Clone RE57703 Report

Search the DGRC for RE57703

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:577
Well:3
Vector:pFlc-1
Associated Gene/Transcriptfu12-RA
Protein status:RE57703.pep: gold
Sequenced Size:1627

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17608 2002-11-02 Blastp of sequenced clone
CG17608 2003-01-01 Sim4 clustering to Release 3
fu12 2008-04-29 Release 5.5 accounting
fu12 2008-08-15 Release 5.9 accounting
fu12 2008-12-18 5.12 accounting

Clone Sequence Records

RE57703.complete Sequence

1627 bp (1627 high quality bases) assembled on 2002-11-02

GenBank Submission: BT001684

> RE57703.complete
AATTGCCCGCGGACTCTTGATTAAAGCGGAGGTATTTTTCGAGTGCCGGC
ACTCTTTCGGCGAAAGCGGATGATTGTTTAAAAATCTGTGCGTACGCGCG
TATATTCCTTTAACTAATCGGGATTGATTGCTTGCGCGGTTATTGCTTAA
TTGCAGTGAGATTTTTGGTTCTATTGAAAGTGGCTAATGTTCGTTTAGTG
GAATTTATTGCACTGCAGATGCTGCAAATTATACTAGAACACACACACAC
ACATCGGCAAAACAACTGTTACGCCTACGCAGCAGCGGCAACAACAACAA
CAACAACAGCAGCAAGGGAATTAGCAGCAACAATTTTCCACCCATAGAGG
GAAATAACTGTTCCAAAAAGGATCCTTTGCGGTTAAGTAGCTCCCAAAAA
TGGCTTGTACATGCGAAGTTATTGGACTGGCCTGCGTGGTGGCTTTAATC
CTAAGCGCCACGGCCAAGGCTCCCTATCAGATGCGCATGTTCTTTATATT
TTTTGGAGCTGGTCTGATAGTCTTTCTGTGCGTGCCCTTTATGATTCTGC
GACCGCGAGACTATCGAAATGCGCTTTTTCCATCATGGTGCTTCCGGCAG
CTTTGCCGCCTGGTGGGCATAACAATGGAGGTTCGTGGTCTGGAGAATGT
CCGTAAGGACCATGGGGCAGTGGTGATAATGAACCACCAAAGTGCTGTTG
ATCTTTGCGTTCTGGCCTATTTGTGGCCTGTGATCGGAAGAGCAACAGTT
GTCTCCAAGAAGGAGGTTCTCTACATCCCATTCTTTGGCATTGGAGCATG
GCTCTGGGGTACCCTATACATCGACCGCTCCCGCAAGACCGACTCGATCA
ACTCTCTGCAAAAGGAGGCGAAGGCGATACAGGAGCGCAACTGCAAGCTA
CTGCTCTTCCCTGAGGGAACGCGCAACTCCAAGGACTCGTTGCTGCCCTT
CAAGAAGGGCTCATTCCACATCGCACTGCAGGGCAAGAGCCCCGTTCAGC
CGGTGGTCATATCGAAGTACTCATTCATGGATGACGAGAAAAAGACATTC
CGTCCTGGCCACGCCCTAATCCACATCCTACCCGAGGTGTCCACCGAGAA
GTACAAGAGGGAGGACGTGCAGCTGCTGATCGACGAATGCCAGTCCATCA
TGCAGACGGAGTACACAAAGCTGAGCAAAGAAGGCCAAGCCTTGAGCTCA
AAGAAGCAGGCATAGGACTGGATAGGTTACGATCAAACTCAGGTTATAAA
AAAGTTACACCCAAACGTTTCGGGTTTAAATTTACAATCGATCCACAAGA
TTTGCCTATCCATGGATGAGAAAAATCAAAGGCAACAGAATGCCGTTACT
TGAGGGACGTAAAACCGTTGGCCTAGTGTTAAGTTACACAATATCACTCC
ATGGGTGAATTTTCGATTAATATTAACTGTTTTACCTCCAGTACATGCAT
GTGTATGCCCAGAGCTTTTTTCGACTAAGCGAGATAAAAACAGGAAGATA
AATTTTACAAACGAAGTAAGCGCATTTGTTGGATGTTTAGCTTTATGCAA
ATATTGTATTGATTTATATGTGAATAATGAAATGAGACCTATTTAATAAA
ACATTTTGCACTGAAAAAAAAAAAAAA

RE57703.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
fu12-RA 1744 fu12-RA 113..1727 1..1615 8075 100 Plus
fu12-RC 2080 fu12-RC 813..2063 365..1615 6255 100 Plus
fu12-RB 1378 fu12-RB 130..1378 365..1613 6245 100 Plus
fu12-RC 2080 fu12-RC 1..364 1..364 1820 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8448595..8449632 1613..576 5130 99.6 Minus
chr2L 23010047 chr2L 8462535..8462898 364..1 1820 100 Minus
chr2L 23010047 chr2L 8449698..8449908 575..365 1040 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8449689..8450728 1615..576 5200 100 Minus
2L 23513712 2L 8463627..8463990 364..1 1820 100 Minus
2L 23513712 2L 8450794..8451004 575..365 1055 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8449689..8450728 1615..576 5200 100 Minus
2L 23513712 2L 8463627..8463990 364..1 1820 100 Minus
2L 23513712 2L 8450794..8451004 575..365 1055 100 Minus
Blast to na_te.dros performed 2019-03-15 14:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2423 279..333 176 80 Plus
roo 9092 roo DM_ROO 9092bp 1099..1153 279..333 167 78.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2461 252..332 157 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2819 280..333 153 75.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6771..6844 261..333 151 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2594..2648 279..333 149 74.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6919 212..333 146 59.8 Plus
roo 9092 roo DM_ROO 9092bp 1066..1113 279..326 141 77.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1564 286..332 136 76.6 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 914..1004 245..333 125 65.6 Plus

RE57703.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:25:31 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8449698..8449908 365..575 99 <- Minus
chr2L 8462535..8462898 1..364 92   Minus
chr2L 8448595..8449632 576..1613 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:31:52 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
fu12-RB 1..816 400..1215 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:00 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
fu12-RC 1..816 400..1215 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:28:15 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
fu12-RB 1..816 400..1215 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:57:54 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
fu12-RB 1..816 400..1215 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:58:07 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
fu12-RB 1..816 400..1215 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:31:51 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
fu12-RA 1..1613 1..1613 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:00 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
fu12-RA 1..1613 1..1613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:28:15 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
fu12-RA 5..1617 1..1613 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:57:54 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
fu12-RA 1..1613 1..1613 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:58:07 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
fu12-RA 5..1617 1..1613 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:31 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8449691..8450728 576..1613 100 <- Minus
2L 8450794..8451004 365..575 100 <- Minus
2L 8463627..8463990 1..364 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:31 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8449691..8450728 576..1613 100 <- Minus
2L 8450794..8451004 365..575 100 <- Minus
2L 8463627..8463990 1..364 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:25:31 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8449691..8450728 576..1613 100 <- Minus
2L 8450794..8451004 365..575 100 <- Minus
2L 8463627..8463990 1..364 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:28:15 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8449691..8450728 576..1613 100 <- Minus
arm_2L 8450794..8451004 365..575 100 <- Minus
arm_2L 8463627..8463990 1..364 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:30:22 Download gff for RE57703.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8449691..8450728 576..1613 100 <- Minus
2L 8450794..8451004 365..575 100 <- Minus
2L 8463627..8463990 1..364 100   Minus

RE57703.pep Sequence

Translation from 399 to 1214

> RE57703.pep
MACTCEVIGLACVVALILSATAKAPYQMRMFFIFFGAGLIVFLCVPFMIL
RPRDYRNALFPSWCFRQLCRLVGITMEVRGLENVRKDHGAVVIMNHQSAV
DLCVLAYLWPVIGRATVVSKKEVLYIPFFGIGAWLWGTLYIDRSRKTDSI
NSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ
PVVISKYSFMDDEKKTFRPGHALIHILPEVSTEKYKREDVQLLIDECQSI
MQTEYTKLSKEGQALSSKKQA*

RE57703.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14372-PA 271 GF14372-PA 1..271 1..271 1284 88.6 Plus
Dana\GF21388-PA 331 GF21388-PA 32..265 31..262 435 37 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24070-PA 271 GG24070-PA 1..271 1..271 1428 97.8 Plus
Dere\GG17739-PA 353 GG17739-PA 32..265 31..262 429 36.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10772-PA 271 GH10772-PA 1..271 1..271 1094 70.5 Plus
Dgri\GH12135-PA 324 GH12135-PA 1..261 1..259 447 37 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Agpat2-PC 271 CG17608-PC 1..271 1..271 1410 100 Plus
Agpat2-PD 271 CG17608-PD 1..271 1..271 1410 100 Plus
Agpat2-PB 271 CG17608-PB 1..271 1..271 1410 100 Plus
Agpat2-PA 271 CG17608-PA 1..271 1..271 1410 100 Plus
Agpat1-PC 343 CG3812-PC 4..267 1..261 426 36 Plus
Agpat1-PB 343 CG3812-PB 4..267 1..261 426 36 Plus
Agpat1-PA 343 CG3812-PA 4..267 1..261 426 36 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17635-PA 271 GI17635-PA 1..271 1..271 1188 77.9 Plus
Dmoj\GI15913-PA 323 GI15913-PA 1..264 1..261 444 36.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25650-PA 271 GL25650-PA 1..271 1..271 1311 87.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14576-PA 271 GA14576-PA 1..271 1..271 1308 87.1 Plus
Dpse\GA17703-PA 350 GA17703-PA 32..268 31..265 432 37 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12902-PA 271 GM12902-PA 1..271 1..271 1452 100 Plus
Dsec\GM11583-PA 344 GM11583-PA 35..268 31..262 438 37.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22398-PA 271 GD22398-PA 1..271 1..271 1452 100 Plus
Dsim\GD17087-PA 348 GD17087-PA 35..272 31..262 428 37.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18200-PA 271 GJ18200-PA 1..270 1..270 1178 75.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24838-PA 271 GK24838-PA 1..271 1..271 1263 81.5 Plus
Dwil\GK16209-PA 341 GK16209-PA 32..261 31..259 437 37.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10971-PA 271 GE10971-PA 1..271 1..271 1445 98.9 Plus
Dyak\GE17028-PA 344 GE17028-PA 32..265 31..262 430 36.6 Plus

RE57703.hyp Sequence

Translation from 399 to 1214

> RE57703.hyp
MACTCEVIGLACVVALILSATAKAPYQMRMFFIFFGAGLIVFLCVPFMIL
RPRDYRNALFPSWCFRQLCRLVGITMEVRGLENVRKDHGAVVIMNHQSAV
DLCVLAYLWPVIGRATVVSKKEVLYIPFFGIGAWLWGTLYIDRSRKTDSI
NSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ
PVVISKYSFMDDEKKTFRPGHALIHILPEVSTEKYKREDVQLLIDECQSI
MQTEYTKLSKEGQALSSKKQA*

RE57703.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
fu12-PC 271 CG17608-PC 1..271 1..271 1410 100 Plus
fu12-PD 271 CG17608-PD 1..271 1..271 1410 100 Plus
fu12-PB 271 CG17608-PB 1..271 1..271 1410 100 Plus
fu12-PA 271 CG17608-PA 1..271 1..271 1410 100 Plus
CG3812-PC 343 CG3812-PC 4..267 1..261 426 36 Plus