Clone RE57702 Report

Search the DGRC for RE57702

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:577
Well:2
Vector:pFlc-1
Associated Gene/TranscriptTrp1-RB
Protein status:RE57702.pep: gold
Sequenced Size:2103

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Trp1-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

RE57702.complete Sequence

2103 bp assembled on 2009-09-23

GenBank Submission: BT099837.1

> RE57702.complete
ACTTTCTAGACTCTCAGAGCGAATGCAACACGTCACGGCTAAGAAAAACT
ACAACCGCTTCTGGAATAGTTGTTTCTATTTATATAGTTCGCAGTTTTTA
AGTTACGCATATTAATTCTCGTAATGAGTGGAGAGGAGGAGTACTTCCAG
GAGGAGGAAGAAGAGGAGCAGGAGCAGGATATTTACGACGATGGCACGGA
ATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGACGAGA
AGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGACCAAA
TTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCGATGC
TCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACCACCC
GGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTTCTTC
CATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAAAGTC
TGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAAAAGG
ACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAATGGC
CAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAAAGGA
GAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATCTTCG
TGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCTCCAC
TACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTTGCCT
ATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTGTCCA
TTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGTACGT
CTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTTGCACTT
CTGGATCTTCCCCAACCTGACTGAGGATGTGAGCTTCTTCGCCTCCTTCT
GGCCACTATATGAGAGCAACTATAACAGTGACCCAAATAATTCGTCCGCC
AAGACCGACAAGAAATCGAAATCGAAGGACAAGAAGAAGGAAAAAGAAAG
CGATGCCGAGGACACAGCCGTGGATGCGGATGGAGACGCTGACGGTGATG
TGGATGCTGAGGTTTCCACGCTTGAACCAGAGAAAATCGAGCTCATCAAA
GAACATGACACCGACATGGAGATCCGCAAACGTCGCAAAGTGGGTGCCGA
TGACTACGAGGAAGACGATGTGGATGAAGAAGAAACGAAGGCGCAGCCCA
AGGATTCCAAAGCTGGAACGCCACGCAACTCGGGATCGGATTCGGAGAGC
TCGAGTAAAGATTACGAGATAATCAGTTCAAGTGAAGTCCAAAACGTTGC
TGGCAACTAATATGAAGAAACCACAATATATATATATATTATTATTTAAT
GATCCACATCTAGCTAATTGATAAGACATAGAACAAGAATCACACATCAA
GTACATCAGCAAACACACACGATTCCAAGTACAGCGAATTATTGTCCCAC
AAGAAATGCGATCGGTGTCGTTATTCTTTATTGAAGATTTCCTAATCTGC
TTTAAATTGAGCTTAGGTTTGAGGTTTTGCAATATTTTTTATTGTTGGAT
GTAGGCTTGCATATGAAACACAATATTTTTAAACGGAATATTATGTGAGA
CAAAGACATTTGGTTATGCACCATGCAGTTGGACATCTTTTTTTCGCAAA
AGTTCTTAAGCCGTTAAACAAACTACCTATATTTTACCTATTTGTATTCC
TATGTTTGTAAATGTATACAGTGGAACGCACTAGGCAGGTGCAAGAAACG
ATTGCAATTGATAATAATCATAGCGAGTACGTACGTAGATGTGAGCGCAT
ACGTTTCTATGTGCATGAATATTTACTCTACATGTAATTAAAGCAAACTA
ACAACTTAATGAAATTAGTAGTGTAACACGCAATTAACTATTATATAAAT
AAAGCTAGGCAATTCTGATCTGATGTGAGAGATATTTGAGCGTTTTTTAG
TTCTTGCTCGAACGTTTTATTAAAAAATATACAACACAAAAAAAAAAAAA
AAA

RE57702.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RB 2118 Trp1-RB 22..2107 1..2086 10430 100 Plus
Trp1.c 1959 Trp1.c 69..1957 198..2086 9445 100 Plus
Trp1.b 2015 Trp1.b 126..2013 199..2086 9440 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10009701..10010517 198..1014 4085 100 Plus
chr2L 23010047 chr2L 10011365..10012135 1316..2086 3855 100 Plus
chr2L 23010047 chr2L 10010570..10010873 1013..1316 1520 100 Plus
chr2L 23010047 chr2L 10009325..10009523 1..199 995 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010736..10011552 198..1014 4085 100 Plus
2L 23513712 2L 10012399..10013169 1316..2086 3855 100 Plus
2L 23513712 2L 10011605..10011908 1013..1316 1520 100 Plus
2L 23513712 2L 10010360..10010558 1..199 995 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010736..10011552 198..1014 4085 100 Plus
2L 23513712 2L 10012399..10013169 1316..2086 3855 100 Plus
2L 23513712 2L 10011605..10011908 1013..1316 1520 100 Plus
2L 23513712 2L 10010360..10010558 1..199 995 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:00:26 has no hits.

RE57702.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:01:22 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10009702..10010010 199..507 100 == Plus
chr2L 10010164..10010517 661..1014 100 -> Plus
chr2L 10010572..10010873 1015..1316 100 -> Plus
chr2L 10011366..10012135 1317..2087 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:55:22 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 1..1287 124..1410 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:33:27 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 1..1287 124..1410 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:10:57 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 1..1287 124..1410 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:52:32 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 1..1287 124..1410 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-25 08:14:28 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 1..2086 1..2087 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:33:27 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 1..2086 1..2087 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:10:57 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 7..2092 1..2087 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:52:32 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RB 7..2092 1..2087 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:01:22 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10010360..10010557 1..198 100 -> Plus
2L 10010737..10011552 199..1014 100 -> Plus
2L 10011607..10011908 1015..1316 100 -> Plus
2L 10012400..10013169 1317..2087 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:01:22 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10010360..10010557 1..198 100 -> Plus
2L 10010737..10011552 199..1014 100 -> Plus
2L 10011607..10011908 1015..1316 100 -> Plus
2L 10012400..10013169 1317..2087 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:01:22 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10010360..10010557 1..198 100 -> Plus
2L 10010737..10011552 199..1014 100 -> Plus
2L 10011607..10011908 1015..1316 100 -> Plus
2L 10012400..10013169 1317..2087 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:10:57 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10010360..10010557 1..198 100 -> Plus
arm_2L 10010737..10011552 199..1014 100 -> Plus
arm_2L 10011607..10011908 1015..1316 100 -> Plus
arm_2L 10012400..10013169 1317..2087 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:17:44 Download gff for RE57702.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10010737..10011552 199..1014 100 -> Plus
2L 10011607..10011908 1015..1316 100 -> Plus
2L 10012400..10013169 1317..2087 99   Plus
2L 10010360..10010557 1..198 100 -> Plus

RE57702.pep Sequence

Translation from 123 to 1409

> RE57702.pep
MSGEEEYFQEEEEEEQEQDIYDDGTEYTEPGAQKVDKPSKDEKNVAKWLK
KNVKTKKTKFLSHIVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFL
DVMLEHKFFHRAKKVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKK
DTDPEGDNGQGDGGASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYV
WIYDPIPLHYWIFGFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLV
FILALTIVRLIVFIIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNY
NSDPNNSSAKTDKKSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTL
EPEKIELIKEHDTDMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTP
RNSGSDSESSSKDYEIISSSEVQNVAGN*

RE57702.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15737-PA 422 GF15737-PA 18..422 22..428 1461 85.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10077-PA 423 GG10077-PA 13..423 26..428 1500 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11069-PA 453 GH11069-PA 24..453 21..428 1290 72.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-PB 428 CG4758-PB 1..428 1..428 2235 100 Plus
Trp1-PA 415 CG4758-PA 13..415 26..428 2102 100 Plus
Trp1-PC 398 CG4758-PC 1..398 1..398 2088 100 Plus
Trp1-PD 385 CG4758-PD 13..385 26..398 1955 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17586-PA 427 GI17586-PA 13..427 26..428 1305 73.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18954-PA 413 GL18954-PA 1..413 1..428 1458 82 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18410-PA 413 GA18410-PA 1..413 1..428 1458 82 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17862-PA 409 GM17862-PA 17..409 19..428 1441 90 Plus
Dsec\GM18782-PA 268 GM18782-PA 1..268 1..268 1330 95.2 Plus
Dsec\GM11063-PA 326 GM11063-PA 2..326 106..428 1173 92.9 Plus
Dsec\GM11065-PA 256 GM11065-PA 2..256 106..398 789 79 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23649-PA 447 GD23649-PA 36..447 19..428 1571 94.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17928-PA 438 GJ17928-PA 13..438 26..428 1284 74.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12718-PA 427 GK12718-PA 13..427 26..428 1399 75.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18890-PA 417 GE18890-PA 13..417 26..428 2028 96 Plus

RE57702.hyp Sequence

Translation from 123 to 1409

> RE57702.hyp
MSGEEEYFQEEEEEEQEQDIYDDGTEYTEPGAQKVDKPSKDEKNVAKWLK
KNVKTKKTKFLSHIVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFL
DVMLEHKFFHRAKKVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKK
DTDPEGDNGQGDGGASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYV
WIYDPIPLHYWIFGFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLV
FILALTIVRLIVFIIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNY
NSDPNNSSAKTDKKSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTL
EPEKIELIKEHDTDMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTP
RNSGSDSESSSKDYEIISSSEVQNVAGN*

RE57702.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-PB 428 CG4758-PB 1..428 1..428 2235 100 Plus
Trp1-PA 415 CG4758-PA 13..415 26..428 2102 100 Plus
Trp1-PC 398 CG4758-PC 1..398 1..398 2088 100 Plus
Trp1-PD 385 CG4758-PD 13..385 26..398 1955 100 Plus