BDGP Sequence Production Resources |
Search the DGRC for RE57644
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 576 |
Well: | 44 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG17162-RC |
Protein status: | RE57644.pep: gold |
Preliminary Size: | 1243 |
Sequenced Size: | 3447 |
Gene | Date | Evidence |
---|---|---|
CG40460 | 2001-12-14 | Blastp of sequenced clone |
CG17159 | 2002-01-01 | Sim4 clustering to Release 2 |
CG40460 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17162 | 2008-04-29 | Release 5.5 accounting |
CG17162 | 2008-08-15 | Release 5.9 accounting |
CG17159 | 2008-08-15 | Release 5.9 accounting |
CG17162 | 2008-12-18 | 5.12 accounting |
CG17159 | 2008-12-18 | 5.12 accounting |
3447 bp (3447 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071535
> RE57644.complete AATTCAGTACCAGTATGCGGTCACATTGGATCCGACGATACTACCTATTC GTCCCGCAGCCGACGTCCAGTGTGGTCCGGTAAATTGTCCGACGAGACTT ACAACGACGCAGTGCGTCGCATAAGAAGTGCTCACAGTTGCGAGCAGCTA CGTCACCTGGTCGACCGGATTCCATGGAGAAGGGAGAGCCAAATTGGAAC CAGTGATGAGGTGCCGGTGGCCTCCGTGCACGGAAGCCAAACCAGCGACT GAGGCCGCCTCAATTATAAGATAAATATTAATAAGTGTCCCTCGGAAAGC CCACAACAGCAACTACCGGTGAATTTCCACGGCTATTTGCAACTGGCCAG CAGCTATTACGAACGGGGGTTGCAGGCTAATATAAAGTACCTGCAATCGA TAGGCCAGAGACACCTTAATGCAATAAGGCCGGCGACGGGTTTACTCTTT GACGAAGTGCAGCGTAACGAGAGTCCGGCTGAAAAGTCGGCCAGTCGACT GGTGACGTTGCTCAAGCGTTTGCCACGCAAGGTCAAGAAGAAAGCAGACT ACCGCGGTATTTGGGTGAACATAAGAACAGTTAAACGAGAGAATCTGGCA AAAGTGCAAAGTTCGGATGATAATTTGTACTTCAACTCAGAGCTGAAATT GAACACAGATTATCAGATTACTAGCATGTGTGATTATAGTGACTACGATT ATACAACTTCAGAATTGGATGAACCAACAGGAGCAGAAGGAGAAAGGACT ATAGAACCCACACTGACTGCAGCAACGAGCGAAGCTGCTGTTCAAGTCGC ACACACATCCGCAGACCAACGACGTCTCTATGAGATCATCGACAATCTAA GCTACCTGAGTACTGGGGAGAACAGTTGTCGCAGGCAGCGACTGATACTG ACCCTGCCCCAGATTACGGTGACTGACTATACCGCTCACCAGGTGGCGCC ACATAGAACCAGCTTCGACATTTTTACAATGCAAATACCCAATGAAGATA GACCACCGAACCTTGATCTGAAAGCGACATAGAATCAATATATATAAAAA CAATCGACAATTTAATCGAATAAAATCGTATTAAATCTACAAGAACAAAA AAACGATAGCGAAACCAACAGCATAACCGAACAGATTTCAAAAGCGCGCG CACGTCAGCGGAAATCGTTTATATGCTTAGTACAAAAAACAGAAAACAAA TAAAAAAATAGCGACGCTCGCGCTTCCGAACAATGGTTGTTGCTGTTGTC GCTGCCGACGTCGTTGAAAGAAACAGTAGCAGAAGCGGAATCGACGAAAG TAGTGGTTTCGCTGTTTCTCCATCATTTGTAGGTTCTACACCAGACTCTG TGGTTAAAAGCAATTATACTGATAAGGAAACCACAACAACAAGGGCGGAA CGAAAAGCGCTAGATGACAGTGTTTCTGGCCAGCAAGCGTTAAGAGAGAC TCAAAAGAACTTTTTTCAAAAAAAGTTAAAAATCAACATCACAAACAACA ACATGATTGATGCGGCCGAAGCAACGACAACGACGGAATCGACGCGGTCA ATAAAGGGCATTCCCACCAAGAGTGCCGTCAGCCAGCGAAACGTGGATAT CAAGATAGACAGGACCAGTAACATGGAGGCGGCCACACAAGAGTTAACAA AGAAGGTGCTCAAACTAGATCTTGGCGGCAAGAACCTCGATGAATACTCA CTTAAATCGCCCAAGTCACCTATAGCTGCACGATTGCCGCATCAAACGTC TATAACGTCATCGGTGGATGTAGAGGACAGGAAGACATTACGAGAGGCCT TATACCAGGGAATATTTCATCGGCACCGCCGTACTATTTTTGCCGTGGGC AGTTTCCTGCGTATGCTGCGCAGCCGCAACTCACAATACAATACGATACG CAGCTCTTCGGAAGGCGAGGACATCGATGAGCCGAAGCATCATCCGCAGA AACTTGAGCATTCCCAAGAGTACCTCCAGACACCTGGCCAAGAAGTAACA ACCATATACGCAACATTGCCATTTGAACAACAGGGAAAATCGGATTCGCT TTAAATGTCCCTGCTGCTTGAGATGAATTTTGCTTACTTAATAATGTTTT AAAACGCCGTGTAACCATGAGACTAGCCCCCTTGTGTTAGCATGTAGTGG GCCAAATTAGTTCCGTGCTTAGTATTATAACAATAATACTTGACGGACTG AGGCCAGACTTTATTATCTGCAGGACACGGAATCAACATTTTGCTAGACT TCGCAGCCTTATTGCTTTCATTATTTTAGCAGATTCATACATTTAAGTAA AACAAAGCTGAACCTGAACGTCTTACTTCCAACCTACTTCAACCAATTTA ATTGTATTGAGTTTGCATTGTTTCAGCGCCCAGCACTGTAATTAAGATAA TAATTATGAGTTAAGAACATTCCATTCGTTTGCTTTAAGAGAATGCATAA AATGCCTTTGAATTATGCACTTGTAATCTTACGTGTCACACATACGCCAG ATTTAAAAAAAGTATACTGACCCGGAATCCGGTTGTCTGTTGTTGGCGGT CAAAAATGCAAAAAAAAAAACATTTTTTTTAGCTTGGAAGTCTTTTGTAA TCAAATCAAATTTGGAGGTAAGGTACTTTTTTATGATACACAGTGTAATC TCCCTTTTTTTAATACTTTGTTTTAAAATTTTTTAAATAAATTAAGTGGA ATAAGTATACTTTTCATAGCATTTGGTAGTTGTTAATAGAAATGACATTT GTTGATCTTAACTATACCTGTTACTCTTAGATTAAAAGGTTATACCAAAA TCGTTGGAACTATGTATTAGTCAAAAGAAAACGTTGTCGAATAGTAAAGT AAAAAGGTAGGAACGTCGAAGTTTTAGAAACTCTAGGCAGAGGGAAGCTA ACAATGATAATCTGGAAATTATGCTTACAAACAACACTCCTATACATTTA CATTTTTTTTTTTCAATTTAAATTTAAATTAATATACTGTGGACTTAAAA TCTGATCATTTTTCAAAGGGCAAGAACAAAATAAGCAAATATTTGTTATT AGTTCAGTAAAAAAGTTAAATCACAAAGTGCTGGGCAGCAAAACAGGCAT ATCGTAGATATCAATTATAAGTGATGTGCTTGTTGTTAAATGTAATTTGT TAGATTTTGTTTTTTCATTGCAATGGGAACAAAACTTATAAAGCCGCATT AGAAAAAATGTTTTTAAACAATGAACAAATTGATGTATTGCGTAAACACC TAATATATATTTAGCTACTATATAAGCTATAACCATACATATATGTATGT ATATTGATATATTTGAATGAACATGTCCTAGTTATAGAACATATATGATT GTTGTTGTCTCCATTAACATATGAAATGTAAATTATTTTCTGTTGCGATT CCACATAGAATATCCATTAAATAATGTTAAACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17162-RF | 3431 | CG17162-RF | 1..3431 | 1..3432 | 17105 | 99.9 | Plus |
CG17162-RB | 3819 | CG17162-RB | 417..3819 | 29..3432 | 16965 | 99.9 | Plus |
CG17159-RB | 3819 | CG17159-RB | 417..3819 | 29..3432 | 16965 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrXHet | 204175 | chrXHet | 67590..69289 | 1728..29 | 8485 | 99.9 | Minus |
chrXHet | 204175 | chrXHet | 64606..66109 | 3432..1930 | 7380 | 99.5 | Minus |
chrXHet | 204175 | chrXHet | 66181..66384 | 1931..1728 | 1020 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 23088715..23090414 | 1728..29 | 8485 | 99.9 | Minus |
X | 23542271 | X | 23085730..23087232 | 3433..1930 | 7470 | 99.9 | Minus |
X | 23542271 | X | 23087304..23087507 | 1931..1728 | 1020 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 23073807..23075506 | 1728..29 | 8485 | 99.9 | Minus |
X | 23527363 | X | 23070822..23072324 | 3433..1930 | 7480 | 99.9 | Minus |
X | 23527363 | X | 23072396..23072599 | 1931..1728 | 1020 | 100 | Minus |
X | 23527363 | X | 23081799..23081827 | 29..1 | 145 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 4253..4308 | 2441..2385 | 129 | 71.9 | Minus |
blood | 7410 | blood BLOOD 7410bp | 3741..3855 | 946..1065 | 119 | 59.2 | Plus |
Tc1 | 1666 | Tc1 TC1 1666bp | 1352..1526 | 3251..3429 | 118 | 56.4 | Plus |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 2455..2578 | 2830..2710 | 117 | 58.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrXHet | 64606..66107 | 1932..3432 | 99 | <- | Minus |
chrXHet | 66181..66383 | 1729..1931 | 100 | <- | Minus |
chrXHet | 67590..69288 | 30..1728 | 99 | <- | Minus |
chrXHet | 75582..75610 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17159-RA | 1..1032 | 1..1032 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17159-RA | 1..1032 | 1..1032 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17159-RF | 306..1311 | 24..1032 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17159-RA | 1..1032 | 1..1032 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17159-RF | 306..1311 | 24..1032 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17159-RA | 1..3431 | 1..3432 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17162-RF | 1..3431 | 1..3432 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17162-RF | 1..3431 | 1..3432 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17159-RA | 1..3431 | 1..3432 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17162-RF | 1..3431 | 1..3432 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23085731..23087230 | 1932..3432 | 99 | <- | Minus |
X | 23087304..23087506 | 1729..1931 | 100 | <- | Minus |
X | 23088715..23090413 | 30..1728 | 99 | <- | Minus |
X | 23096707..23096735 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23085731..23087230 | 1932..3432 | 99 | <- | Minus |
X | 23087304..23087506 | 1729..1931 | 100 | <- | Minus |
X | 23088715..23090413 | 30..1728 | 99 | <- | Minus |
X | 23096707..23096735 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23085731..23087230 | 1932..3432 | 99 | <- | Minus |
X | 23087304..23087506 | 1729..1931 | 100 | <- | Minus |
X | 23088715..23090413 | 30..1728 | 99 | <- | Minus |
X | 23096707..23096735 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XHet | 64549..66048 | 1932..3432 | 99 | <- | Minus |
XHet | 66122..66324 | 1729..1931 | 100 | <- | Minus |
XHet | 67533..69231 | 30..1728 | 99 | <- | Minus |
XHet | 75525..75553 | 1..29 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23070823..23072322 | 1932..3432 | 99 | <- | Minus |
X | 23072396..23072598 | 1729..1931 | 100 | <- | Minus |
X | 23073807..23075505 | 30..1728 | 99 | <- | Minus |
X | 23081799..23081827 | 1..29 | 100 | Minus |
Translation from 0 to 1031
> RE57644.hyp NSVPVCGHIGSDDTTYSSRSRRPVWSGKLSDETYNDAVRRIRSAHSCEQL RHLVDRIPWRRESQIGTSDEVPVASVHGSQTSDCGRLNYKININKCPSES PQQQLPVNFHGYLQLASSYYERGLQANIKYLQSIGQRHLNAIRPATGLLF DEVQRNESPAEKSASRLVTLLKRLPRKVKKKADYRGIWVNIRTVKRENLA KVQSSDDNLYFNSELKLNTDYQITSMCDYSDYDYTTSELDEPTGAEGERT IEPTLTAATSEAAVQVAHTSADQRRLYEIIDNLSYLSTGENSCRRQRLIL TLPQITVTDYTAHQVAPHRTSFDIFTMQIPNEDRPPNLDLKAT*
Translation from 1232 to 2053
> RE57644.pep MVVAVVAADVVERNSSRSGIDESSGFAVSPSFVGSTPDSVVKSNYTDKET TTTRAERKALDDSVSGQQALRETQKNFFQKKLKINITNNNMIDAAEATTT TESTRSIKGIPTKSAVSQRNVDIKIDRTSNMEAATQELTKKVLKLDLGGK NLDEYSLKSPKSPIAARLPHQTSITSSVDVEDRKTLREALYQGIFHRHRR TIFAVGSFLRMLRSRNSQYNTIRSSSEGEDIDEPKHHPQKLEHSQEYLQT PGQEVTTIYATLPFEQQGKSDSL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22026-PA | 253 | GF22026-PA | 128..251 | 110..233 | 635 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17495-PA | 181 | GG17495-PA | 1..181 | 91..273 | 827 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12664-PA | 278 | GH12664-PA | 154..276 | 111..233 | 628 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17162-PH | 273 | CG17162-PH | 1..273 | 1..273 | 1362 | 100 | Plus |
CG17162-PF | 273 | CG17162-PF | 1..273 | 1..273 | 1362 | 100 | Plus |
CG17162-PC | 273 | CG17162-PC | 1..273 | 1..273 | 1362 | 100 | Plus |
CG17162-PE | 273 | CG17162-PE | 1..273 | 1..273 | 1362 | 100 | Plus |
CG17162-PD | 273 | CG17162-PD | 1..273 | 1..273 | 1362 | 100 | Plus |
CG17162-PB | 273 | CG17162-PB | 1..273 | 1..273 | 1362 | 100 | Plus |
CG17162-PG | 274 | CG17162-PG | 1..274 | 1..273 | 1350 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21680-PA | 270 | GI21680-PA | 148..270 | 113..235 | 606 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18233-PA | 225 | GL18233-PA | 67..223 | 87..233 | 594 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27898-PA | 224 | GA27898-PA | 66..222 | 87..233 | 594 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13286-PA | 145 | GM13286-PA | 16..143 | 106..233 | 634 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16708-PA | 271 | GJ16708-PA | 149..271 | 113..235 | 623 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25192-PA | 360 | GK25192-PA | 192..315 | 110..233 | 608 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15252-PA | 281 | GE15252-PA | 12..281 | 12..273 | 1065 | 80 | Plus |