Clone RE57622 Report

Search the DGRC for RE57622

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:576
Well:22
Vector:pFlc-1
Associated Gene/TranscriptCG8028-RA
Protein status:RE57622.pep: wuzgold
Preliminary Size:1692
Sequenced Size:2031

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8028 2002-01-01 Sim4 clustering to Release 2
CG8028 2003-01-01 Sim4 clustering to Release 3
CG8028 2004-07-15 Blastp of sequenced clone
CG8028 2008-04-29 Release 5.5 accounting
CG8028 2008-08-15 Release 5.9 accounting
CG8028 2008-12-18 5.12 accounting

Clone Sequence Records

RE57622.complete Sequence

2031 bp (2031 high quality bases) assembled on 2004-07-15

GenBank Submission: BT015210

> RE57622.complete
TGGGGATTGATATACGCACACGGACGGATGCCTCAGACTGGGATCGTCTG
GTTGACGATCGAGCACCGACTCCAGTCGCGCCCAGCATACCAGATGAAGA
AGTCGAAATCCTACACACTGGAGGCACCCGATGGCGGCTGGGGAATCCTC
GTCTGCATTGGCATGGCCCTGCCTTTTGTAAGTACTAACGCAGGGAACTC
AATCGGCCAAGAAATGCAAAGTCAGTGGGTATCGAGGTGGTTCTTAAGTG
AATGGAAAATAGTTTAAATAAAATTCAGAGTAAACTTTTTTTTTCTAGAA
CTAATGATATAATGGCATAAATAAAGAACGCAATTAGCATAAATTCAAAC
GATTACTTACAGACAAGTGCCCTTGCGGCTTTGCCATCGTTTGGCCTGGT
CTTCGGCGAGTTCCTGAAGAGCATTGGAGCGGAGACGAGTGCCATGGCCA
TCATAACGAGTGCCTTCTTCTCGTCGATGAGCTTCGCCGGCCTGTTCTCC
GGCTCCCTGTTCCAGCGCTTTGGAATGCGGCAGGTGGGCGTCACTGGCGG
CATCTTGTACTTCCTGGGCACTGGAATGCAGTTGTTCGCCACCTCCACGC
TACACCTGATCATGGCCTTTAGCGTCGTTCAGGGATTCGCCTTCGGGCTG
ATGGTGCCCACCTGCTATACGACATTCAACCATTATTTTGTCAAGAACCG
CGTGATGTGGATGAGCTTTGCCCAGACACTGATTGGCTTGGGCTCCATGC
TATATCCGATTGTCATGCAGAAGTTGATGTCATGGTACGGCTTCCGCGGT
TGCCTGCTCATCCTCACGGGACTGAATGCTCATGCGGTGTTCGGGATGCT
GGTCATGCACCCAGTGGAGTGGCACATGCGTCGCGTGCCCATCCAGCCCG
AGGAGCAGGAGGAACTCAAGGAGTTGAGCCCAACGGTGGTGATTAGAGTG
CAGCCGGAAACACCGCTTAAGGCTACCAGAGAGGAGCCCAACTTTCATAC
CGCTGATCCAGGAGCGCGAAAGCTCTCCCACGCCGAGGAGCAAATGCTGA
AGGTTCTGTCCAGTCGGGCCTCGAGCATCACCAGCCTGGGCAATTGGTCC
GGACCCGTGGTGGTCAGTGACGCCTCGCCCCAGATGATGCACAGCCTGCA
GACCTCACGGCGTCCGAGCACGATTGCCGGTGCATCAGGTGCAGTAGCTC
CAGCCCACGCTACCAAAAAGAGCTGGGTGCGCACCATCGTCGACTTCCTC
GATCTCACGCTGCTGAAGAAGCCCATTTTCGTTAACATCGTGCTGGGCAT
CACCTTTGCCCTCTACTCCGACATCACCTTCTTCACCATGCAGCCAGTCT
ACCTATTTGAGCTGGGATACAGCAGGCCCGACACGGCCACCATTATCGCC
ATTGGAGCGGCCGCAGACTTGGCATCTCGTATTTTCCTGGCCATCACCGC
CGTGTGCATCCAGGTTCCTTCGAGATACATTTATTTGGCCGGAGCCGTTT
TCACCGTCTTTGCGAGATTCGGTAGGCGAACCCTTCCTTGGGCTCCAAGA
ACTCCCTTCCTCCCACTAATCTCACTCATTTTCCCACAGCCTTCAACGGA
ATCACACAGTTTGTGGGCATGGCCTGCATCACGGCGGTCATTGGATTTCT
GCGCACCTGGCTCCACGTTCCACTGCCTCTGGTCTTTGCCGACTACTTGC
CCAAGGAAAGGTTCGCCACTGGCTATGGCCTTTTCATGTTCATCCAAGGC
AATGCCATGTTCCTCATCGGTCCCATTGTTGGGTTTATTCGGGACAAGAC
CAGGGATTACATTTTCGTCTTTCACATCCTAAACGGCTTCATGATCCTGT
GCGCCGCTCCTTGGGTCCTCGAAGTGCTGATCGTCAAGTTTCGGAGGCGT
AACAAAATCGAACGCAACAACGTTGATCACGAGGATGTTGATAACCAGGG
ACGTAGTGCAATGGTCCAATAAAAAAAACTCTACCACCCCCCCCCCCCCT
TCCTTTTTTTTTAACAAAAAAAAAAAAAAAA

RE57622.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8028-RA 2087 CG8028-RA 2..2018 3..2019 10085 100 Plus
CG8028-RB 1876 CG8028-RB 151..1807 363..2019 8285 100 Plus
CG8028.a 1918 CG8028.a 210..1368 363..1521 5795 100 Plus
CG8028.a 1918 CG8028.a 1368..1798 1589..2019 2155 100 Plus
CG8028.a 1918 CG8028.a 35..209 3..177 875 100 Plus
CG8028-RB 1876 CG8028-RB 1..150 28..177 750 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19167880..19169253 1376..3 6750 99.4 Minus
chrX 22417052 chrX 19166558..19166894 1712..1376 1685 100 Minus
chrX 22417052 chrX 19166175..19166482 2015..1708 1480 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19278974..19280347 1376..3 6870 100 Minus
X 23542271 X 19277642..19277978 1712..1376 1685 100 Minus
X 23542271 X 19277256..19277567 2019..1708 1560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19287072..19288445 1376..3 6870 100 Minus
X 23527363 X 19285740..19286076 1712..1376 1685 100 Minus
X 23527363 X 19285354..19285665 2019..1708 1560 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:20:06 has no hits.

RE57622.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:20:59 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19167880..19169254 1..1376 99   Minus
chrX 19166175..19166479 1711..2015 98 <- Minus
chrX 19166560..19166893 1377..1710 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:25:47 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
CG8028-RB 146..1620 356..1832 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:34:11 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
CG8028-RB 146..1620 356..1832 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:20:11 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
CG8028-RC 146..1309 356..1521 99 == Plus
CG8028-RC 1310..1692 1590..1972 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:18:05 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
CG8028-RB 146..1620 356..1832 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:33 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
CG8028-RC 146..1309 356..1521 99 == Plus
CG8028-RC 1310..1692 1590..1972 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:40:22 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
CG8028-RA 2..2014 3..2015 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:34:11 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
CG8028-RA 2..2014 3..2015 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:20:11 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
CG8028-RD 2..1521 1..1521 99 == Plus
CG8028-RD 1522..1947 1590..2015 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:18:06 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
CG8028-RA 2..2014 3..2015 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:33 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
CG8028-RD 2..1521 1..1521 99 == Plus
CG8028-RD 1522..1947 1590..2015 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:20:59 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
X 19277260..19277564 1711..2015 100 <- Minus
X 19277644..19277977 1377..1710 100 <- Minus
X 19278974..19280348 1..1376 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:20:59 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
X 19277260..19277564 1711..2015 100 <- Minus
X 19277644..19277977 1377..1710 100 <- Minus
X 19278974..19280348 1..1376 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:20:59 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
X 19277260..19277564 1711..2015 100 <- Minus
X 19277644..19277977 1377..1710 100 <- Minus
X 19278974..19280348 1..1376 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:20:11 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19171293..19171597 1711..2015 100 <- Minus
arm_X 19171677..19172010 1377..1710 100 <- Minus
arm_X 19173007..19174381 1..1376 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:55:12 Download gff for RE57622.complete
Subject Subject Range Query Range Percent Splice Strand
X 19285742..19286075 1377..1710 100 <- Minus
X 19285358..19285662 1711..2015 100 <- Minus
X 19287072..19288446 1..1376 99   Minus

RE57622.pep Sequence

Translation from 443 to 1831

> RE57622.pep
MAIITSAFFSSMSFAGLFSGSLFQRFGMRQVGVTGGILYFLGTGMQLFAT
STLHLIMAFSVVQGFAFGLMVPTCYTTFNHYFVKNRVMWMSFAQTLIGLG
SMLYPIVMQKLMSWYGFRGCLLILTGLNAHAVFGMLVMHPVEWHMRRVPI
QPEEQEELKELSPTVVIRVQPETPLKATREEPNFHTADPGARKLSHAEEQ
MLKVLSSRASSITSLGNWSGPVVVSDASPQMMHSLQTSRRPSTIAGASGA
VAPAHATKKSWVRTIVDFLDLTLLKKPIFVNIVLGITFALYSDITFFTMQ
PVYLFELGYSRPDTATIIAIGAAADLASRIFLAITAVCIQVPSRYIYLAG
AVFTVFARFGRRTLPWAPRTPFLPLISLIFPQPSTESHSLWAWPASRRSL
DFCAPGSTFHCLWSLPTTCPRKGSPLAMAFSCSSKAMPCSSSVPLLGLFG
TRPGITFSSFTS*

RE57622.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15949-PA 376 GF15949-PA 1..371 1..361 1512 80.9 Plus
Dana\GF15995-PA 634 GF15995-PA 148..514 13..350 290 24.1 Plus
Dana\GF15947-PA 654 GF15947-PA 56..212 2..162 257 33.5 Plus
Dana\GF15997-PA 619 GF15997-PA 97..509 16..358 246 22.4 Plus
Dana\GF15996-PA 655 GF15996-PA 86..231 4..149 219 33.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18063-PA 412 GG18063-PA 1..315 1..317 1489 89.3 Plus
Dere\GG18061-PA 621 GG18061-PA 141..501 13..350 271 24.7 Plus
Dere\GG18069-PA 600 GG18069-PA 96..490 16..358 264 23.5 Plus
Dere\GG18062-PA 647 GG18062-PA 56..212 2..162 255 32.9 Plus
Dere\GG18060-PA 653 GG18060-PA 86..252 4..166 229 32.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12137-PA 562 GH12137-PA 62..438 1..360 1296 65.5 Plus
Dgri\GH12571-PA 648 GH12571-PA 147..536 13..358 285 25.1 Plus
Dgri\GH12136-PA 665 GH12136-PA 56..278 2..209 257 27.4 Plus
Dgri\GH12572-PA 646 GH12572-PA 85..345 3..263 256 27 Plus
Dgri\GH12573-PA 610 GH12573-PA 98..503 16..358 246 21.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8028-PD 486 CG8028-PD 1..359 1..359 1834 100 Plus
CG8028-PC 563 CG8028-PC 78..436 1..359 1834 100 Plus
CG14196-PA 600 CG14196-PA 96..490 16..358 279 22.7 Plus
CG8051-PB 616 CG8051-PB 136..496 13..350 278 24.9 Plus
CG8051-PA 616 CG8051-PA 136..496 13..350 278 24.9 Plus
CG8034-PA 647 CG8034-PA 56..200 2..146 256 33.8 Plus
CG8034-PB 582 CG8034-PB 1..135 12..146 244 33.3 Plus
out-PB 655 CG8062-PB 86..252 4..166 229 31.5 Plus
out-PA 655 CG8062-PA 86..252 4..166 229 31.5 Plus
CG8389-PA 471 CG8389-PA 55..262 2..205 226 29.7 Plus
CG8389-PB 471 CG8389-PB 55..262 2..205 226 29.7 Plus
Sln-PA 855 CG8271-PA 289..425 19..155 172 30.7 Plus
CG11665-PB 658 CG11665-PB 106..311 13..214 169 25.7 Plus
CG11665-PA 658 CG11665-PA 106..311 13..214 169 25.7 Plus
chk-PC 894 CG3409-PC 178..356 2..168 163 24.6 Plus
chk-PB 894 CG3409-PB 178..356 2..168 163 24.6 Plus
chk-PA 894 CG3409-PA 178..356 2..168 163 24.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10986-PA 569 GI10986-PA 65..445 1..359 1181 65.4 Plus
Dmoj\GI11137-PA 610 GI11137-PA 100..503 15..358 292 24.3 Plus
Dmoj\GI11135-PA 625 GI11135-PA 138..515 13..359 290 24.6 Plus
Dmoj\GI10984-PA 646 GI10984-PA 56..208 2..158 258 32.5 Plus
Dmoj\GI11136-PA 695 GI11136-PA 137..306 3..166 218 30 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12987-PA 517 GL12987-PA 56..390 1..359 1315 76.2 Plus
Dper\GL13009-PA 535 GL13009-PA 148..507 13..339 252 24.6 Plus
Dper\GL12986-PA 642 GL12986-PA 48..200 2..158 251 32.5 Plus
Dper\GL13010-PA 715 GL13010-PA 100..243 4..147 210 32.6 Plus
Dper\GL10118-PA 472 GL10118-PA 55..261 2..203 204 26.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20776-PA 542 GA20776-PA 56..415 1..359 1499 83.3 Plus
Dpse\GA25837-PA 633 GA25837-PA 137..521 13..358 264 23.2 Plus
Dpse\GA25845-PA 598 GA25845-PA 99..488 16..358 254 21.2 Plus
Dpse\GA20780-PA 626 GA20780-PA 31..183 2..158 248 32.5 Plus
Dpse\GA20797-PA 648 GA20797-PA 86..229 4..147 208 32.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22749-PA 603 GM22749-PA 118..476 1..359 1756 95.8 Plus
Dsec\GM22756-PA 600 GM22756-PA 96..490 16..358 267 22.2 Plus
Dsec\GM22747-PA 537 GM22747-PA 137..493 13..346 263 25.4 Plus
Dsec\GM22748-PA 639 GM22748-PA 56..212 2..162 252 32.9 Plus
Dsec\GM22746-PA 654 GM22746-PA 95..252 13..166 227 32.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24461-PA 380 GD24461-PA 56..366 1..311 1598 96.8 Plus
Dsim\GD15591-PA 600 GD15591-PA 96..490 16..358 275 21.7 Plus
Dsim\GD15585-PA 618 GD15585-PA 138..498 13..350 271 25.5 Plus
Dsim\GD15584-PA 654 GD15584-PA 86..252 4..166 231 32.3 Plus
Dsim\GD11150-PA 471 GD11150-PA 55..262 2..205 207 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19450-PA 558 GJ19450-PA 65..433 1..358 1355 70.5 Plus
Dvir\GJ18692-PA 638 GJ18692-PA 140..524 13..358 262 23.9 Plus
Dvir\GJ19449-PA 648 GJ19449-PA 56..208 2..158 255 32.5 Plus
Dvir\GJ18694-PA 605 GJ18694-PA 98..498 16..358 245 21.7 Plus
Dvir\GJ18693-PA 650 GJ18693-PA 85..311 3..199 240 28.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24906-PA 554 GK24906-PA 60..431 1..364 1296 70.9 Plus
Dwil\GK19799-PA 597 GK19799-PA 99..484 16..358 269 23.5 Plus
Dwil\GK19797-PA 657 GK19797-PA 134..522 1..350 263 24.9 Plus
Dwil\GK20065-PA 639 GK20065-PA 56..208 2..158 250 33.1 Plus
Dwil\GK19798-PA 656 GK19798-PA 86..248 4..161 205 30.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17398-PA 543 GE17398-PA 56..416 1..359 1696 93.4 Plus
Dyak\GE17395-PA 623 GE17395-PA 143..503 13..350 256 24 Plus
Dyak\GE17397-PA 647 GE17397-PA 56..212 2..162 254 32.9 Plus
Dyak\GE17394-PA 654 GE17394-PA 86..252 4..166 231 31.7 Plus
Dyak\GE11744-PA 471 GE11744-PA 55..260 2..203 218 30 Plus

RE57622.hyp Sequence

Translation from 443 to 1831

> RE57622.hyp
MAIITSAFFSSMSFAGLFSGSLFQRFGMRQVGVTGGILYFLGTGMQLFAT
STLHLIMAFSVVQGFAFGLMVPTCYTTFNHYFVKNRVMWMSFAQTLIGLG
SMLYPIVMQKLMSWYGFRGCLLILTGLNAHAVFGMLVMHPVEWHMRRVPI
QPEEQEELKELSPTVVIRVQPETPLKATREEPNFHTADPGARKLSHAEEQ
MLKVLSSRASSITSLGNWSGPVVVSDASPQMMHSLQTSRRPSTIAGASGA
VAPAHATKKSWVRTIVDFLDLTLLKKPIFVNIVLGITFALYSDITFFTMQ
PVYLFELGYSRPDTATIIAIGAAADLASRIFLAITAVCIQVPSRYIYLAG
AVFTVFARFGRRTLPWAPRTPFLPLISLIFPQPSTESHSLWAWPASRRSL
DFCAPGSTFHCLWSLPTTCPRKGSPLAMAFSCSSKAMPCSSSVPLLGLFG
TRPGITFSSFTS*

RE57622.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8028-PD 486 CG8028-PD 1..359 1..359 1834 100 Plus
CG8028-PC 563 CG8028-PC 78..436 1..359 1834 100 Plus
CG8051-PB 616 CG8051-PB 136..496 13..350 278 24.9 Plus
CG8051-PA 616 CG8051-PA 136..496 13..350 278 24.9 Plus
CG8034-PA 647 CG8034-PA 56..200 2..146 256 33.8 Plus