Clone RE57644 Report

Search the DGRC for RE57644

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:576
Well:44
Vector:pFlc-1
Associated Gene/TranscriptCG17162-RC
Protein status:RE57644.pep: gold
Preliminary Size:1243
Sequenced Size:3447

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG40460 2001-12-14 Blastp of sequenced clone
CG17159 2002-01-01 Sim4 clustering to Release 2
CG40460 2003-01-01 Sim4 clustering to Release 3
CG17162 2008-04-29 Release 5.5 accounting
CG17162 2008-08-15 Release 5.9 accounting
CG17159 2008-08-15 Release 5.9 accounting
CG17162 2008-12-18 5.12 accounting
CG17159 2008-12-18 5.12 accounting

Clone Sequence Records

RE57644.complete Sequence

3447 bp (3447 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071535

> RE57644.complete
AATTCAGTACCAGTATGCGGTCACATTGGATCCGACGATACTACCTATTC
GTCCCGCAGCCGACGTCCAGTGTGGTCCGGTAAATTGTCCGACGAGACTT
ACAACGACGCAGTGCGTCGCATAAGAAGTGCTCACAGTTGCGAGCAGCTA
CGTCACCTGGTCGACCGGATTCCATGGAGAAGGGAGAGCCAAATTGGAAC
CAGTGATGAGGTGCCGGTGGCCTCCGTGCACGGAAGCCAAACCAGCGACT
GAGGCCGCCTCAATTATAAGATAAATATTAATAAGTGTCCCTCGGAAAGC
CCACAACAGCAACTACCGGTGAATTTCCACGGCTATTTGCAACTGGCCAG
CAGCTATTACGAACGGGGGTTGCAGGCTAATATAAAGTACCTGCAATCGA
TAGGCCAGAGACACCTTAATGCAATAAGGCCGGCGACGGGTTTACTCTTT
GACGAAGTGCAGCGTAACGAGAGTCCGGCTGAAAAGTCGGCCAGTCGACT
GGTGACGTTGCTCAAGCGTTTGCCACGCAAGGTCAAGAAGAAAGCAGACT
ACCGCGGTATTTGGGTGAACATAAGAACAGTTAAACGAGAGAATCTGGCA
AAAGTGCAAAGTTCGGATGATAATTTGTACTTCAACTCAGAGCTGAAATT
GAACACAGATTATCAGATTACTAGCATGTGTGATTATAGTGACTACGATT
ATACAACTTCAGAATTGGATGAACCAACAGGAGCAGAAGGAGAAAGGACT
ATAGAACCCACACTGACTGCAGCAACGAGCGAAGCTGCTGTTCAAGTCGC
ACACACATCCGCAGACCAACGACGTCTCTATGAGATCATCGACAATCTAA
GCTACCTGAGTACTGGGGAGAACAGTTGTCGCAGGCAGCGACTGATACTG
ACCCTGCCCCAGATTACGGTGACTGACTATACCGCTCACCAGGTGGCGCC
ACATAGAACCAGCTTCGACATTTTTACAATGCAAATACCCAATGAAGATA
GACCACCGAACCTTGATCTGAAAGCGACATAGAATCAATATATATAAAAA
CAATCGACAATTTAATCGAATAAAATCGTATTAAATCTACAAGAACAAAA
AAACGATAGCGAAACCAACAGCATAACCGAACAGATTTCAAAAGCGCGCG
CACGTCAGCGGAAATCGTTTATATGCTTAGTACAAAAAACAGAAAACAAA
TAAAAAAATAGCGACGCTCGCGCTTCCGAACAATGGTTGTTGCTGTTGTC
GCTGCCGACGTCGTTGAAAGAAACAGTAGCAGAAGCGGAATCGACGAAAG
TAGTGGTTTCGCTGTTTCTCCATCATTTGTAGGTTCTACACCAGACTCTG
TGGTTAAAAGCAATTATACTGATAAGGAAACCACAACAACAAGGGCGGAA
CGAAAAGCGCTAGATGACAGTGTTTCTGGCCAGCAAGCGTTAAGAGAGAC
TCAAAAGAACTTTTTTCAAAAAAAGTTAAAAATCAACATCACAAACAACA
ACATGATTGATGCGGCCGAAGCAACGACAACGACGGAATCGACGCGGTCA
ATAAAGGGCATTCCCACCAAGAGTGCCGTCAGCCAGCGAAACGTGGATAT
CAAGATAGACAGGACCAGTAACATGGAGGCGGCCACACAAGAGTTAACAA
AGAAGGTGCTCAAACTAGATCTTGGCGGCAAGAACCTCGATGAATACTCA
CTTAAATCGCCCAAGTCACCTATAGCTGCACGATTGCCGCATCAAACGTC
TATAACGTCATCGGTGGATGTAGAGGACAGGAAGACATTACGAGAGGCCT
TATACCAGGGAATATTTCATCGGCACCGCCGTACTATTTTTGCCGTGGGC
AGTTTCCTGCGTATGCTGCGCAGCCGCAACTCACAATACAATACGATACG
CAGCTCTTCGGAAGGCGAGGACATCGATGAGCCGAAGCATCATCCGCAGA
AACTTGAGCATTCCCAAGAGTACCTCCAGACACCTGGCCAAGAAGTAACA
ACCATATACGCAACATTGCCATTTGAACAACAGGGAAAATCGGATTCGCT
TTAAATGTCCCTGCTGCTTGAGATGAATTTTGCTTACTTAATAATGTTTT
AAAACGCCGTGTAACCATGAGACTAGCCCCCTTGTGTTAGCATGTAGTGG
GCCAAATTAGTTCCGTGCTTAGTATTATAACAATAATACTTGACGGACTG
AGGCCAGACTTTATTATCTGCAGGACACGGAATCAACATTTTGCTAGACT
TCGCAGCCTTATTGCTTTCATTATTTTAGCAGATTCATACATTTAAGTAA
AACAAAGCTGAACCTGAACGTCTTACTTCCAACCTACTTCAACCAATTTA
ATTGTATTGAGTTTGCATTGTTTCAGCGCCCAGCACTGTAATTAAGATAA
TAATTATGAGTTAAGAACATTCCATTCGTTTGCTTTAAGAGAATGCATAA
AATGCCTTTGAATTATGCACTTGTAATCTTACGTGTCACACATACGCCAG
ATTTAAAAAAAGTATACTGACCCGGAATCCGGTTGTCTGTTGTTGGCGGT
CAAAAATGCAAAAAAAAAAACATTTTTTTTAGCTTGGAAGTCTTTTGTAA
TCAAATCAAATTTGGAGGTAAGGTACTTTTTTATGATACACAGTGTAATC
TCCCTTTTTTTAATACTTTGTTTTAAAATTTTTTAAATAAATTAAGTGGA
ATAAGTATACTTTTCATAGCATTTGGTAGTTGTTAATAGAAATGACATTT
GTTGATCTTAACTATACCTGTTACTCTTAGATTAAAAGGTTATACCAAAA
TCGTTGGAACTATGTATTAGTCAAAAGAAAACGTTGTCGAATAGTAAAGT
AAAAAGGTAGGAACGTCGAAGTTTTAGAAACTCTAGGCAGAGGGAAGCTA
ACAATGATAATCTGGAAATTATGCTTACAAACAACACTCCTATACATTTA
CATTTTTTTTTTTCAATTTAAATTTAAATTAATATACTGTGGACTTAAAA
TCTGATCATTTTTCAAAGGGCAAGAACAAAATAAGCAAATATTTGTTATT
AGTTCAGTAAAAAAGTTAAATCACAAAGTGCTGGGCAGCAAAACAGGCAT
ATCGTAGATATCAATTATAAGTGATGTGCTTGTTGTTAAATGTAATTTGT
TAGATTTTGTTTTTTCATTGCAATGGGAACAAAACTTATAAAGCCGCATT
AGAAAAAATGTTTTTAAACAATGAACAAATTGATGTATTGCGTAAACACC
TAATATATATTTAGCTACTATATAAGCTATAACCATACATATATGTATGT
ATATTGATATATTTGAATGAACATGTCCTAGTTATAGAACATATATGATT
GTTGTTGTCTCCATTAACATATGAAATGTAAATTATTTTCTGTTGCGATT
CCACATAGAATATCCATTAAATAATGTTAAACAAAAAAAAAAAAAAA

RE57644.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17162-RF 3431 CG17162-RF 1..3431 1..3432 17105 99.9 Plus
CG17162-RB 3819 CG17162-RB 417..3819 29..3432 16965 99.9 Plus
CG17159-RB 3819 CG17159-RB 417..3819 29..3432 16965 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
chrXHet 204175 chrXHet 67590..69289 1728..29 8485 99.9 Minus
chrXHet 204175 chrXHet 64606..66109 3432..1930 7380 99.5 Minus
chrXHet 204175 chrXHet 66181..66384 1931..1728 1020 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23088715..23090414 1728..29 8485 99.9 Minus
X 23542271 X 23085730..23087232 3433..1930 7470 99.9 Minus
X 23542271 X 23087304..23087507 1931..1728 1020 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 23073807..23075506 1728..29 8485 99.9 Minus
X 23527363 X 23070822..23072324 3433..1930 7480 99.9 Minus
X 23527363 X 23072396..23072599 1931..1728 1020 100 Minus
X 23527363 X 23081799..23081827 29..1 145 100 Minus
Blast to na_te.dros performed 2019-03-15 16:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 4253..4308 2441..2385 129 71.9 Minus
blood 7410 blood BLOOD 7410bp 3741..3855 946..1065 119 59.2 Plus
Tc1 1666 Tc1 TC1 1666bp 1352..1526 3251..3429 118 56.4 Plus
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2455..2578 2830..2710 117 58.4 Minus

RE57644.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:33:45 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
chrXHet 64606..66107 1932..3432 99 <- Minus
chrXHet 66181..66383 1729..1931 100 <- Minus
chrXHet 67590..69288 30..1728 99 <- Minus
chrXHet 75582..75610 1..29 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:49:41 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
CG17159-RA 1..1032 1..1032 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:05:23 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
CG17159-RA 1..1032 1..1032 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:04:41 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
CG17159-RF 306..1311 24..1032 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:00 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
CG17159-RA 1..1032 1..1032 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:19 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
CG17159-RF 306..1311 24..1032 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:40 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
CG17159-RA 1..3431 1..3432 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:05:22 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
CG17162-RF 1..3431 1..3432 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:41 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
CG17162-RF 1..3431 1..3432 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:01 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
CG17159-RA 1..3431 1..3432 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:19 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
CG17162-RF 1..3431 1..3432 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:45 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
X 23085731..23087230 1932..3432 99 <- Minus
X 23087304..23087506 1729..1931 100 <- Minus
X 23088715..23090413 30..1728 99 <- Minus
X 23096707..23096735 1..29 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:45 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
X 23085731..23087230 1932..3432 99 <- Minus
X 23087304..23087506 1729..1931 100 <- Minus
X 23088715..23090413 30..1728 99 <- Minus
X 23096707..23096735 1..29 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:33:45 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
X 23085731..23087230 1932..3432 99 <- Minus
X 23087304..23087506 1729..1931 100 <- Minus
X 23088715..23090413 30..1728 99 <- Minus
X 23096707..23096735 1..29 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:41 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 64549..66048 1932..3432 99 <- Minus
XHet 66122..66324 1729..1931 100 <- Minus
XHet 67533..69231 30..1728 99 <- Minus
XHet 75525..75553 1..29 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:06:09 Download gff for RE57644.complete
Subject Subject Range Query Range Percent Splice Strand
X 23070823..23072322 1932..3432 99 <- Minus
X 23072396..23072598 1729..1931 100 <- Minus
X 23073807..23075505 30..1728 99 <- Minus
X 23081799..23081827 1..29 100   Minus

RE57644.hyp Sequence

Translation from 0 to 1031

> RE57644.hyp
NSVPVCGHIGSDDTTYSSRSRRPVWSGKLSDETYNDAVRRIRSAHSCEQL
RHLVDRIPWRRESQIGTSDEVPVASVHGSQTSDCGRLNYKININKCPSES
PQQQLPVNFHGYLQLASSYYERGLQANIKYLQSIGQRHLNAIRPATGLLF
DEVQRNESPAEKSASRLVTLLKRLPRKVKKKADYRGIWVNIRTVKRENLA
KVQSSDDNLYFNSELKLNTDYQITSMCDYSDYDYTTSELDEPTGAEGERT
IEPTLTAATSEAAVQVAHTSADQRRLYEIIDNLSYLSTGENSCRRQRLIL
TLPQITVTDYTAHQVAPHRTSFDIFTMQIPNEDRPPNLDLKAT*

RE57644.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17159-PB 436 CG17159-PB 104..436 11..343 1728 100 Plus
CG17159-PF 436 CG17159-PF 104..436 11..343 1728 100 Plus

RE57644.pep Sequence

Translation from 1232 to 2053

> RE57644.pep
MVVAVVAADVVERNSSRSGIDESSGFAVSPSFVGSTPDSVVKSNYTDKET
TTTRAERKALDDSVSGQQALRETQKNFFQKKLKINITNNNMIDAAEATTT
TESTRSIKGIPTKSAVSQRNVDIKIDRTSNMEAATQELTKKVLKLDLGGK
NLDEYSLKSPKSPIAARLPHQTSITSSVDVEDRKTLREALYQGIFHRHRR
TIFAVGSFLRMLRSRNSQYNTIRSSSEGEDIDEPKHHPQKLEHSQEYLQT
PGQEVTTIYATLPFEQQGKSDSL*

RE57644.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22026-PA 253 GF22026-PA 128..251 110..233 635 94.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17495-PA 181 GG17495-PA 1..181 91..273 827 86.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12664-PA 278 GH12664-PA 154..276 111..233 628 95.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17162-PH 273 CG17162-PH 1..273 1..273 1362 100 Plus
CG17162-PF 273 CG17162-PF 1..273 1..273 1362 100 Plus
CG17162-PC 273 CG17162-PC 1..273 1..273 1362 100 Plus
CG17162-PE 273 CG17162-PE 1..273 1..273 1362 100 Plus
CG17162-PD 273 CG17162-PD 1..273 1..273 1362 100 Plus
CG17162-PB 273 CG17162-PB 1..273 1..273 1362 100 Plus
CG17162-PG 274 CG17162-PG 1..274 1..273 1350 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21680-PA 270 GI21680-PA 148..270 113..235 606 91.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18233-PA 225 GL18233-PA 67..223 87..233 594 73.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27898-PA 224 GA27898-PA 66..222 87..233 594 73.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13286-PA 145 GM13286-PA 16..143 106..233 634 93 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16708-PA 271 GJ16708-PA 149..271 113..235 623 94.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25192-PA 360 GK25192-PA 192..315 110..233 608 90.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15252-PA 281 GE15252-PA 12..281 12..273 1065 80 Plus