Clone RE57542 Report

Search the DGRC for RE57542

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:575
Well:42
Vector:pFlc-1
Associated Gene/TranscriptSpf45-RC
Protein status:RE57542.pep: gold
Preliminary Size:1205
Sequenced Size:1473

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17540 2001-12-14 Blastp of sequenced clone
CG17540 2002-01-01 Sim4 clustering to Release 2
CG17540 2003-01-01 Sim4 clustering to Release 3
Spf45 2008-04-29 Release 5.5 accounting
Spf45 2008-08-15 Release 5.9 accounting
Spf45 2008-12-18 5.12 accounting

Clone Sequence Records

RE57542.complete Sequence

1473 bp (1473 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071532

> RE57542.complete
GTGTGAATCGGACATTAAGTCGAACAGTTGATAGTCATTAAATCTATCGG
GCCTTGAAAATAAATAAAAACATTGTTGAAGCTCGTTGTCATCAATATCT
TAAGGTGGTGCTAGTATTGATATATTTGTTAATGGATTTGTATGACGGCA
TTGATACGAGGGTCGATCTAGCCAGATTGATGGATGGTCTTCGGGAATAA
AAATGTTACAGACCCAGCTGGCAGTAAAAATGGCTGTCAAAAAACCACTT
ATGACGCCAGTGGTTAATCTAAGGTCCAAACGCCTTGCAGATCCAGAAGT
TACATGTTTTGCTCCAATTACTACAGTTGTATCCAAACCATTAATAAGTG
GTAAAGCCCTTCCATCCATACTGGAAAGGATAAACAGGGGGGACTGGGAC
GTTGCCGATGAATACGATCCTCAAAGGCCAAATGAATATGAAAAACTTAA
AGAGAAAAGTAATGGCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAG
AAGACCGAGATGACAAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGT
CGAGAATTTTATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGG
GTTTGGCCACCGGCAAAACGATGATGACATGTACTTGCCATCTCCGGGCC
TTGTAGCTAAACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAA
GAAATGTCCATTGATAGTGGTTGTGAAGCCACTAATACTATGCCATATTC
TGCCAGCTCGGTGGCCGCCAAAATTATGGCAAAATATGGGTTTAAGGATG
GTCAAGGTCTCGGAAAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTA
GAGAAAACCTCCAAACGTGGTGGACGGATCATACACGAAAAAGACGTTTT
TCTGCCACCCCTAGCATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAA
CAAGTCCCAGCCACAAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCG
GCTGAGAGTGGTGACATCGGATACAGCATTACGGAGATTATGAAATCACC
AAGCAAGGTTGTTCTTCTACGCAACATGGTAGGACCCGGGGACGTTGACG
AAGAATTGGAACCCGAGGTAAAAGACGAATGCAACACCAAGTACGGGGAA
GTGAACAGTGTAATCATTCACGAATCGTTCGGAACTGTGCCAGAAGATGC
AGTTAAAATATTCGTAGAGTTTAGGCGGATCGAAAGTGCAATTAAAGCTG
TAGTGGACCTTAATGGACGTTTTTTTGGAGGACGTCAAGTGCGAGCGGGG
TTTTACAACTATGATAAGTTTAAATGTTTCCAATTACATTAGAACTAATA
CAACTAAGATTGCATTTATTTTTTTCTAAGTTATTGATAGCCTAAAAAAT
GTTTACCGCACAGAACTAGTCTTGTAAATTTCTATTAAAAACTACTTTCT
ATCAAACAAAAAAAAAAAAAAAA

RE57542.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RA 1574 Spf45-RA 20..1482 1..1462 7275 99.9 Plus
Spf45.a 1457 Spf45.a 1..1457 1..1462 7160 99.5 Plus
Spf45-RB 1531 Spf45-RB 268..1439 291..1462 5860 100 Plus
Spf45-RB 1531 Spf45-RB 20..267 1..247 1200 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22958380..22959379 1247..248 4970 99.8 Minus
chr2L 23010047 chr2L 22959435..22959682 247..1 1190 99.6 Minus
chr2L 23010047 chr2L 22958109..22958320 1457..1246 1060 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23068144 1247..248 5000 100 Minus
2L 23513712 2L 23068200..23068447 247..1 1190 99.6 Minus
2L 23513712 2L 23066869..23067085 1462..1246 1085 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23068144 1247..248 5000 100 Minus
2L 23513712 2L 23068200..23068447 247..1 1200 99.5 Minus
2L 23513712 2L 23066869..23067085 1462..1246 1085 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:47:57 has no hits.

RE57542.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:48:41 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22958109..22958318 1248..1457 100 <- Minus
chr2L 22958380..22959379 248..1247 99 <- Minus
chr2L 22959435..22959682 1..247 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:44 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 1..1212 132..1342 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:02 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 1..1212 132..1342 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:32:54 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 1..1212 132..1342 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:28 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 1..1212 132..1342 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:26 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 1..1212 132..1342 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:33 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 1..1458 1..1457 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:02 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 1..1458 1..1457 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:32:54 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 1..1397 62..1457 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:28 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 1..1458 1..1457 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:26 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 1..1397 62..1457 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:41 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23068200..23068447 1..247 99   Minus
2L 23066874..23067083 1248..1457 100 <- Minus
2L 23067145..23068144 248..1247 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:41 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23068200..23068447 1..247 99   Minus
2L 23066874..23067083 1248..1457 100 <- Minus
2L 23067145..23068144 248..1247 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:41 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23068200..23068447 1..247 99   Minus
2L 23066874..23067083 1248..1457 100 <- Minus
2L 23067145..23068144 248..1247 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:32:54 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22960932..22961179 1..247 99   Minus
arm_2L 22959606..22959815 1248..1457 100 <- Minus
arm_2L 22959877..22960876 248..1247 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:04 Download gff for RE57542.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23066874..23067083 1248..1457 100 <- Minus
2L 23067145..23068144 248..1247 100 <- Minus
2L 23068200..23068447 1..247 99   Minus

RE57542.hyp Sequence

Translation from 131 to 1341

> RE57542.hyp
MDLYDGIDTRARSSQIDGWSSGIKMLQTQLAVKMAVKKPLMTPVVNLRSK
RLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRP
NEYEKLKEKSNGSDKNRAGVSDREDRDDKEKDRKRGRVGRREFYRDEVSA
PNLKLSGFGHRQNDDDMYLPSPGLVAKQGGATIAPPPSLQEMSIDSGCEA
TNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQGMAIALQVEKTSKRGGRI
IHEKDVFLPPLALSPPSIGSQIGTSPSHKAMPPPQMVDTAAESGDIGYSI
TEIMKSPSKVVLLRNMVGPGDVDEELEPEVKDECNTKYGEVNSVIIHESF
GTVPEDAVKIFVEFRRIESAIKAVVDLNGRFFGGRQVRAGFYNYDKFKCF
QLH*

RE57542.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-PA 403 CG17540-PA 1..403 1..403 2086 100 Plus
Spf45-PC 363 CG17540-PC 1..363 41..403 1885 100 Plus
Spf45-PB 371 CG17540-PB 6..371 38..403 1819 95.9 Plus
pUf68-PJ 545 CG12085-PJ 444..538 308..397 192 47.9 Plus
pUf68-PI 545 CG12085-PI 444..538 308..397 192 47.9 Plus

RE57542.pep Sequence

Translation from 202 to 1341

> RE57542.pep
MLQTQLAVKMAVKKPLMTPVVNLRSKRLADPEVTCFAPITTVVSKPLISG
KALPSILERINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDRE
DRDDKEKDRKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGL
VAKQGGATIAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDG
QGLGKSEQGMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGT
SPSHKAMPPPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDE
ELEPEVKDECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAV
VDLNGRFFGGRQVRAGFYNYDKFKCFQLH*

RE57542.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15900-PA 401 GF15900-PA 25..401 1..379 1171 68.4 Plus
Dana\GF25032-PA 643 GF25032-PA 542..636 284..373 199 47.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21408-PA 406 GG21408-PA 25..406 1..379 1751 88 Plus
Dere\GG11065-PA 200 GG11065-PA 1..200 180..379 961 92.5 Plus
Dere\GG14596-PA 731 GG14596-PA 630..724 284..373 205 47.9 Plus
Dere\GG20057-PA 440 GG20057-PA 338..434 282..373 152 37.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13625-PA 451 GH13625-PA 25..451 1..379 1145 62 Plus
Dgri\GH15204-PA 643 GH15204-PA 542..636 284..373 200 47.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-PA 403 CG17540-PA 25..403 1..379 1960 100 Plus
Spf45-PC 363 CG17540-PC 1..363 17..379 1885 100 Plus
Spf45-PB 371 CG17540-PB 6..371 14..379 1819 95.9 Plus
hfp-PJ 545 CG12085-PJ 444..538 284..373 192 47.9 Plus
hfp-PI 545 CG12085-PI 444..538 284..373 192 47.9 Plus
hfp-PH 545 CG12085-PH 444..538 284..373 192 47.9 Plus
hfp-PG 545 CG12085-PG 444..538 284..373 192 47.9 Plus
hfp-PF 545 CG12085-PF 444..538 284..373 192 47.9 Plus
hfp-PE 545 CG12085-PE 444..538 284..373 192 47.9 Plus
hfp-PB 545 CG12085-PB 444..538 284..373 192 47.9 Plus
hfp-PD 545 CG12085-PD 444..538 284..373 192 47.9 Plus
hfp-PC 545 CG12085-PC 444..538 284..373 192 47.9 Plus
hfp-PA 637 CG12085-PA 536..630 284..373 192 47.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11727-PA 438 GI11727-PA 25..438 1..379 1138 61.6 Plus
Dmoj\GI16722-PA 616 GI16722-PA 515..609 284..373 203 47.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21138-PA 418 GL21138-PA 24..418 1..379 1185 66.4 Plus
Dper\GL22585-PA 653 GL22585-PA 552..646 284..373 200 47.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29081-PA 418 GA29081-PA 24..418 1..379 1185 66.4 Plus
Dpse\GA11385-PA 653 GA11385-PA 552..646 284..373 200 47.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11754-PA 400 GM11754-PA 25..400 1..379 1832 92.1 Plus
Dsec\GM11755-PA 450 GM11755-PA 1..169 180..357 714 80.3 Plus
Dsec\GM14211-PA 616 GM14211-PA 515..609 284..373 203 47.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17712-PA 403 GD17712-PA 25..403 1..379 1880 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13092-PA 432 GJ13092-PA 25..432 1..379 1146 63.8 Plus
Dvir\GJ12466-PA 645 GJ12466-PA 544..638 284..373 203 47.9 Plus
Dvir\GJ20975-PA 428 GJ20975-PA 317..428 273..379 154 37.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23713-PA 443 GK23713-PA 25..443 1..379 1201 63.5 Plus
Dwil\GK17204-PA 631 GK17204-PA 530..624 284..373 206 49 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10978-PA 367 GE10978-PA 1..367 10..379 1658 85.4 Plus
Dyak\GE20955-PA 637 GE20955-PA 536..630 284..373 205 47.9 Plus
Dyak\GE11595-PA 437 GE11595-PA 335..431 282..373 156 39.8 Plus