Clone RE57459 Report

Search the DGRC for RE57459

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:574
Well:59
Vector:pFlc-1
Associated Gene/TranscriptCG31648-RA
Protein status:RE57459.pep: gold
Sequenced Size:907

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31648 2003-01-01 Sim4 clustering to Release 3
CG31648 2004-01-09 Blastp of sequenced clone
CG31648 2008-04-29 Release 5.5 accounting
CG31648 2008-08-15 Release 5.9 accounting
CG31648 2008-12-18 5.12 accounting

Clone Sequence Records

RE57459.complete Sequence

907 bp (907 high quality bases) assembled on 2004-01-09

GenBank Submission: BT011370

> RE57459.complete
TGGTACACACTGCCGCACACTTAACGAACTGAAGATTATACAAACAAGTG
CTAAAATAAATGAAATCCTAAGGCAAAGTTAACGTTAATTGGATCAAATA
AAGATCTAACGATGATGCGCAGCCTTTGTGCCCTCCGTGGACAATGCCAG
CAACTGTTCAGGAGCTCCATCCGCCCTCAAAACTCAGTCCATAAGTCACA
ACAATTTTGGCGCATGAAATCGACGGATTCTCCGGAGGATGCCGCCCGTA
AATTGCGTGCGAAATCCACACTCTACTACATAACCGCCGGCGGTGTGCTG
ATTGTGGGCCTGAGCTATGCTGCTGTGCCGCTGTACAGCATCTTCTGCCA
GGCCTACAGTTACGGAGGGACCACCACGCAGGGGCACGATGCCGAAAAGG
TGGAGCACATGAAAAAGATCGAGGATCGGGTGCTGAAGATCCGTTTCAAC
GCCGACATTGGATCCTCGATGCGCTGGAACTTCAAGCCGCAGCAGTACGA
GATCAAAGTAGCTCCTGGCGAGACTGCTCTGGCCTTTTACACGGCGCGAA
ATCCCACGGATAAGCCGGTAATTGGCATCAGCACGTACAATGTGATTCCC
TTCGAGGCGGGCGCGTATTTCAACAAAATCCAATGCTTTTGCTTCGAGGA
ACAGCAACTGAATCCACACGAGGAGGTGGACATGCCCGTCTTCTTCTACA
TCGATCCCGAAATAACGGCAGATCCGGCGCTGGAGACCTGTGACACCATC
ACCCTTTCGTACACCTTCTTCGAGGCCAAGGAGGGTCTGAAACTGAACTT
CCCCAGCTATGCAAAACCTCATGCGGCAAGTGCGTGAAGGGAAAGTGCTT
AGGTCTTTGTTTTAAAACAATAAATATTTGTTATGCCAAGTAAAAAAAAA
AAAAAAA

RE57459.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31648-RA 893 CG31648-RA 5..893 3..891 4445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5526064..5526952 3..891 4445 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5526966..5527860 3..897 4460 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5526966..5527860 3..897 4460 99.8 Plus
Blast to na_te.dros performed 2019-03-16 12:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
diver 6112 diver Tinker 6112bp 4954..4993 468..506 116 80 Plus

RE57459.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:40:49 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5526061..5526952 1..891 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:41 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 1..726 112..837 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:43:33 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 1..726 112..837 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:41:51 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 1..726 112..837 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:32:23 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 1..726 112..837 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:46 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 1..726 112..837 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:53:49 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 1..838 1..837 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:43:33 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 2..893 1..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:41:51 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 7..898 1..891 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:32:23 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 1..838 1..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:46 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 7..898 1..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:49 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5526963..5527854 1..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:49 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5526963..5527854 1..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:49 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5526963..5527854 1..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:41:51 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5526963..5527854 1..891 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:05:00 Download gff for RE57459.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5526963..5527854 1..891 99   Plus

RE57459.pep Sequence

Translation from 111 to 836

> RE57459.pep
MMRSLCALRGQCQQLFRSSIRPQNSVHKSQQFWRMKSTDSPEDAARKLRA
KSTLYYITAGGVLIVGLSYAAVPLYSIFCQAYSYGGTTTQGHDAEKVEHM
KKIEDRVLKIRFNADIGSSMRWNFKPQQYEIKVAPGETALAFYTARNPTD
KPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEVDMPVFFYIDPE
ITADPALETCDTITLSYTFFEAKEGLKLNFPSYAKPHAASA*

RE57459.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31648-PA 241 CG31648-PA 1..241 1..241 1274 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16364-PB 245 GA16364-PB 1..245 1..241 1130 86.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23348-PA 241 GD23348-PA 1..241 1..241 1280 97.5 Plus

RE57459.hyp Sequence

Translation from 111 to 836

> RE57459.hyp
MMRSLCALRGQCQQLFRSSIRPQNSVHKSQQFWRMKSTDSPEDAARKLRA
KSTLYYITAGGVLIVGLSYAAVPLYSIFCQAYSYGGTTTQGHDAEKVEHM
KKIEDRVLKIRFNADIGSSMRWNFKPQQYEIKVAPGETALAFYTARNPTD
KPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEVDMPVFFYIDPE
ITADPALETCDTITLSYTFFEAKEGLKLNFPSYAKPHAASA*

RE57459.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31648-PA 241 CG31648-PA 1..241 1..241 1274 100 Plus