Clone RE57454 Report

Search the DGRC for RE57454

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:574
Well:54
Vector:pFlc-1
Associated Gene/TranscriptCG13102-RA
Protein status:RE57454.pep: gold
Preliminary Size:447
Sequenced Size:1846

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13102 2002-01-01 Sim4 clustering to Release 2
CG13102 2002-05-30 Blastp of sequenced clone
CG13102 2003-01-01 Sim4 clustering to Release 3
CG13102 2008-04-29 Release 5.5 accounting
CG13102 2008-08-15 Release 5.9 accounting
CG13102 2008-12-18 5.12 accounting

Clone Sequence Records

RE57454.complete Sequence

1846 bp (1846 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118397

> RE57454.complete
AGTTTAAAGCGAATCGACATCTTGCAAAGTTGTACTACAGTTAAGTGTGA
AGTAAAAATATTTAAACCAAAATGTATATGAAAGCTTTAATAGTCAGCAT
ACTTGTGGCCTTTGTGTGTGTGCAAATTGCTGATTCCCTGAAGTGTTACA
CCTGCGTAACGCCAAAGGACTGCAAGAGTCCCAAGAAAGTCACCTGCACG
AATGCGGCTGCGAATGAGACTAGTTACTACCTGGGTGTCTATCATCAGAA
TGTTGGCAACCTAACCAGCACGCGATTCGATTGCCTGGCTCTGAAGTACA
ACTGGAATAACGATGTGATCCATCAGCTCCATGGCTGTGTGCATCCAAAT
GTTGGAGCCTGCAGCTTAGCACTTAAGCCGGCCTATGCTCACTACAATAA
GACCTGGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCG
GAAAGATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTC
TTGCTGGTCAAGATGTATGCCTAGTGTGACTATTAATAAATATGAGCTAG
GAGCTATGATATTTTATATTTGATATTTTTTATTGTACCGTCAATTTTAG
TAATATCATAATTTCATTTGTAGATTATGTAGGCCATGTTTATTCGGTCG
AGCAGTTAACTAGGAGTGGGTATCACTAATCGATGGCGCTTGAATGGACG
GTGGAGTGACGAAAGTTGTTGGGCGCTTCTCTAGGAGGAGCCCATTGGGT
TGACGGCGTTTGTCTGCAGGTTCTTGAGCAGCATCTGCAGCCACTGCTTG
GTGCACGTGTCATGTTGCACGAGCGACGTGAAGGTGCCGTCACGCAGCAG
ATCCGGCAGACACACTCTAAGTGCACTGCGAGCGCGCGCATTTTCCGTAA
GTAGTAGATAGCAGCGCACCACATGCTTCAGCACCCGGAGGCATGGAAAC
TTCAACATATGGATGACCATTTTGCCCAGGGTGATGGCCACCTGCGAGAA
GCGATCGTGGTTCTCGCAAATGTACGTCAGACCCATCTCATCGAGCAGTA
TCTTCTCAAGGATTGAAGTGGCCGCGATCTTGGTCAGCTTCGATCCCCTG
ACCATATTGGTCAGACAGTGAGGCACGACCTCGCTCCATATCAGGAAGAT
GAGGACCTCCGTATCACCGGTCTCGGCCAGAGCATTAATCACGCCCAGCG
TGGTCAGGCGCAGCTGCTCGAAGGGCCTGCTCTTGAACGTGGTCGACAAG
AAGGGGTACAAGTACATCGGTATCTGGTCCCGCAGGAAGGCCGGGCGAGT
CTCCGGATGCGAGGCGACGCACTGTAGCAAAGTCAGGGCGTAGCACACGC
GGTTCGACTGGTTGGCCTTCAAAACGGGCGTCGTTATTATGGGGTATATG
TTGACGATCTCCTGCAGCAGGGTGCAGGTGGTACCGACGCTTTTCCACAG
CATGGGGGCCAGGTCCGCATAGGTGTTCTTGCTCAGCTCCAGCAGAGCGG
TCTCCCGCGTGGCAGGATAGGCCAGCTCGATGATCAACTGGTACACCTTC
TCCCGCTCGGCCTGCTGCTGGGGACTCATTACCGGACTTGGTTCCGCACT
CATCGCAAAGCTGGTTTTTTTTCGCGTTAGCTTGCAAAGATCTAGTAGCT
TGGAAAGATCTGGCTCCGGAATTTCGACGGACGATTGAGAAACGTGGTTT
CGAGTTGGCGTCTATTGTGGTTATCGATATAAGCTTCAAGCGAGAAAGGA
CCGAAAGCACGTGGCCGAACAATGTGGCCAGAGCCGAGGAACGCACGAAT
GCCATAAATTAATAAATAATTTCTTGTTCGAAAAAAAAAAAAAAAA

RE57454.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102.a 1984 CG13102.a 153..1984 1..1832 9160 100 Plus
CG13102-RA 1833 CG13102-RA 2..1833 1..1832 9160 100 Plus
CG9573-RA 1186 CG9573-RA 1..1186 1751..566 5930 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9011524..9013047 307..1830 7605 99.9 Plus
chrX 22417052 chrX 19528235..19528606 1548..1177 1020 84.9 Minus
chr2L 23010047 chr2L 9011282..9011459 129..306 890 100 Plus
chr2L 23010047 chr2L 9011091..9011223 1..133 650 99.2 Plus
chrX 22417052 chrX 19528725..19528882 1133..976 340 81 Minus
chrX 22417052 chrX 19529092..19529210 885..767 280 82.4 Minus
chrX 22417052 chrX 19528938..19529025 977..890 215 83 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9012626..9014151 307..1832 7630 100 Plus
X 23542271 X 19639444..19639815 1548..1177 1020 84.9 Minus
2L 23513712 2L 9012384..9012561 129..306 890 100 Plus
2L 23513712 2L 9012193..9012325 1..133 650 99.2 Plus
X 23542271 X 19639934..19640091 1133..976 340 81 Minus
X 23542271 X 19640301..19640419 885..767 280 82.4 Minus
X 23542271 X 19640147..19640234 977..890 215 83 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9012626..9014151 307..1832 7630 100 Plus
2L 23513712 2L 9012384..9012561 129..306 890 100 Plus
X 23527363 X 19647623..19647913 1467..1177 870 86.5 Minus
2L 23513712 2L 9012193..9012325 1..133 650 99.2 Plus
X 23527363 X 19648032..19648189 1133..976 340 81 Minus
X 23527363 X 19648399..19648517 885..767 280 82.3 Minus
X 23527363 X 19648245..19648332 977..890 215 82.9 Minus
X 23527363 X 19647542..19647614 1548..1476 215 86.3 Minus
Blast to na_te.dros performed 2019-03-16 05:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 681..784 658..555 122 63.6 Minus

RE57454.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:26:31 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9011091..9011219 1..129 100 -> Plus
chr2L 9011283..9011459 130..306 100 -> Plus
chr2L 9011524..9013047 307..1830 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:40 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 1..453 72..524 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:09 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 1..453 72..524 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:10 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 1..453 72..524 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:27:42 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 1..453 72..524 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:02:59 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 1..453 72..524 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:08:02 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 1..1830 1..1830 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:09 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
CG9573-RA 1..1186 566..1751 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:10 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RB 6..1835 1..1830 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:27:43 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RA 1..1830 1..1830 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:02:59 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RB 6..1835 1..1830 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:26:31 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9012193..9012321 1..129 100 -> Plus
2L 9012385..9012561 130..306 100 -> Plus
2L 9012626..9014149 307..1830 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:26:31 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9012193..9012321 1..129 100 -> Plus
2L 9012385..9012561 130..306 100 -> Plus
2L 9012626..9014149 307..1830 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:26:31 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9012193..9012321 1..129 100 -> Plus
2L 9012385..9012561 130..306 100 -> Plus
2L 9012626..9014149 307..1830 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:10 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9012193..9012321 1..129 100 -> Plus
arm_2L 9012385..9012561 130..306 100 -> Plus
arm_2L 9012626..9014149 307..1830 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:15 Download gff for RE57454.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9012626..9014149 307..1830 100   Plus
2L 9012193..9012321 1..129 100 -> Plus
2L 9012385..9012561 130..306 100 -> Plus

RE57454.hyp Sequence

Translation from 71 to 523

> RE57454.hyp
MYMKALIVSILVAFVCVQIADSLKCYTCVTPKDCKSPKKVTCTNAAANET
SYYLGVYHQNVGNLTSTRFDCLALKYNWNNDVIHQLHGCVHPNVGACSLA
LKPAYAHYNKTWCLTCSGDKCNKNPAGKMSSSTIAIASSVLGLLLVKMYA
*

RE57454.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-PB 150 CG13102-PB 1..150 1..150 813 100 Plus
CG13102-PA 150 CG13102-PA 1..150 1..150 813 100 Plus
CG9568-PA 150 CG9568-PA 1..148 1..148 244 37.7 Plus

RE57454.pep Sequence

Translation from 71 to 523

> RE57454.pep
MYMKALIVSILVAFVCVQIADSLKCYTCVTPKDCKSPKKVTCTNAAANET
SYYLGVYHQNVGNLTSTRFDCLALKYNWNNDVIHQLHGCVHPNVGACSLA
LKPAYAHYNKTWCLTCSGDKCNKNPAGKMSSSTIAIASSVLGLLLVKMYA
*

RE57454.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22701-PA 129 GF22701-PA 1..128 1..128 547 79.7 Plus
Dana\GF22697-PA 150 GF22697-PA 1..138 1..139 222 38.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25328-PA 150 GG25328-PA 1..150 1..150 691 86.7 Plus
Dere\GG25327-PA 150 GG25327-PA 1..148 1..148 218 38.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13260-PA 152 GH13260-PA 1..152 1..150 421 54.6 Plus
Dgri\GH13259-PA 150 GH13259-PA 1..144 1..148 247 37.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13102-PB 150 CG13102-PB 1..150 1..150 813 100 Plus
CG13102-PA 150 CG13102-PA 1..150 1..150 813 100 Plus
CG9568-PA 150 CG9568-PA 1..148 1..148 244 37.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17459-PA 152 GI17459-PA 1..152 1..150 423 57.2 Plus
Dmoj\GI17458-PA 146 GI17458-PA 17..146 23..150 310 47.7 Plus
Dmoj\GI17456-PA 152 GI17456-PA 1..151 1..149 251 36.4 Plus
Dmoj\GI17457-PA 153 GI17457-PA 1..152 1..149 224 34.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26240-PA 150 GL26240-PA 1..150 1..150 580 70 Plus
Dper\GL26239-PA 153 GL26239-PA 1..153 1..150 240 37.2 Plus
Dper\GL11397-PA 165 GL11397-PA 1..163 1..148 227 36.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12047-PA 150 GA12047-PA 1..150 1..150 580 70 Plus
Dpse\GA28092-PA 153 GA28092-PA 1..153 1..150 239 37.2 Plus
Dpse\GA24709-PA 162 GA24709-PA 1..160 4..148 220 36.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17370-PA 150 GM17370-PA 1..150 1..150 723 91.3 Plus
Dsec\GM17359-PA 150 GM17359-PA 1..148 1..148 223 37.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23583-PA 150 GD23583-PA 1..150 1..150 716 90.7 Plus
Dsim\GD23582-PA 150 GD23582-PA 1..148 1..148 221 37.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14106-PA 153 GJ14106-PA 1..153 1..150 536 64.7 Plus
Dvir\GJ14382-PA 153 GJ14382-PA 1..151 1..148 272 38.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23997-PA 151 GK23997-PA 1..151 1..150 557 68.9 Plus
Dwil\GK23996-PA 152 GK23996-PA 1..150 1..148 259 41.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18822-PA 150 GE18822-PA 1..150 1..150 739 94 Plus
Dyak\GE18821-PA 150 GE18821-PA 1..147 1..147 225 38.7 Plus