BDGP Sequence Production Resources |
Search the DGRC for RE57703
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 577 |
Well: | 3 |
Vector: | pFlc-1 |
Associated Gene/Transcript | fu12-RA |
Protein status: | RE57703.pep: gold |
Sequenced Size: | 1627 |
Gene | Date | Evidence |
---|---|---|
CG17608 | 2002-11-02 | Blastp of sequenced clone |
CG17608 | 2003-01-01 | Sim4 clustering to Release 3 |
fu12 | 2008-04-29 | Release 5.5 accounting |
fu12 | 2008-08-15 | Release 5.9 accounting |
fu12 | 2008-12-18 | 5.12 accounting |
1627 bp (1627 high quality bases) assembled on 2002-11-02
GenBank Submission: BT001684
> RE57703.complete AATTGCCCGCGGACTCTTGATTAAAGCGGAGGTATTTTTCGAGTGCCGGC ACTCTTTCGGCGAAAGCGGATGATTGTTTAAAAATCTGTGCGTACGCGCG TATATTCCTTTAACTAATCGGGATTGATTGCTTGCGCGGTTATTGCTTAA TTGCAGTGAGATTTTTGGTTCTATTGAAAGTGGCTAATGTTCGTTTAGTG GAATTTATTGCACTGCAGATGCTGCAAATTATACTAGAACACACACACAC ACATCGGCAAAACAACTGTTACGCCTACGCAGCAGCGGCAACAACAACAA CAACAACAGCAGCAAGGGAATTAGCAGCAACAATTTTCCACCCATAGAGG GAAATAACTGTTCCAAAAAGGATCCTTTGCGGTTAAGTAGCTCCCAAAAA TGGCTTGTACATGCGAAGTTATTGGACTGGCCTGCGTGGTGGCTTTAATC CTAAGCGCCACGGCCAAGGCTCCCTATCAGATGCGCATGTTCTTTATATT TTTTGGAGCTGGTCTGATAGTCTTTCTGTGCGTGCCCTTTATGATTCTGC GACCGCGAGACTATCGAAATGCGCTTTTTCCATCATGGTGCTTCCGGCAG CTTTGCCGCCTGGTGGGCATAACAATGGAGGTTCGTGGTCTGGAGAATGT CCGTAAGGACCATGGGGCAGTGGTGATAATGAACCACCAAAGTGCTGTTG ATCTTTGCGTTCTGGCCTATTTGTGGCCTGTGATCGGAAGAGCAACAGTT GTCTCCAAGAAGGAGGTTCTCTACATCCCATTCTTTGGCATTGGAGCATG GCTCTGGGGTACCCTATACATCGACCGCTCCCGCAAGACCGACTCGATCA ACTCTCTGCAAAAGGAGGCGAAGGCGATACAGGAGCGCAACTGCAAGCTA CTGCTCTTCCCTGAGGGAACGCGCAACTCCAAGGACTCGTTGCTGCCCTT CAAGAAGGGCTCATTCCACATCGCACTGCAGGGCAAGAGCCCCGTTCAGC CGGTGGTCATATCGAAGTACTCATTCATGGATGACGAGAAAAAGACATTC CGTCCTGGCCACGCCCTAATCCACATCCTACCCGAGGTGTCCACCGAGAA GTACAAGAGGGAGGACGTGCAGCTGCTGATCGACGAATGCCAGTCCATCA TGCAGACGGAGTACACAAAGCTGAGCAAAGAAGGCCAAGCCTTGAGCTCA AAGAAGCAGGCATAGGACTGGATAGGTTACGATCAAACTCAGGTTATAAA AAAGTTACACCCAAACGTTTCGGGTTTAAATTTACAATCGATCCACAAGA TTTGCCTATCCATGGATGAGAAAAATCAAAGGCAACAGAATGCCGTTACT TGAGGGACGTAAAACCGTTGGCCTAGTGTTAAGTTACACAATATCACTCC ATGGGTGAATTTTCGATTAATATTAACTGTTTTACCTCCAGTACATGCAT GTGTATGCCCAGAGCTTTTTTCGACTAAGCGAGATAAAAACAGGAAGATA AATTTTACAAACGAAGTAAGCGCATTTGTTGGATGTTTAGCTTTATGCAA ATATTGTATTGATTTATATGTGAATAATGAAATGAGACCTATTTAATAAA ACATTTTGCACTGAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fu12-RA | 1744 | fu12-RA | 113..1727 | 1..1615 | 8075 | 100 | Plus |
fu12-RC | 2080 | fu12-RC | 813..2063 | 365..1615 | 6255 | 100 | Plus |
fu12-RB | 1378 | fu12-RB | 130..1378 | 365..1613 | 6245 | 100 | Plus |
fu12-RC | 2080 | fu12-RC | 1..364 | 1..364 | 1820 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8448595..8449632 | 1613..576 | 5130 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 8462535..8462898 | 364..1 | 1820 | 100 | Minus |
chr2L | 23010047 | chr2L | 8449698..8449908 | 575..365 | 1040 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8449689..8450728 | 1615..576 | 5200 | 100 | Minus |
2L | 23513712 | 2L | 8463627..8463990 | 364..1 | 1820 | 100 | Minus |
2L | 23513712 | 2L | 8450794..8451004 | 575..365 | 1055 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8449689..8450728 | 1615..576 | 5200 | 100 | Minus |
2L | 23513712 | 2L | 8463627..8463990 | 364..1 | 1820 | 100 | Minus |
2L | 23513712 | 2L | 8450794..8451004 | 575..365 | 1055 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2423 | 279..333 | 176 | 80 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1099..1153 | 279..333 | 167 | 78.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2461 | 252..332 | 157 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2819 | 280..333 | 153 | 75.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6844 | 261..333 | 151 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2594..2648 | 279..333 | 149 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6919 | 212..333 | 146 | 59.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1066..1113 | 279..326 | 141 | 77.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1564 | 286..332 | 136 | 76.6 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 914..1004 | 245..333 | 125 | 65.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8449698..8449908 | 365..575 | 99 | <- | Minus |
chr2L | 8462535..8462898 | 1..364 | 92 | Minus | |
chr2L | 8448595..8449632 | 576..1613 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fu12-RB | 1..816 | 400..1215 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fu12-RC | 1..816 | 400..1215 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fu12-RB | 1..816 | 400..1215 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fu12-RB | 1..816 | 400..1215 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fu12-RB | 1..816 | 400..1215 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fu12-RA | 1..1613 | 1..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fu12-RA | 1..1613 | 1..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fu12-RA | 5..1617 | 1..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fu12-RA | 1..1613 | 1..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
fu12-RA | 5..1617 | 1..1613 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8449691..8450728 | 576..1613 | 100 | <- | Minus |
2L | 8450794..8451004 | 365..575 | 100 | <- | Minus |
2L | 8463627..8463990 | 1..364 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8449691..8450728 | 576..1613 | 100 | <- | Minus |
2L | 8450794..8451004 | 365..575 | 100 | <- | Minus |
2L | 8463627..8463990 | 1..364 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8449691..8450728 | 576..1613 | 100 | <- | Minus |
2L | 8450794..8451004 | 365..575 | 100 | <- | Minus |
2L | 8463627..8463990 | 1..364 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8449691..8450728 | 576..1613 | 100 | <- | Minus |
arm_2L | 8450794..8451004 | 365..575 | 100 | <- | Minus |
arm_2L | 8463627..8463990 | 1..364 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8449691..8450728 | 576..1613 | 100 | <- | Minus |
2L | 8450794..8451004 | 365..575 | 100 | <- | Minus |
2L | 8463627..8463990 | 1..364 | 100 | Minus |
Translation from 399 to 1214
> RE57703.pep MACTCEVIGLACVVALILSATAKAPYQMRMFFIFFGAGLIVFLCVPFMIL RPRDYRNALFPSWCFRQLCRLVGITMEVRGLENVRKDHGAVVIMNHQSAV DLCVLAYLWPVIGRATVVSKKEVLYIPFFGIGAWLWGTLYIDRSRKTDSI NSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ PVVISKYSFMDDEKKTFRPGHALIHILPEVSTEKYKREDVQLLIDECQSI MQTEYTKLSKEGQALSSKKQA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14372-PA | 271 | GF14372-PA | 1..271 | 1..271 | 1284 | 88.6 | Plus |
Dana\GF21388-PA | 331 | GF21388-PA | 32..265 | 31..262 | 435 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24070-PA | 271 | GG24070-PA | 1..271 | 1..271 | 1428 | 97.8 | Plus |
Dere\GG17739-PA | 353 | GG17739-PA | 32..265 | 31..262 | 429 | 36.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10772-PA | 271 | GH10772-PA | 1..271 | 1..271 | 1094 | 70.5 | Plus |
Dgri\GH12135-PA | 324 | GH12135-PA | 1..261 | 1..259 | 447 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Agpat2-PC | 271 | CG17608-PC | 1..271 | 1..271 | 1410 | 100 | Plus |
Agpat2-PD | 271 | CG17608-PD | 1..271 | 1..271 | 1410 | 100 | Plus |
Agpat2-PB | 271 | CG17608-PB | 1..271 | 1..271 | 1410 | 100 | Plus |
Agpat2-PA | 271 | CG17608-PA | 1..271 | 1..271 | 1410 | 100 | Plus |
Agpat1-PC | 343 | CG3812-PC | 4..267 | 1..261 | 426 | 36 | Plus |
Agpat1-PB | 343 | CG3812-PB | 4..267 | 1..261 | 426 | 36 | Plus |
Agpat1-PA | 343 | CG3812-PA | 4..267 | 1..261 | 426 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17635-PA | 271 | GI17635-PA | 1..271 | 1..271 | 1188 | 77.9 | Plus |
Dmoj\GI15913-PA | 323 | GI15913-PA | 1..264 | 1..261 | 444 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25650-PA | 271 | GL25650-PA | 1..271 | 1..271 | 1311 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14576-PA | 271 | GA14576-PA | 1..271 | 1..271 | 1308 | 87.1 | Plus |
Dpse\GA17703-PA | 350 | GA17703-PA | 32..268 | 31..265 | 432 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12902-PA | 271 | GM12902-PA | 1..271 | 1..271 | 1452 | 100 | Plus |
Dsec\GM11583-PA | 344 | GM11583-PA | 35..268 | 31..262 | 438 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22398-PA | 271 | GD22398-PA | 1..271 | 1..271 | 1452 | 100 | Plus |
Dsim\GD17087-PA | 348 | GD17087-PA | 35..272 | 31..262 | 428 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18200-PA | 271 | GJ18200-PA | 1..270 | 1..270 | 1178 | 75.9 | Plus |
Translation from 399 to 1214
> RE57703.hyp MACTCEVIGLACVVALILSATAKAPYQMRMFFIFFGAGLIVFLCVPFMIL RPRDYRNALFPSWCFRQLCRLVGITMEVRGLENVRKDHGAVVIMNHQSAV DLCVLAYLWPVIGRATVVSKKEVLYIPFFGIGAWLWGTLYIDRSRKTDSI NSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ PVVISKYSFMDDEKKTFRPGHALIHILPEVSTEKYKREDVQLLIDECQSI MQTEYTKLSKEGQALSSKKQA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
fu12-PC | 271 | CG17608-PC | 1..271 | 1..271 | 1410 | 100 | Plus |
fu12-PD | 271 | CG17608-PD | 1..271 | 1..271 | 1410 | 100 | Plus |
fu12-PB | 271 | CG17608-PB | 1..271 | 1..271 | 1410 | 100 | Plus |
fu12-PA | 271 | CG17608-PA | 1..271 | 1..271 | 1410 | 100 | Plus |
CG3812-PC | 343 | CG3812-PC | 4..267 | 1..261 | 426 | 36 | Plus |