BDGP Sequence Production Resources |
Search the DGRC for RE57702
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 577 |
Well: | 2 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Trp1-RB |
Protein status: | RE57702.pep: gold |
Sequenced Size: | 2103 |
Gene | Date | Evidence |
---|---|---|
Trp1-RB | 2009-06-22 | Replacement based on scoring |
2103 bp assembled on 2009-09-23
GenBank Submission: BT099837.1
> RE57702.complete ACTTTCTAGACTCTCAGAGCGAATGCAACACGTCACGGCTAAGAAAAACT ACAACCGCTTCTGGAATAGTTGTTTCTATTTATATAGTTCGCAGTTTTTA AGTTACGCATATTAATTCTCGTAATGAGTGGAGAGGAGGAGTACTTCCAG GAGGAGGAAGAAGAGGAGCAGGAGCAGGATATTTACGACGATGGCACGGA ATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGACGAGA AGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGACCAAA TTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCGATGC TCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACCACCC GGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTTCTTC CATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAAAGTC TGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAAAAGG ACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAATGGC CAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAAAGGA GAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATCTTCG TGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCTCCAC TACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTTGCCT ATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTGTCCA TTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGTACGT CTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTTGCACTT CTGGATCTTCCCCAACCTGACTGAGGATGTGAGCTTCTTCGCCTCCTTCT GGCCACTATATGAGAGCAACTATAACAGTGACCCAAATAATTCGTCCGCC AAGACCGACAAGAAATCGAAATCGAAGGACAAGAAGAAGGAAAAAGAAAG CGATGCCGAGGACACAGCCGTGGATGCGGATGGAGACGCTGACGGTGATG TGGATGCTGAGGTTTCCACGCTTGAACCAGAGAAAATCGAGCTCATCAAA GAACATGACACCGACATGGAGATCCGCAAACGTCGCAAAGTGGGTGCCGA TGACTACGAGGAAGACGATGTGGATGAAGAAGAAACGAAGGCGCAGCCCA AGGATTCCAAAGCTGGAACGCCACGCAACTCGGGATCGGATTCGGAGAGC TCGAGTAAAGATTACGAGATAATCAGTTCAAGTGAAGTCCAAAACGTTGC TGGCAACTAATATGAAGAAACCACAATATATATATATATTATTATTTAAT GATCCACATCTAGCTAATTGATAAGACATAGAACAAGAATCACACATCAA GTACATCAGCAAACACACACGATTCCAAGTACAGCGAATTATTGTCCCAC AAGAAATGCGATCGGTGTCGTTATTCTTTATTGAAGATTTCCTAATCTGC TTTAAATTGAGCTTAGGTTTGAGGTTTTGCAATATTTTTTATTGTTGGAT GTAGGCTTGCATATGAAACACAATATTTTTAAACGGAATATTATGTGAGA CAAAGACATTTGGTTATGCACCATGCAGTTGGACATCTTTTTTTCGCAAA AGTTCTTAAGCCGTTAAACAAACTACCTATATTTTACCTATTTGTATTCC TATGTTTGTAAATGTATACAGTGGAACGCACTAGGCAGGTGCAAGAAACG ATTGCAATTGATAATAATCATAGCGAGTACGTACGTAGATGTGAGCGCAT ACGTTTCTATGTGCATGAATATTTACTCTACATGTAATTAAAGCAAACTA ACAACTTAATGAAATTAGTAGTGTAACACGCAATTAACTATTATATAAAT AAAGCTAGGCAATTCTGATCTGATGTGAGAGATATTTGAGCGTTTTTTAG TTCTTGCTCGAACGTTTTATTAAAAAATATACAACACAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 10009701..10010517 | 198..1014 | 4085 | 100 | Plus |
chr2L | 23010047 | chr2L | 10011365..10012135 | 1316..2086 | 3855 | 100 | Plus |
chr2L | 23010047 | chr2L | 10010570..10010873 | 1013..1316 | 1520 | 100 | Plus |
chr2L | 23010047 | chr2L | 10009325..10009523 | 1..199 | 995 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10010736..10011552 | 198..1014 | 4085 | 100 | Plus |
2L | 23513712 | 2L | 10012399..10013169 | 1316..2086 | 3855 | 100 | Plus |
2L | 23513712 | 2L | 10011605..10011908 | 1013..1316 | 1520 | 100 | Plus |
2L | 23513712 | 2L | 10010360..10010558 | 1..199 | 995 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10010736..10011552 | 198..1014 | 4085 | 100 | Plus |
2L | 23513712 | 2L | 10012399..10013169 | 1316..2086 | 3855 | 100 | Plus |
2L | 23513712 | 2L | 10011605..10011908 | 1013..1316 | 1520 | 100 | Plus |
2L | 23513712 | 2L | 10010360..10010558 | 1..199 | 995 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 10009702..10010010 | 199..507 | 100 | == | Plus |
chr2L | 10010164..10010517 | 661..1014 | 100 | -> | Plus |
chr2L | 10010572..10010873 | 1015..1316 | 100 | -> | Plus |
chr2L | 10011366..10012135 | 1317..2087 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RB | 1..1287 | 124..1410 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RB | 1..1287 | 124..1410 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RB | 1..1287 | 124..1410 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RB | 1..1287 | 124..1410 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RB | 1..2086 | 1..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RB | 1..2086 | 1..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RB | 7..2092 | 1..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RB | 7..2092 | 1..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10010360..10010557 | 1..198 | 100 | -> | Plus |
2L | 10010737..10011552 | 199..1014 | 100 | -> | Plus |
2L | 10011607..10011908 | 1015..1316 | 100 | -> | Plus |
2L | 10012400..10013169 | 1317..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10010360..10010557 | 1..198 | 100 | -> | Plus |
2L | 10010737..10011552 | 199..1014 | 100 | -> | Plus |
2L | 10011607..10011908 | 1015..1316 | 100 | -> | Plus |
2L | 10012400..10013169 | 1317..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10010360..10010557 | 1..198 | 100 | -> | Plus |
2L | 10010737..10011552 | 199..1014 | 100 | -> | Plus |
2L | 10011607..10011908 | 1015..1316 | 100 | -> | Plus |
2L | 10012400..10013169 | 1317..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 10010360..10010557 | 1..198 | 100 | -> | Plus |
arm_2L | 10010737..10011552 | 199..1014 | 100 | -> | Plus |
arm_2L | 10011607..10011908 | 1015..1316 | 100 | -> | Plus |
arm_2L | 10012400..10013169 | 1317..2087 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10010737..10011552 | 199..1014 | 100 | -> | Plus |
2L | 10011607..10011908 | 1015..1316 | 100 | -> | Plus |
2L | 10012400..10013169 | 1317..2087 | 99 | Plus | |
2L | 10010360..10010557 | 1..198 | 100 | -> | Plus |
Translation from 123 to 1409
> RE57702.pep MSGEEEYFQEEEEEEQEQDIYDDGTEYTEPGAQKVDKPSKDEKNVAKWLK KNVKTKKTKFLSHIVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFL DVMLEHKFFHRAKKVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKK DTDPEGDNGQGDGGASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYV WIYDPIPLHYWIFGFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLV FILALTIVRLIVFIIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNY NSDPNNSSAKTDKKSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTL EPEKIELIKEHDTDMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTP RNSGSDSESSSKDYEIISSSEVQNVAGN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15737-PA | 422 | GF15737-PA | 18..422 | 22..428 | 1461 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10077-PA | 423 | GG10077-PA | 13..423 | 26..428 | 1500 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11069-PA | 453 | GH11069-PA | 24..453 | 21..428 | 1290 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trp1-PB | 428 | CG4758-PB | 1..428 | 1..428 | 2235 | 100 | Plus |
Trp1-PA | 415 | CG4758-PA | 13..415 | 26..428 | 2102 | 100 | Plus |
Trp1-PC | 398 | CG4758-PC | 1..398 | 1..398 | 2088 | 100 | Plus |
Trp1-PD | 385 | CG4758-PD | 13..385 | 26..398 | 1955 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17586-PA | 427 | GI17586-PA | 13..427 | 26..428 | 1305 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18954-PA | 413 | GL18954-PA | 1..413 | 1..428 | 1458 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18410-PA | 413 | GA18410-PA | 1..413 | 1..428 | 1458 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17862-PA | 409 | GM17862-PA | 17..409 | 19..428 | 1441 | 90 | Plus |
Dsec\GM18782-PA | 268 | GM18782-PA | 1..268 | 1..268 | 1330 | 95.2 | Plus |
Dsec\GM11063-PA | 326 | GM11063-PA | 2..326 | 106..428 | 1173 | 92.9 | Plus |
Dsec\GM11065-PA | 256 | GM11065-PA | 2..256 | 106..398 | 789 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23649-PA | 447 | GD23649-PA | 36..447 | 19..428 | 1571 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17928-PA | 438 | GJ17928-PA | 13..438 | 26..428 | 1284 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12718-PA | 427 | GK12718-PA | 13..427 | 26..428 | 1399 | 75.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18890-PA | 417 | GE18890-PA | 13..417 | 26..428 | 2028 | 96 | Plus |
Translation from 123 to 1409
> RE57702.hyp MSGEEEYFQEEEEEEQEQDIYDDGTEYTEPGAQKVDKPSKDEKNVAKWLK KNVKTKKTKFLSHIVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFL DVMLEHKFFHRAKKVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKK DTDPEGDNGQGDGGASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYV WIYDPIPLHYWIFGFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLV FILALTIVRLIVFIIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNY NSDPNNSSAKTDKKSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTL EPEKIELIKEHDTDMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTP RNSGSDSESSSKDYEIISSSEVQNVAGN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trp1-PB | 428 | CG4758-PB | 1..428 | 1..428 | 2235 | 100 | Plus |
Trp1-PA | 415 | CG4758-PA | 13..415 | 26..428 | 2102 | 100 | Plus |
Trp1-PC | 398 | CG4758-PC | 1..398 | 1..398 | 2088 | 100 | Plus |
Trp1-PD | 385 | CG4758-PD | 13..385 | 26..398 | 1955 | 100 | Plus |