226 | 206 | 40.3 | Plus |
NijC-PE | 131 | CG14394-PE | 12..117 | 124..226 | 199 | 42.5 | Plus |
NijB-PA | 181 | CG11637-PA | 75..173 | 126..227 | 190 | 37.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16845-PA | 228 | GI16845-PA | 1..225 | 1..234 | 747 | 70.8 | Plus |
Dmoj\GI13486-PA | 170 | GI13486-PA | 67..163 | 128..227 | 201 | 40.8 | Plus |
Dmoj\GI10503-PA | 222 | GI10503-PA | 5..60 | 124..179 | 172 | 55.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20739-PA | 243 | GL20739-PA | 1..243 | 1..235 | 775 | 74.8 | Plus |
Dper\GL24423-PA | 181 | GL24423-PA | 28..170 | 124..234 | 199 | 33.6 | Plus |
Dper\GL24889-PA | 173 | GL24889-PA | 68..166 | 126..227 | 156 | 38.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19603-PA | 245 | GA19603-PA | 1..245 | 1..235 | 777 | 74.2 | Plus |
Dpse\GA12950-PE | 141 | GA12950-PE | 11..130 | 115..234 | 248 | 40.8 | Plus |
Dpse\GA12950-PH | 126 | GA12950-PH | 5..115 | 124..234 | 239 | 42.3 | Plus |
Dpse\GA12950-PF | 126 | GA12950-PF | 5..116 | 124..239 | 213 | 38.8 | Plus |
Dpse\GA12950-PC | 126 | GA12950-PC | 5..110 | 124..226 | 184 | 42.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24800-PA | 182 | GM24800-PA | 1..117 | 1..118 | 431 | 84.7 | Plus |
Dsec\GM24800-PA | 182 | GM24800-PA | 100..182 | 162..241 | 269 | 72.3 | Plus |
Dsec\GM24058-PA | 170 | GM24058-PA | 2..159 | 109..234 | 214 | 32.3 | Plus |
Dsec\GM15001-PA | 177 | GM15001-PA | 75..173 | 126..227 | 193 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12851-PA | 246 | GD12851-PA | 1..246 | 1..241 | 1024 | 91.5 | Plus |
Dsim\GD18856-PA | 209 | GD18856-PA | 2..146 | 109..221 | 191 | 32.4 | Plus |
Dsim\GD14779-PA | 90 | GD14779-PA | 1..86 | 139..227 | 154 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12595-PA | 230 | GJ12595-PA | 1..227 | 1..235 | 718 | 66.2 | Plus |
Dvir\GJ23184-PA | 158 | GJ23184-PA | 5..147 | 124..234 | 203 | 33.6 | Plus |
Dvir\GJ11847-PA | 171 | GJ11847-PA | 68..164 | 128..227 | 154 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17290-PA | 226 | GK17290-PA | 1..217 | 1..228 | 770 | 72.6 | Plus |
Dwil\GK20451-PA | 243 | GK20451-PA | 128..238 | 114..227 | 218 | 40.4 | Plus |
Dwil\GK13730-PA | 235 | GK13730-PA | 5..147 | 124..234 | 200 | 33.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20261-PA | 231 | GE20261-PA | 1..215 | 1..226 | 802 | 77.9 | Plus |
Dyak\GE14598-PA | 61 | GE14598-PA | 3..61 | 94..156 | 244 | 79.4 | Plus |
Dyak\GE26216-PA | 232 | GE26216-PA | 5..147 | 124..234 | 204 | 33.6 | Plus |
Dyak\GE19577-PA | 180 | GE19577-PA | 75..172 | 127..227 | 189 | 38.2 | Plus |
Dyak\GE19573-PA | 180 | GE19573-PA | 75..172 | 127..227 | 189 | 38.2 | Plus |
Translation from 230 to 955
> RE57443.hyp MSNLEHITLEMDKVPLGDNKTLENISKHSYGGAIDGRTRNTLRVPRAVPE TDDDDNDDRPFVKDGNDNPGVDDGLFSTVGGNGGNGGNVNVNVPNGGRRP SFSFPGYNGPGFVTINGVETPIPDVNAYQHKKTLAQGMMDLALLSANANQ LRYVLETSSQHPYFYPSLLFISLSIIFQIAVGVGLILNGQYNIKNGHDIC RANRINNYTVSGIFIVTVVNVLISAFTVDRDTVPALPANTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
NijA-PA | 241 | CG6449-PA | 1..241 | 1..241 | 1266 | 100 | Plus |
NijA-PB | 245 | CG6449-PB | 1..245 | 1..241 | 1251 | 98.4 | Plus |
NijA-PD | 225 | CG6449-PD | 1..225 | 1..241 | 1149 | 93.4 | Plus |
NijA-PC | 229 | CG6449-PC | 1..229 | 1..241 | 1134 | 91.8 | Plus |
NijC-PD | 138 | CG14394-PD | 4..127 | 111..234 | 254 | 41.1 | Plus |