Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE57459.complete Sequence
907 bp (907 high quality bases) assembled on 2004-01-09
GenBank Submission: BT011370
> RE57459.complete
TGGTACACACTGCCGCACACTTAACGAACTGAAGATTATACAAACAAGTG
CTAAAATAAATGAAATCCTAAGGCAAAGTTAACGTTAATTGGATCAAATA
AAGATCTAACGATGATGCGCAGCCTTTGTGCCCTCCGTGGACAATGCCAG
CAACTGTTCAGGAGCTCCATCCGCCCTCAAAACTCAGTCCATAAGTCACA
ACAATTTTGGCGCATGAAATCGACGGATTCTCCGGAGGATGCCGCCCGTA
AATTGCGTGCGAAATCCACACTCTACTACATAACCGCCGGCGGTGTGCTG
ATTGTGGGCCTGAGCTATGCTGCTGTGCCGCTGTACAGCATCTTCTGCCA
GGCCTACAGTTACGGAGGGACCACCACGCAGGGGCACGATGCCGAAAAGG
TGGAGCACATGAAAAAGATCGAGGATCGGGTGCTGAAGATCCGTTTCAAC
GCCGACATTGGATCCTCGATGCGCTGGAACTTCAAGCCGCAGCAGTACGA
GATCAAAGTAGCTCCTGGCGAGACTGCTCTGGCCTTTTACACGGCGCGAA
ATCCCACGGATAAGCCGGTAATTGGCATCAGCACGTACAATGTGATTCCC
TTCGAGGCGGGCGCGTATTTCAACAAAATCCAATGCTTTTGCTTCGAGGA
ACAGCAACTGAATCCACACGAGGAGGTGGACATGCCCGTCTTCTTCTACA
TCGATCCCGAAATAACGGCAGATCCGGCGCTGGAGACCTGTGACACCATC
ACCCTTTCGTACACCTTCTTCGAGGCCAAGGAGGGTCTGAAACTGAACTT
CCCCAGCTATGCAAAACCTCATGCGGCAAGTGCGTGAAGGGAAAGTGCTT
AGGTCTTTGTTTTAAAACAATAAATATTTGTTATGCCAAGTAAAAAAAAA
AAAAAAA
RE57459.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31648-RA | 893 | CG31648-RA | 5..893 | 3..891 | 4445 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 5526064..5526952 | 3..891 | 4445 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5526966..5527860 | 3..897 | 4460 | 99.9 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5526966..5527860 | 3..897 | 4460 | 99.8 | Plus |
Blast to na_te.dros performed 2019-03-16 12:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
diver | 6112 | diver Tinker 6112bp | 4954..4993 | 468..506 | 116 | 80 | Plus |
RE57459.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:40:49 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 5526061..5526952 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:41 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31648-RA | 1..726 | 112..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:43:33 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31648-RA | 1..726 | 112..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:41:51 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31648-RA | 1..726 | 112..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:32:23 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31648-RA | 1..726 | 112..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:46 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31648-RA | 1..726 | 112..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:53:49 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31648-RA | 1..838 | 1..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:43:33 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31648-RA | 2..893 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:41:51 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31648-RA | 7..898 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:32:23 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31648-RA | 1..838 | 1..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:46 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31648-RA | 7..898 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:49 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5526963..5527854 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:49 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5526963..5527854 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:49 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5526963..5527854 | 1..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:41:51 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5526963..5527854 | 1..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:05:00 Download gff for
RE57459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5526963..5527854 | 1..891 | 99 | | Plus |
RE57459.pep Sequence
Translation from 111 to 836
> RE57459.pep
MMRSLCALRGQCQQLFRSSIRPQNSVHKSQQFWRMKSTDSPEDAARKLRA
KSTLYYITAGGVLIVGLSYAAVPLYSIFCQAYSYGGTTTQGHDAEKVEHM
KKIEDRVLKIRFNADIGSSMRWNFKPQQYEIKVAPGETALAFYTARNPTD
KPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEVDMPVFFYIDPE
ITADPALETCDTITLSYTFFEAKEGLKLNFPSYAKPHAASA*
RE57459.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31648-PA | 241 | CG31648-PA | 1..241 | 1..241 | 1274 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA16364-PB | 245 | GA16364-PB | 1..245 | 1..241 | 1130 | 86.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD23348-PA | 241 | GD23348-PA | 1..241 | 1..241 | 1280 | 97.5 | Plus |
RE57459.hyp Sequence
Translation from 111 to 836
> RE57459.hyp
MMRSLCALRGQCQQLFRSSIRPQNSVHKSQQFWRMKSTDSPEDAARKLRA
KSTLYYITAGGVLIVGLSYAAVPLYSIFCQAYSYGGTTTQGHDAEKVEHM
KKIEDRVLKIRFNADIGSSMRWNFKPQQYEIKVAPGETALAFYTARNPTD
KPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEVDMPVFFYIDPE
ITADPALETCDTITLSYTFFEAKEGLKLNFPSYAKPHAASA*
RE57459.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31648-PA | 241 | CG31648-PA | 1..241 | 1..241 | 1274 | 100 | Plus |