BDGP Sequence Production Resources |
Search the DGRC for RE57454
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 574 |
Well: | 54 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13102-RA |
Protein status: | RE57454.pep: gold |
Preliminary Size: | 447 |
Sequenced Size: | 1846 |
Gene | Date | Evidence |
---|---|---|
CG13102 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13102 | 2002-05-30 | Blastp of sequenced clone |
CG13102 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13102 | 2008-04-29 | Release 5.5 accounting |
CG13102 | 2008-08-15 | Release 5.9 accounting |
CG13102 | 2008-12-18 | 5.12 accounting |
1846 bp (1846 high quality bases) assembled on 2002-05-30
GenBank Submission: AY118397
> RE57454.complete AGTTTAAAGCGAATCGACATCTTGCAAAGTTGTACTACAGTTAAGTGTGA AGTAAAAATATTTAAACCAAAATGTATATGAAAGCTTTAATAGTCAGCAT ACTTGTGGCCTTTGTGTGTGTGCAAATTGCTGATTCCCTGAAGTGTTACA CCTGCGTAACGCCAAAGGACTGCAAGAGTCCCAAGAAAGTCACCTGCACG AATGCGGCTGCGAATGAGACTAGTTACTACCTGGGTGTCTATCATCAGAA TGTTGGCAACCTAACCAGCACGCGATTCGATTGCCTGGCTCTGAAGTACA ACTGGAATAACGATGTGATCCATCAGCTCCATGGCTGTGTGCATCCAAAT GTTGGAGCCTGCAGCTTAGCACTTAAGCCGGCCTATGCTCACTACAATAA GACCTGGTGTCTCACCTGTTCGGGCGACAAGTGCAACAAGAATCCGGCCG GAAAGATGAGCAGCAGCACTATTGCCATCGCGTCTAGCGTTCTGGGTCTC TTGCTGGTCAAGATGTATGCCTAGTGTGACTATTAATAAATATGAGCTAG GAGCTATGATATTTTATATTTGATATTTTTTATTGTACCGTCAATTTTAG TAATATCATAATTTCATTTGTAGATTATGTAGGCCATGTTTATTCGGTCG AGCAGTTAACTAGGAGTGGGTATCACTAATCGATGGCGCTTGAATGGACG GTGGAGTGACGAAAGTTGTTGGGCGCTTCTCTAGGAGGAGCCCATTGGGT TGACGGCGTTTGTCTGCAGGTTCTTGAGCAGCATCTGCAGCCACTGCTTG GTGCACGTGTCATGTTGCACGAGCGACGTGAAGGTGCCGTCACGCAGCAG ATCCGGCAGACACACTCTAAGTGCACTGCGAGCGCGCGCATTTTCCGTAA GTAGTAGATAGCAGCGCACCACATGCTTCAGCACCCGGAGGCATGGAAAC TTCAACATATGGATGACCATTTTGCCCAGGGTGATGGCCACCTGCGAGAA GCGATCGTGGTTCTCGCAAATGTACGTCAGACCCATCTCATCGAGCAGTA TCTTCTCAAGGATTGAAGTGGCCGCGATCTTGGTCAGCTTCGATCCCCTG ACCATATTGGTCAGACAGTGAGGCACGACCTCGCTCCATATCAGGAAGAT GAGGACCTCCGTATCACCGGTCTCGGCCAGAGCATTAATCACGCCCAGCG TGGTCAGGCGCAGCTGCTCGAAGGGCCTGCTCTTGAACGTGGTCGACAAG AAGGGGTACAAGTACATCGGTATCTGGTCCCGCAGGAAGGCCGGGCGAGT CTCCGGATGCGAGGCGACGCACTGTAGCAAAGTCAGGGCGTAGCACACGC GGTTCGACTGGTTGGCCTTCAAAACGGGCGTCGTTATTATGGGGTATATG TTGACGATCTCCTGCAGCAGGGTGCAGGTGGTACCGACGCTTTTCCACAG CATGGGGGCCAGGTCCGCATAGGTGTTCTTGCTCAGCTCCAGCAGAGCGG TCTCCCGCGTGGCAGGATAGGCCAGCTCGATGATCAACTGGTACACCTTC TCCCGCTCGGCCTGCTGCTGGGGACTCATTACCGGACTTGGTTCCGCACT CATCGCAAAGCTGGTTTTTTTTCGCGTTAGCTTGCAAAGATCTAGTAGCT TGGAAAGATCTGGCTCCGGAATTTCGACGGACGATTGAGAAACGTGGTTT CGAGTTGGCGTCTATTGTGGTTATCGATATAAGCTTCAAGCGAGAAAGGA CCGAAAGCACGTGGCCGAACAATGTGGCCAGAGCCGAGGAACGCACGAAT GCCATAAATTAATAAATAATTTCTTGTTCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9011524..9013047 | 307..1830 | 7605 | 99.9 | Plus |
chrX | 22417052 | chrX | 19528235..19528606 | 1548..1177 | 1020 | 84.9 | Minus |
chr2L | 23010047 | chr2L | 9011282..9011459 | 129..306 | 890 | 100 | Plus |
chr2L | 23010047 | chr2L | 9011091..9011223 | 1..133 | 650 | 99.2 | Plus |
chrX | 22417052 | chrX | 19528725..19528882 | 1133..976 | 340 | 81 | Minus |
chrX | 22417052 | chrX | 19529092..19529210 | 885..767 | 280 | 82.4 | Minus |
chrX | 22417052 | chrX | 19528938..19529025 | 977..890 | 215 | 83 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9012626..9014151 | 307..1832 | 7630 | 100 | Plus |
X | 23542271 | X | 19639444..19639815 | 1548..1177 | 1020 | 84.9 | Minus |
2L | 23513712 | 2L | 9012384..9012561 | 129..306 | 890 | 100 | Plus |
2L | 23513712 | 2L | 9012193..9012325 | 1..133 | 650 | 99.2 | Plus |
X | 23542271 | X | 19639934..19640091 | 1133..976 | 340 | 81 | Minus |
X | 23542271 | X | 19640301..19640419 | 885..767 | 280 | 82.4 | Minus |
X | 23542271 | X | 19640147..19640234 | 977..890 | 215 | 83 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9012626..9014151 | 307..1832 | 7630 | 100 | Plus |
2L | 23513712 | 2L | 9012384..9012561 | 129..306 | 890 | 100 | Plus |
X | 23527363 | X | 19647623..19647913 | 1467..1177 | 870 | 86.5 | Minus |
2L | 23513712 | 2L | 9012193..9012325 | 1..133 | 650 | 99.2 | Plus |
X | 23527363 | X | 19648032..19648189 | 1133..976 | 340 | 81 | Minus |
X | 23527363 | X | 19648399..19648517 | 885..767 | 280 | 82.3 | Minus |
X | 23527363 | X | 19648245..19648332 | 977..890 | 215 | 82.9 | Minus |
X | 23527363 | X | 19647542..19647614 | 1548..1476 | 215 | 86.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 681..784 | 658..555 | 122 | 63.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9011091..9011219 | 1..129 | 100 | -> | Plus |
chr2L | 9011283..9011459 | 130..306 | 100 | -> | Plus |
chr2L | 9011524..9013047 | 307..1830 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RA | 1..453 | 72..524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RA | 1..453 | 72..524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RA | 1..453 | 72..524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RA | 1..453 | 72..524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RA | 1..453 | 72..524 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RA | 1..1830 | 1..1830 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9573-RA | 1..1186 | 566..1751 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RB | 6..1835 | 1..1830 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RA | 1..1830 | 1..1830 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13102-RB | 6..1835 | 1..1830 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9012193..9012321 | 1..129 | 100 | -> | Plus |
2L | 9012385..9012561 | 130..306 | 100 | -> | Plus |
2L | 9012626..9014149 | 307..1830 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9012193..9012321 | 1..129 | 100 | -> | Plus |
2L | 9012385..9012561 | 130..306 | 100 | -> | Plus |
2L | 9012626..9014149 | 307..1830 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9012193..9012321 | 1..129 | 100 | -> | Plus |
2L | 9012385..9012561 | 130..306 | 100 | -> | Plus |
2L | 9012626..9014149 | 307..1830 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9012193..9012321 | 1..129 | 100 | -> | Plus |
arm_2L | 9012385..9012561 | 130..306 | 100 | -> | Plus |
arm_2L | 9012626..9014149 | 307..1830 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9012626..9014149 | 307..1830 | 100 | Plus | |
2L | 9012193..9012321 | 1..129 | 100 | -> | Plus |
2L | 9012385..9012561 | 130..306 | 100 | -> | Plus |
Translation from 71 to 523
> RE57454.hyp MYMKALIVSILVAFVCVQIADSLKCYTCVTPKDCKSPKKVTCTNAAANET SYYLGVYHQNVGNLTSTRFDCLALKYNWNNDVIHQLHGCVHPNVGACSLA LKPAYAHYNKTWCLTCSGDKCNKNPAGKMSSSTIAIASSVLGLLLVKMYA *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13102-PB | 150 | CG13102-PB | 1..150 | 1..150 | 813 | 100 | Plus |
CG13102-PA | 150 | CG13102-PA | 1..150 | 1..150 | 813 | 100 | Plus |
CG9568-PA | 150 | CG9568-PA | 1..148 | 1..148 | 244 | 37.7 | Plus |
Translation from 71 to 523
> RE57454.pep MYMKALIVSILVAFVCVQIADSLKCYTCVTPKDCKSPKKVTCTNAAANET SYYLGVYHQNVGNLTSTRFDCLALKYNWNNDVIHQLHGCVHPNVGACSLA LKPAYAHYNKTWCLTCSGDKCNKNPAGKMSSSTIAIASSVLGLLLVKMYA *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22701-PA | 129 | GF22701-PA | 1..128 | 1..128 | 547 | 79.7 | Plus |
Dana\GF22697-PA | 150 | GF22697-PA | 1..138 | 1..139 | 222 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25328-PA | 150 | GG25328-PA | 1..150 | 1..150 | 691 | 86.7 | Plus |
Dere\GG25327-PA | 150 | GG25327-PA | 1..148 | 1..148 | 218 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13260-PA | 152 | GH13260-PA | 1..152 | 1..150 | 421 | 54.6 | Plus |
Dgri\GH13259-PA | 150 | GH13259-PA | 1..144 | 1..148 | 247 | 37.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13102-PB | 150 | CG13102-PB | 1..150 | 1..150 | 813 | 100 | Plus |
CG13102-PA | 150 | CG13102-PA | 1..150 | 1..150 | 813 | 100 | Plus |
CG9568-PA | 150 | CG9568-PA | 1..148 | 1..148 | 244 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17459-PA | 152 | GI17459-PA | 1..152 | 1..150 | 423 | 57.2 | Plus |
Dmoj\GI17458-PA | 146 | GI17458-PA | 17..146 | 23..150 | 310 | 47.7 | Plus |
Dmoj\GI17456-PA | 152 | GI17456-PA | 1..151 | 1..149 | 251 | 36.4 | Plus |
Dmoj\GI17457-PA | 153 | GI17457-PA | 1..152 | 1..149 | 224 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26240-PA | 150 | GL26240-PA | 1..150 | 1..150 | 580 | 70 | Plus |
Dper\GL26239-PA | 153 | GL26239-PA | 1..153 | 1..150 | 240 | 37.2 | Plus |
Dper\GL11397-PA | 165 | GL11397-PA | 1..163 | 1..148 | 227 | 36.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12047-PA | 150 | GA12047-PA | 1..150 | 1..150 | 580 | 70 | Plus |
Dpse\GA28092-PA | 153 | GA28092-PA | 1..153 | 1..150 | 239 | 37.2 | Plus |
Dpse\GA24709-PA | 162 | GA24709-PA | 1..160 | 4..148 | 220 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17370-PA | 150 | GM17370-PA | 1..150 | 1..150 | 723 | 91.3 | Plus |
Dsec\GM17359-PA | 150 | GM17359-PA | 1..148 | 1..148 | 223 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23583-PA | 150 | GD23583-PA | 1..150 | 1..150 | 716 | 90.7 | Plus |
Dsim\GD23582-PA | 150 | GD23582-PA | 1..148 | 1..148 | 221 | 37.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14106-PA | 153 | GJ14106-PA | 1..153 | 1..150 | 536 | 64.7 | Plus |
Dvir\GJ14382-PA | 153 | GJ14382-PA | 1..151 | 1..148 | 272 | 38.3 | Plus |