BDGP Sequence Production Resources |
Search the DGRC for RE57542
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 575 |
Well: | 42 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Spf45-RC |
Protein status: | RE57542.pep: gold |
Preliminary Size: | 1205 |
Sequenced Size: | 1473 |
Gene | Date | Evidence |
---|---|---|
CG17540 | 2001-12-14 | Blastp of sequenced clone |
CG17540 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17540 | 2003-01-01 | Sim4 clustering to Release 3 |
Spf45 | 2008-04-29 | Release 5.5 accounting |
Spf45 | 2008-08-15 | Release 5.9 accounting |
Spf45 | 2008-12-18 | 5.12 accounting |
1473 bp (1473 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071532
> RE57542.complete GTGTGAATCGGACATTAAGTCGAACAGTTGATAGTCATTAAATCTATCGG GCCTTGAAAATAAATAAAAACATTGTTGAAGCTCGTTGTCATCAATATCT TAAGGTGGTGCTAGTATTGATATATTTGTTAATGGATTTGTATGACGGCA TTGATACGAGGGTCGATCTAGCCAGATTGATGGATGGTCTTCGGGAATAA AAATGTTACAGACCCAGCTGGCAGTAAAAATGGCTGTCAAAAAACCACTT ATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTTGCAGATCCAGAAGT TACATGTTTTGCTCCAATTACTACAGTTGTATCCAAACCATTAATAAGTG GTAAAGCCCTTCCATCCATACTGGAAAGGATAAACAGGGGGGACTGGGAC GTTGCCGATGAATACGATCCTCAAAGGCCAAATGAATATGAAAAACTTAA AGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAG AAGACCGAGATGACAAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGT CGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGG GTTTGGCCACCGGCAAAACGATGATGACATGTACTTGCCATCTCCGGGCC TTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAA GAAATGTCCATTGATAGTGGTTGTGAAGCCACTAATACTATGCCATATTC TGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATATGGGTTTAAGGATG GTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTA GAGAAAACCTCCAAACGTGGTGGACGGATCATACACGAAAAAGACGTTTT TCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAA CAAGTCCCAGCCACAAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCG GCTGAGAGTGGTGACATCGGATACAGCATTACGGAGATTATGAAATCACC AAGCAAGGTTGTTCTTCTACGCAACATGGTAGGACCCGGGGACGTTGACG AAGAATTGGAACCCGAGGTAAAAGACGAATGCAACACCAAGTACGGGGAA GTGAACAGTGTAATCATTCACGAATCGTTCGGAACTGTGCCAGAAGATGC AGTTAAAATATTCGTAGAGTTTAGGCGGATCGAAAGTGCAATTAAAGCTG TAGTGGACCTTAATGGACGTTTTTTTGGAGGACGTCAAGTGCGAGCGGGG TTTTACAACTATGATAAGTTTAAATGTTTCCAATTACATTAGAACTAATA CAACTAAGATTGCATTTATTTTTTTCTAAGTTATTGATAGCCTAAAAAAT GTTTACCGCACAGAACTAGTCTTGTAAATTTCTATTAAAAACTACTTTCT ATCAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spf45-RA | 1574 | Spf45-RA | 20..1482 | 1..1462 | 7275 | 99.9 | Plus |
Spf45.a | 1457 | Spf45.a | 1..1457 | 1..1462 | 7160 | 99.5 | Plus |
Spf45-RB | 1531 | Spf45-RB | 268..1439 | 291..1462 | 5860 | 100 | Plus |
Spf45-RB | 1531 | Spf45-RB | 20..267 | 1..247 | 1200 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 22958380..22959379 | 1247..248 | 4970 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 22959435..22959682 | 247..1 | 1190 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 22958109..22958320 | 1457..1246 | 1060 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 23067145..23068144 | 1247..248 | 5000 | 100 | Minus |
2L | 23513712 | 2L | 23068200..23068447 | 247..1 | 1190 | 99.6 | Minus |
2L | 23513712 | 2L | 23066869..23067085 | 1462..1246 | 1085 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 23067145..23068144 | 1247..248 | 5000 | 100 | Minus |
2L | 23513712 | 2L | 23068200..23068447 | 247..1 | 1200 | 99.5 | Minus |
2L | 23513712 | 2L | 23066869..23067085 | 1462..1246 | 1085 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 22958109..22958318 | 1248..1457 | 100 | <- | Minus |
chr2L | 22958380..22959379 | 248..1247 | 99 | <- | Minus |
chr2L | 22959435..22959682 | 1..247 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RA | 1..1212 | 132..1342 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RA | 1..1212 | 132..1342 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RA | 1..1212 | 132..1342 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RA | 1..1212 | 132..1342 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RA | 1..1212 | 132..1342 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RA | 1..1458 | 1..1457 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RA | 1..1458 | 1..1457 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RA | 1..1397 | 62..1457 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RA | 1..1458 | 1..1457 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spf45-RA | 1..1397 | 62..1457 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23068200..23068447 | 1..247 | 99 | Minus | |
2L | 23066874..23067083 | 1248..1457 | 100 | <- | Minus |
2L | 23067145..23068144 | 248..1247 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23068200..23068447 | 1..247 | 99 | Minus | |
2L | 23066874..23067083 | 1248..1457 | 100 | <- | Minus |
2L | 23067145..23068144 | 248..1247 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23068200..23068447 | 1..247 | 99 | Minus | |
2L | 23066874..23067083 | 1248..1457 | 100 | <- | Minus |
2L | 23067145..23068144 | 248..1247 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 22960932..22961179 | 1..247 | 99 | Minus | |
arm_2L | 22959606..22959815 | 1248..1457 | 100 | <- | Minus |
arm_2L | 22959877..22960876 | 248..1247 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 23066874..23067083 | 1248..1457 | 100 | <- | Minus |
2L | 23067145..23068144 | 248..1247 | 100 | <- | Minus |
2L | 23068200..23068447 | 1..247 | 99 | Minus |
Translation from 131 to 1341
> RE57542.hyp MDLYDGIDTRARSSQIDGWSSGIKMLQTQLAVKMAVKKPLMTPVVNLRSK RLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRP NEYEKLKEKSNGSDKNRAGVSDREDRDDKEKDRKRGRVGRREFYRDEVSA PNLKLSGFGHRQNDDDMYLPSPGLVAKQGGATIAPPPSLQEMSIDSGCEA TNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQGMAIALQVEKTSKRGGRI IHEKDVFLPPLALSPPSIGSQIGTSPSHKAMPPPQMVDTAAESGDIGYSI TEIMKSPSKVVLLRNMVGPGDVDEELEPEVKDECNTKYGEVNSVIIHESF GTVPEDAVKIFVEFRRIESAIKAVVDLNGRFFGGRQVRAGFYNYDKFKCF QLH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spf45-PA | 403 | CG17540-PA | 1..403 | 1..403 | 2086 | 100 | Plus |
Spf45-PC | 363 | CG17540-PC | 1..363 | 41..403 | 1885 | 100 | Plus |
Spf45-PB | 371 | CG17540-PB | 6..371 | 38..403 | 1819 | 95.9 | Plus |
pUf68-PJ | 545 | CG12085-PJ | 444..538 | 308..397 | 192 | 47.9 | Plus |
pUf68-PI | 545 | CG12085-PI | 444..538 | 308..397 | 192 | 47.9 | Plus |
Translation from 202 to 1341
> RE57542.pep MLQTQLAVKMAVKKPLMTPVVNLRSKRLADPEVTCFAPITTVVSKPLISG KALPSILERINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDRE DRDDKEKDRKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGL VAKQGGATIAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDG QGLGKSEQGMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGT SPSHKAMPPPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDE ELEPEVKDECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAV VDLNGRFFGGRQVRAGFYNYDKFKCFQLH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15900-PA | 401 | GF15900-PA | 25..401 | 1..379 | 1171 | 68.4 | Plus |
Dana\GF25032-PA | 643 | GF25032-PA | 542..636 | 284..373 | 199 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21408-PA | 406 | GG21408-PA | 25..406 | 1..379 | 1751 | 88 | Plus |
Dere\GG11065-PA | 200 | GG11065-PA | 1..200 | 180..379 | 961 | 92.5 | Plus |
Dere\GG14596-PA | 731 | GG14596-PA | 630..724 | 284..373 | 205 | 47.9 | Plus |
Dere\GG20057-PA | 440 | GG20057-PA | 338..434 | 282..373 | 152 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13625-PA | 451 | GH13625-PA | 25..451 | 1..379 | 1145 | 62 | Plus |
Dgri\GH15204-PA | 643 | GH15204-PA | 542..636 | 284..373 | 200 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spf45-PA | 403 | CG17540-PA | 25..403 | 1..379 | 1960 | 100 | Plus |
Spf45-PC | 363 | CG17540-PC | 1..363 | 17..379 | 1885 | 100 | Plus |
Spf45-PB | 371 | CG17540-PB | 6..371 | 14..379 | 1819 | 95.9 | Plus |
hfp-PJ | 545 | CG12085-PJ | 444..538 | 284..373 | 192 | 47.9 | Plus |
hfp-PI | 545 | CG12085-PI | 444..538 | 284..373 | 192 | 47.9 | Plus |
hfp-PH | 545 | CG12085-PH | 444..538 | 284..373 | 192 | 47.9 | Plus |
hfp-PG | 545 | CG12085-PG | 444..538 | 284..373 | 192 | 47.9 | Plus |
hfp-PF | 545 | CG12085-PF | 444..538 | 284..373 | 192 | 47.9 | Plus |
hfp-PE | 545 | CG12085-PE | 444..538 | 284..373 | 192 | 47.9 | Plus |
hfp-PB | 545 | CG12085-PB | 444..538 | 284..373 | 192 | 47.9 | Plus |
hfp-PD | 545 | CG12085-PD | 444..538 | 284..373 | 192 | 47.9 | Plus |
hfp-PC | 545 | CG12085-PC | 444..538 | 284..373 | 192 | 47.9 | Plus |
hfp-PA | 637 | CG12085-PA | 536..630 | 284..373 | 192 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11727-PA | 438 | GI11727-PA | 25..438 | 1..379 | 1138 | 61.6 | Plus |
Dmoj\GI16722-PA | 616 | GI16722-PA | 515..609 | 284..373 | 203 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21138-PA | 418 | GL21138-PA | 24..418 | 1..379 | 1185 | 66.4 | Plus |
Dper\GL22585-PA | 653 | GL22585-PA | 552..646 | 284..373 | 200 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA29081-PA | 418 | GA29081-PA | 24..418 | 1..379 | 1185 | 66.4 | Plus |
Dpse\GA11385-PA | 653 | GA11385-PA | 552..646 | 284..373 | 200 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11754-PA | 400 | GM11754-PA | 25..400 | 1..379 | 1832 | 92.1 | Plus |
Dsec\GM11755-PA | 450 | GM11755-PA | 1..169 | 180..357 | 714 | 80.3 | Plus |
Dsec\GM14211-PA | 616 | GM14211-PA | 515..609 | 284..373 | 203 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17712-PA | 403 | GD17712-PA | 25..403 | 1..379 | 1880 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13092-PA | 432 | GJ13092-PA | 25..432 | 1..379 | 1146 | 63.8 | Plus |
Dvir\GJ12466-PA | 645 | GJ12466-PA | 544..638 | 284..373 | 203 | 47.9 | Plus |
Dvir\GJ20975-PA | 428 | GJ20975-PA | 317..428 | 273..379 | 154 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23713-PA | 443 | GK23713-PA | 25..443 | 1..379 | 1201 | 63.5 | Plus |
Dwil\GK17204-PA | 631 | GK17204-PA | 530..624 | 284..373 | 206 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10978-PA | 367 | GE10978-PA | 1..367 | 10..379 | 1658 | 85.4 | Plus |
Dyak\GE20955-PA | 637 | GE20955-PA | 536..630 | 284..373 | 205 | 47.9 | Plus |
Dyak\GE11595-PA | 437 | GE11595-PA | 335..431 | 282..373 | 156 | 39.8 | Plus |